Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq76095 89.7 6e-13 seq331091 86.0 7e-12 seq150316 86.0 7e-12 seq469902 84.2 2e-11 seq58530 84.2 2e-11 seq64090 82.4 8e-11 >seq76095 Length=1076 Score = 89.7 bits (98), Expect = 6e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 57002 ATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCAC 57061 || |||||| || | | ||| |||||| ||||||||||||||||||||| |||||||| Sbjct 440 ATATTCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCAC 381 Query 57062 CACTATACTACCGAGGA 57078 |||||||||| |||||| Sbjct 380 CACTATACTAACGAGGA 364 >seq331091 Length=722 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | ||| |||||| ||||||||||||||||||||| ||||||||||||| Sbjct 333 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 392 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 393 TACTAACGAGGA 404 >seq150316 Length=2093 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | ||| |||||| ||||||||||||||||||||| ||||||||||||| Sbjct 159 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 100 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 99 TACTAACGAGGA 88 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | ||| |||||| ||||||||||||||||||||| ||||||||||||| Sbjct 471 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 412 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 411 TACTAACGAGGA 400 >seq469902 Length=392 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/89 (81%), Gaps = 4/89 (4%) Strand=Plus/Minus Query 57002 ATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCAC 57061 ||| ||||| || | | ||| |||||| ||||||||||||||||||||| ||||| | Sbjct 309 ATTGTCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTATC 250 Query 57062 CACTATACTACCGAGGATTGAATATATAA 57090 |||||||||| |||| |||||||||| Sbjct 249 CACTATACTAACGAG----GAATATATAA 225 >seq58530 Length=1305 Score = 84.2 bits (92), Expect = 2e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 57003 TTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 57062 |||||||| || | | ||| |||||| ||||||||||||||||||||| ||||| || Sbjct 928 TTTTCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTATCC 987 Query 57063 ACTATACTACCGAGGA 57078 ||||||||| |||||| Sbjct 988 ACTATACTAACGAGGA 1003 >seq64090 Length=4476 Score = 82.4 bits (90), Expect = 8e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 57004 TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 57063 ||||||| || | | ||| |||||| ||||||||||||||||||||| ||||| ||| Sbjct 4304 TTTCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTATCCA 4245 Query 57064 CTATACTACCGAGGA 57078 |||||||| |||||| Sbjct 4244 CTATACTAACGAGGA 4230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 539644557339680