Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_011043.1 Length=41181 Score E Sequences producing significant alignments: (Bits) Value seq512931 181 3e-41 >seq512931 Length=538 Score = 181 bits (200), Expect = 3e-41 Identities = 360/527 (68%), Gaps = 46/527 (9%) Strand=Plus/Plus Query 39067 CCAGACCACAGCCCGTCAGTTAAGTCTGTGGGTATTACTGGTCAGCTTACTGGTAGCCGT 39126 || ||||||||||| || || ||||| |||||| ||||||| | |||||||||||| Sbjct 10 CCTGACCACAGCCCCTCGGTGAAGTCCGTGGGTGTTACTGGCGGTATGACTGGTAGCCGT 69 Query 39127 GCTGATATCATCATTGCGGATGACGTGGAGATTCCCGGTAACTCTGCAACCCAAGGCGCT 39186 ||||| ||| |||||||||||||||| ||| | ||||| ||||||| || || ||| Sbjct 70 GCTGACATCCTCATTGCGGATGACGTTGAGGTCCCCGGCAACTCTGGCACACAGTCCGCA 129 Query 39187 CGTGAGAAACTCTGGACGCTGGTTCAGGAGTTCGCCGCACTGTTGAAACCTCTGCCGACT 39246 | || | || | |||||| |||| |||| || | |||| ||| ||| Sbjct 130 AGGGATCACCTTGGCGAGCTGGTAAAGGAATTCGATGCGATCCTGAAGCCT-----GACG 184 Query 39247 AGCCGTGTTATCTATCTGGGTACACCTCAGACCGAGATGACGCTCTACAAGGAACTTGAG 39306 || | ||||| |||| || || |||||||| ||||| ||||||| |||||||||| Sbjct 185 GTACG-ATCATCTACTTGGGAACCCCACAGACCGAAATGACCCTCTACAGGGAACTTGAG 243 Query 39307 GACAACCGTGGGTACTCCACCATTATCTGGCCTGCACAGTATCCTCGCTCCAAAGAGGAG 39366 | |||| || ||||| || | ||||||||||||| || ||||| | | || Sbjct 244 G---ACCGCGGCTACTCGACGACGATCTGGCCTGCACGATACCCTCG---GGATGTGGCT 297 Query 39367 GACCT---GTACTA-TGG--CGAC---------------CGACTGGCCC---CGATGCTC 39402 ||||| || ||| ||| || | || |||| || | |||||| Sbjct 298 GACCTTGAGTCCTACTGGCACGCCAAGGGCAAGCGCTCACGTCTGGACCTTACCATGCTC 357 Query 39403 CGTAGTGAGTACGATGAGGACAAAGAGGGCCTCAGCAGTCAGCCTACTGACCCGGTTCGA 39462 | ||| || || ||| ||| || | | ||||||| ||||| ||||| Sbjct 358 ---AAGGAGCTGGAAGACGAC---GAGAAGCTGTTCTGGAAGCCTACAGACCCTATTCGA 411 Query 39463 TTCGACTCCATG--GACCTTCAGGAACGTGAGGTGGAATACGGCAAGGCTGGCTATACGC 39520 ||||| ||| ||||| | || || || | ||| ||||||| ||||| | | Sbjct 412 TTCGA--TGATGAAGACCTGCGTGAGCGCGAACTCTCATATGGCAAGGGTGGCTTCGCTC 469 Query 39521 TTCAGTTCATGCTCAACCCGAACCTCAGTGACGCCGAGAAGTACCCG 39567 | ||||||||||||||||||||||| || ||| ||||||||||||| Sbjct 470 TACAGTTCATGCTCAACCCGAACCTTAGCGACATCGAGAAGTACCCG 516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130836012306132