Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_010583.1 Length=111382 Score E Sequences producing significant alignments: (Bits) Value seq426744 219 3e-52 seq507483 140 2e-28 seq435060 132 3e-26 seq506238 98.7 7e-16 seq510012 96.9 2e-15 seq508595 89.7 4e-13 seq484804 87.8 1e-12 >seq426744 Length=341 Score = 219 bits (242), Expect = 3e-52 Identities = 240/313 (77%), Gaps = 6/313 (2%) Strand=Plus/Plus Query 102061 ATTAAGCGGCAGCGTAAGCACCAGATACAACGCCGTT--CTCGAAGTA-ACGTTGCAGGT 102117 |||| || || ||||| | ||||| || | || || || || | |||||| |||| Sbjct 29 ATTACGCTGCTGCGTATGTACCAGTAACGATACCTTTACCTGCAATCATACGTTGTAGGT 88 Query 102118 TAACACGCTGAGTAACGTAGTATGCGTCACGCTGTTTGCCAGCTTGGCGCTCACGTTCAA 102177 ||| ||| ||||| ||||||||||| ||||| || || |||||||| ||||||||||| | Sbjct 89 TAAGACGTTGAGTTACGTAGTATGCATCACGTTGCTTACCAGCTTGACGCTCACGTTCTA 148 Query 102178 CAGTAACAGCACGCTGACGCGGCATTACGAAGTTATCTTTATAAACAATAACTGCGAATT 102237 | |||| || ||| ||||| || | |||||||| || ||||| ||| ||||| Sbjct 149 CTGTAATAGTACGTTGACGAGGAACAACGAAGTTCTCACGGTAAACGATAGTACAGAATT 208 Query 102238 CTGCAGAAGCAGCTTTAGCTGGGAAATACTCAGAAACTACAACCGGCAGACCGTAAATAC 102297 ||| | |||||||||||||||| || | |||||||| ||| | |||||||| |||| Sbjct 209 CTGAACTGACAGCTTTAGCTGGGAAGTAGTTAGAAACTAGAACTGCTAGACCGTAGATAC 268 Query 102298 GACCAACCTGACCTTGCAG-TTTAAC-AG-CATCGTTACCAACCTGGGCAACATCCTGCC 102354 ||||||| || ||||| || |||||| || ||| |||||| ||| ||||||||||| Sbjct 269 GACCAACTTGTCCTTGAAGTTTTAACGAGTTATCCGCACCAACTTGGTTAACATCCTGCC 328 Query 102355 ATTCTTCATCTTC 102367 ||||||||||||| Sbjct 329 ATTCTTCATCTTC 341 >seq507483 Length=1083 Score = 140 bits (154), Expect = 2e-28 Identities = 415/629 (66%), Gaps = 16/629 (3%) Strand=Plus/Plus Query 74852 CATTGATGCAGATGGTTGCATT--CGTACTGGTTTCCATGAACACATGACTACTTCTGGT 74909 |||||| ||||||| |||| ||||| || || |||||| ||| ||||| ||| Sbjct 371 CATTGACCGAGATGGT--CATTTACGTACAGGGTTTAGCCAACACACGACCACTTCGGGT 428 Query 74910 CGTCTGAGTTCTTCTGGTAAGCTGAACCTGCAACAGTTACCACGTGATGAATCTATTATC 74969 ||||| ||||| || || || || ||| | || || | || |||||||| |||| | Sbjct 429 CGTCTAAGTTCATCAGGCAAACTTAACTTACAGCAACTTCCTCGTGATGATGCTATGGTT 488 Query 74970 AAGGGTTGTGTAGTAGCTCCCCCTGGATATCGTGTAATCGCATGGGACTTAACAACTGCG 75029 ||||| ||| | |||||||| | || ||| | ||| | || ||| | ||||||| Sbjct 489 AAGGGATGTATTGTAGCTCCTGCGGGCTATAGAGTAGTAGCCGTGGATATGGAAACTGCG 548 Query 75030 GAAGTTTATTACGCTGCTGTACTGTCTGGTGACAGAA-ACATGCAACAAGTATTT-ATCA 75087 ||| | | || || | ||| ||| || | || || | || |||| ||| | | Sbjct 549 GAAATGTGGGTAGCAGCAGCACTTAGTGGGGATAAAAGACCTACAGAAAGTGTTTTAACG 608 Query 75088 ACATGAAGAATGAGCCAGATAAATATCCTGACTTCCACTCAAACATCGCACACATGGTAT 75147 | ||| | || | | || | | ||||||||| || ||||||||||| | Sbjct 609 ATATGGCTGACAAGTCTATTGTATCTGCCGACTTCCACAGCTCTATTGCACACATGGTGT 668 Query 75148 TTAAACTGACCTGTGAACCGCGTGATGTTAAGAAGT-TGTTCCCAGCTCTGCGTCAGGCT 75206 | || | | |||| | ||| ||| |||| | | ||||||| || | ||||||||| Sbjct 669 TCAAGCCAAACTGTCTAGCGCATGA-ATTAAAAGCTATGTTCCCTGCATTACGTCAGGCT 727 Query 75207 GCTAAGGCAATTACCTTCGGTATTCTGTACGGTTCTGGCCCAGCTAAAGTAGCTCATTCT 75266 |||| || ||| | ||||||||||| | |||| ||| |||||||| ||||| | ||| Sbjct 728 TCTAAAGCTATTTCATTCGGTATTCTATTCGGTAGTGGACCAGCTAAGGTAGCAGAATCT 787 Query 75267 GTTAACGAAGCTCTTCTGGAACAGGCCGCTAAGACAGGCGAACCGTTTGTTGAATGTACC 75326 |||| || | || | || || | ||||| || || | ||| || Sbjct 788 ATTAATGAGTCGCTATTTGAGCAACATGTAAAGACGGGTTGCCC---TTACGAACCTATT 844 Query 75327 GTTGCAGA---TGCGAAGGACTATATCGAAACTTACTTCGGTCAATTCCCTCAGCTTAAG 75383 | | ||| || || || || || || |||||| ||| |||||| | || || Sbjct 845 GATAAAGAAACAGCTAAAGATTACATTGATGTTTACTTTAGTCGTTTCCCTGACCTGAAA 904 Query 75384 CGTTGGATTGATAAGTGCCACGATCAGA-TCAAGAACTTTGGATTCATCTACAGTCACTT 75442 ||||||||||| || ||| || |||| || | | | ||| || || || || ||||| Sbjct 905 CGTTGGATTGACGCGTCCCATGAGCAGATTCTACAGC-ATGGGTTTATTTATAGCCACTT 963 Query 75443 TGGTCGTAAGCGTCGTCTGCACAATATCC 75471 || ||||| ||| | || | ||||||| Sbjct 964 CGGACGTAAACGTAGACTACGTAATATCC 992 >seq435060 Length=507 Score = 132 bits (146), Expect = 3e-26 Identities = 300/446 (67%), Gaps = 25/446 (6%) Strand=Plus/Plus Query 75108 AAATATCCTGACTTCCACTCAAACATCGCACACATGGTATTTAAACTGACCTGTGAACCG 75167 || ||||| ||||||||| ||||| || |||||||| ||||| || | ||| | || Sbjct 44 AAGTATCCCGACTTCCACAGTAACATAGCTCACATGGTGTTTAACCTACCTTGTAAGCCT 103 Query 75168 CGTGATGTTAAGAAGTTGTTCCCAGCTCTGCGTCAGGCTGCTAAGGCAATTACCTTCGGT 75227 || |||||||| | |||||||| || | |||||||| ||||| || || || ||| Sbjct 104 GAGGAAGTTAAGAAACTATTCCCAGCCCTAAGGCAGGCTGCGAAGGCGATAACATTTGGT 163 Query 75228 ATTCTGTACGGTTCTGGCCCAGCTAAAGTAGCTCATTCTGTTAACGAAGCTCTTCTGGAA 75287 ||||| | |||||| || |||| ||||| | |||||| |||| || ||| Sbjct 164 ATTCTATTCGGTTCAGGAGCAGCATCTGTAGCAGAGCAAGTTAACTTAGCTAAGCTAGAA 223 Query 75288 CAGGCCGCTAAGACAGGCGAACCGTTTGTTGAATGTACCGTTGCAGATGC-GAAGGACTA 75346 ||| ||| | | ||| ||||| | | || | ||| || Sbjct 224 TT------------AGGTGAAGCA---GCTGATTGTACTAAAGAAATCGCCGCAGGT-TA 267 Query 75347 TATCGAAACTTACTTCGGTCAATTCCCTCAGCTTAA-GCGTTGGATTGATAAGTGCCACG 75405 |||||| |||||| | |||||| ||||| |||| |||||||| || || | Sbjct 268 CATCGAAGTGTACTTCAAGCGGTTCCCTAGACTTAAAGCGT-GGATTGATTCTTGTCATG 326 Query 75406 ATCAGATCA---AGAACTTTGGATTCATCTACAGTCACTTTGGTCGTAAGCGTCGTCTGC 75462 || | ||| |||| ||||| || |||| ||||| || ||||||||| | | | Sbjct 327 ATGAAATCCGTCAGAAA---GGATTTATATACAACCACTTCGGCCGTAAGCGTAGATTAC 383 Query 75463 ACAATATCCATTCTGAAGATCGTGGTGTTCAGGGTGAGGAAATCCGTTCTGGATTTAACG 75522 |||| ||| |||| ||| | || ||| |||| ||||||||||| |||||||| | Sbjct 384 ACAACATCTCTTCTAGCGATAGAGGCGTTGTAGGTGGAGAAATCCGTTCAGGATTTAATG 443 Query 75523 CAATCATTCAGTCTGCATCTTCGGAT 75548 | ||||| |||||||| || || ||| Sbjct 444 CTATCATACAGTCTGCGTCATCTGAT 469 >seq506238 Length=275 Score = 98.7 bits (108), Expect = 7e-16 Identities = 126/172 (73%), Gaps = 4/172 (2%) Strand=Plus/Plus Query 29172 GTAAATGTACGACTAATAACGTCGTTCTGTTGTTCACGCGTCAGTGCATTAAATCGAACA 29231 ||||||||||| | | ||||| | ||||||||| | || | || ||||| || || Sbjct 52 GTAAATGTACGTGTTAATACGTCTTGCTGTTGTTCTGGTGTTAATGAGTTAAAACGCACT 111 Query 29232 GCATAGCCAGAGACACGAATGGTCAACTGAGGGTATTTTTCAGGATGTTTCTGTGCATC- 29290 || || || || |||||||| || || || || ||||||||||| ||||| ||||| Sbjct 112 GCGTAACCTGATACACGAATAGTTAATTGTGGATATTTTTCAGGGTGTTTAACAGCATCT 171 Query 29291 -CAAAAGCTGATCACGACTTAACACATTGACATTTAGGTGCTGACCTCCCTC 29341 | || | | ||||||| ||||||||| || |||| || ||||| || || Sbjct 172 TCCAATGTT--TCACGACGTAACACATTCACGTTTAAATGTTGACCACCTTC 221 >seq510012 Length=1165 Score = 96.9 bits (106), Expect = 2e-15 Identities = 147/203 (72%), Gaps = 10/203 (5%) Strand=Plus/Minus Query 40559 ATCAACTTCACAATACGTTCGGCCATATTCTTTTACCCACGAAGTGTTGTATAGCTTCGC 40618 ||||||||||||||| | || ||||| |||| || ||| ||||||||| ||| || || Sbjct 1114 ATCAACTTCACAATAGTTACGACCATACTCTTCTA-CCAAGAAGTGTTGAATACTTTGGC 1056 Query 40619 AAGGTATTTTGTTAAAGTAGTCTTT---CCTGAGCTTTCAGTCCCAATGATTACAACCTT 40675 ||||| ||||| | ||| ||||| | ||| ||||| |||||||| ||| |||| Sbjct 1055 GAGGTACTTTGTAAGGGTACTCTTTGCACTTGA---CTCAGTACCAATGATAACAGCCTT 999 Query 40676 ACGCACGTAATCTTTACGAACTACGCTAGG-AAGAAACTCCCAATACTTCATA-AGATCA 40733 || | | |||||||| |||| ||| | | ||| ||| ||||| ||| || Sbjct 998 TAACAAGAACTCTTTACGGACTAGAGAAGGTAGGTTACTGCCAGTACTT-ATAGGGAGAC 940 Query 40734 TTACGAATCATTGTAGCTGAGAT 40756 | ||| ||| ||||||| ||||| Sbjct 939 TGACGTATCTTTGTAGCAGAGAT 917 >seq508595 Length=419 Score = 89.7 bits (98), Expect = 4e-13 Identities = 68/79 (86%), Gaps = 1/79 (1%) Strand=Plus/Minus Query 31012 TGGTGCGGGATACGAGAGTCGAACTCGTGTCTACTGGTTGGAAGCCAGTTATTCTAGCCA 31071 |||||||| || |||| |||||||| |||||||| |||||||||||||||||| ||| Sbjct 354 TGGTGCGGAATTAGAGATTCGAACTCTAATCTACTGGGTGGAAGCCAGTTATTCTA-CCA 296 Query 31072 CTGAACTAATCACGCATAA 31090 |||||||||| ||||||| Sbjct 295 TTGAACTAATCCCGCATAA 277 >seq484804 Length=980 Score = 87.8 bits (96), Expect = 1e-12 Identities = 245/365 (67%), Gaps = 17/365 (5%) Strand=Plus/Plus Query 51109 AATTTCTC--CACGATCGTCAATCCCTCTT---TTCAAATTATGATAGACTTTGGCTAAC 51163 ||| |||| | ||||| ||||| ||| || ||||| |||| | | ||| | | Sbjct 4 AATATCTCAGCGCGATCATCAATACCTTTTGGATTCAAGTTATCAACAATTTTTTTCAGC 63 Query 51164 TGATCAAA--TACCATACCATCAGAATTAGTCCAATGACGTCCTTGAACACCATAGACTC 51221 || |||| ||||| ||||||| |||| ||| ||| ||||||| || || || | Sbjct 64 TGGTCAATGCTACCA--CCATCAGGCTTAGCCCATGCACGGCCTTGAATCCCGTAAACGC 121 Query 51222 GTCCCATATCATCCTCGCCTTTACG--GAATGGATTACCTAGCCAGGCAATATTTTCATT 51279 | ||||||||||| || ||||| || ||||| ||| ||||| ||| |||| ||| Sbjct 122 GCCCCATATCATCTTCACCTTTGCGGTGAATG--TTATTAAGCCAAGCATCATTTAAATT 179 Query 51280 TGCATTAGCATTCCATGTATTAACACCAATAGCGCGGAATTGTGCTGCTGAGTCGTACCC 51339 |||||||||| ||| || ||| ||| | || || | || || ||| || || Sbjct 180 GGCATTAGCATCCCAGGTTTTAGTACCTAGTTTACGAAAATCAGCGGCATTGTCATAACC 239 Query 51340 ACGGAGATATCCGATCATTTCCATTATTGCTTGTTTAGCAAATGCT-TTACGAGTAGTTA 51398 ||||| ||| || || | || || || || | | ||| ||| ||||| ||||||| Sbjct 240 ACGGATATAACCAATAAACTCAGCAATCGC-TGACTTGAAAAAGCTCTTACGCGTAGTTA 298 Query 51399 CTAGCGGCAGTTCTCCTGCTCCTACGTT-AAAGGTAAAGTCTGCATCAATAATGGTTAGG 51457 || || | || || || || || | ||||| || |||| ||| | ||||| Sbjct 299 TTAATGGAAACTCGTTAGCACCAACATTGTATTGTAAA-TCAGCATTAATGACGGTTAAA 357 Query 51458 CAACG 51462 ||||| Sbjct 358 CAACG 362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354015672201746