Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq44246 262 4e-65 seq54337 89.7 5e-13 >seq44246 Length=4029 Score = 262 bits (290), Expect = 4e-65 Identities = 937/1445 (65%), Gaps = 36/1445 (2%) Strand=Plus/Plus Query 93873 GGACAAGAGGTATACCATGGCCACCCCGACCCTGTTCAACGCGGGGACC--CCGGTGCCA 93930 ||| ||| ||| ||| ||| |||| || || |||||||| || ||| |||| || Sbjct 432 GGAGAAGTGGTTCACCCACGCCTCCCCCACGCTCTTCAACGCAGGAACCAACCGG--CCT 489 Query 93931 CAGATGTCTTCGTGTTTCCTGATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGAC 93990 ||| | || || |||||| | || | |||| |||| |||| || || | |||| Sbjct 490 CAGCTCTCCAGCTGCTTCCTGCTCACCATGAAGGACGACAGCATCGAGGGCATCTACGAC 549 Query 93991 AGCCTCAAGGACTGTGCGACCATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCAC 94050 | || ||| | ||||| |||||| || | || || |||||||| | ||| | Sbjct 550 ACGCTGAAGCAGTGTGCACTCATCTCCAAGTCGGCAGGAGGAATCGGTGTGGCCGTCAGC 609 Query 94051 GACGTACGTGCCAGGGGTTCCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTC 94110 | | || ||| || ||||||| ||| ||||| |||| ||||||||| || ||| Sbjct 610 TGCATCCGATCCACCGGGAGCTACATCGCCGGCACCAACGGCAACTCCAACGGGCTGGTC 669 Query 94111 CCTATGCTCCGGGTCTTCAACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGG 94170 || ||||| |||||| ||||||| | || ||||| || |||||||| || | | | Sbjct 670 CCCATGCTGAGGGTCTACAACAACACAGCACGCTATGTCGACCAGGGCGGCAACAAGCGA 729 Query 94171 AAGGGTTCTTTCGCGGTCTATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGAC 94230 || | ||||| | || || ||||| |||||| |||||| | ||| | || Sbjct 730 CCCGGCGCCTTCGCCATGTACCTGGAGCCGTGGCACTTTGACGTGTTCGACTTCCTGGAG 789 Query 94231 CTGCGAAAGAACCACGGCAACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGG 94290 ||| |||||| || || || | |||| |||||||| |||||||||| | ||| Sbjct 790 CTGAAGAAGAACACGGGGAAGGAGGAGCAGAGAGCCAGAGATCTCTTCTACGGCTTGTGG 849 Query 94291 GTGCCAGACCTTTTTATGAAACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCC 94350 | || ||||| || ||||| | || |||| ||| | |||| ||| | |||||| Sbjct 850 ATCCCCGACCTGTTCATGAAGAGGGTGGAGAGCAACCAGGACTGGTCTCTGATGTGTCCC 909 Query 94351 AATGAATGTCCCGGACTGTCCGACGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGT 94410 | || | ||||| ||| ||| || || | ||||| | | || | | Sbjct 910 AGCGAGAGCCCCGGGCTGGACGAGTGCTGGGGGGAGGAGTTTGAGAAGCTCTACACCCAA 969 Query 94411 TACGAATCGCAGGGCAAGGCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATC 94470 || || | ||||| || || | || || | ||| | || ||||| | ||| Sbjct 970 TATGAGCGGGAGGGCCGGGTCAAGCGTGTGGTGAAGGCTCAGCAGGTGTGGCACGCCATC 1029 Query 94471 GTGGACGTACAGGTGGAGACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCC 94530 | || ||| |||| |||| ||||| ||||| ||| ||| ||| | |||| Sbjct 1030 ATCGAGTCCCAGACGGAGTCGGGCACGCCGTACATGCTGTACAAAGACGCCTGCAACAGG 1089 Query 94531 AAGTCCAACCAGCAGCACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTC 94590 ||| |||||||||| |||| || |||||| || || || ||||| || || || Sbjct 1090 AAGAGCAACCAGCAGAACCTGGGAACCATCAAGTGCAGCAACCTCTGCACGGAAATCGTT 1149 Query 94591 GAGTATACTTCTCCGG--ACGAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCA 94648 || ||||| | || | ||| | ||||||||||| |||| ||||||| || || | Sbjct 1150 GA--ATACTCCAGTGGCGATGAGGTCGCTGTGTGTAATCTGGCCTCCATCG--CTCTCAA 1205 Query 94649 CTTTCGTGCGAGATGCCTACACGTCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACT 94708 | | || || | || || ||| | ||| | |||| ||||| | Sbjct 1206 CAT--GTACGTCACCCCCGAGCGG--ACTTTTGACTTCAAGAAACTGGAGTCTGTGACCA 1261 Query 94709 TCGCGGGAAG-GATGGTCTTGAACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTC 94767 ||| ||| || ||||||||||| | | || || | ||||||||||| || Sbjct 1262 -------AAGTGATCGTGAAGAACCTGAACAAGATCATAGAGATTAACTTCTACCCGGTG 1314 Query 94768 CCGGAGGCGGAGAACTCAAACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTC 94827 || ||||| || | || ||| | || |||| ||||| |||||||||||||| | Sbjct 1315 CCCGAGGCCGATCAGTCCAACAAGCGCCACAGGCCGATCGGTATCGGCGTCCAGGGCCTG 1374 Query 94828 GCGGACGCGCTGGTGATGATGCGTCTGCCCTACGACTCTGTCGACGCGGCGGGTTTGAAT 94887 || ||||| | | |||||||| |||| || ||| || | |||| Sbjct 1375 GCCGACGCCTTCATCCTGATGCGTTACCCCTTTGAAAGCCCCGAGGCCCAGCTGCTGAAC 1434 Query 94888 TTGAACATATTCGAAAGCATTTATTACGGGGCCATGAAA-CAATCCGTCCACTTGGCCAG 94946 | | || || || | ||| || |||| ||| || | | | | | ||| |||| Sbjct 1435 ATCCAGATCTTTGAGACCATCTACTACGCCGCCCTGGAGGCCAGCTGCGAACT-GGCCG- 1492 Query 94947 ATCGGACGGCGGGCCAC-ACGAATCGTTCCGCGGATCGCCCTTGGAACAGGGCATTTTTC 95005 | || | ||||| | |||| ||| | | || || ||| | ||||||| | | Sbjct 1493 --CCGA-GCTGGGCCCCTACGACACGTAC-GAGGCTCCCCCGTCAGCAAGGGCATCCTCC 1548 Query 95006 AGTTCGACCTCTGGGGTGTGAAGCCCTCGGGTCTGTACGACTGGGAAGCT-CT--ACGCG 95062 ||| |||| | |||| || |||| | | |||| |||||| ||||| || | | | Sbjct 1549 AGTACGACATGTGGGAGAAGACGCCCACCGACCTGTGGGACTGG-AAGCTGCTGAAGGAG 1607 Query 95063 CTGATGTTATCAAACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCT 95122 ||| ||| ||||| |||| ||| ||||| ||||||| ||||||||||||| Sbjct 1608 AAGATCGC--CAAGCACGGCGTGAGGAACAGCCTGCTGCTGGCCCCGATGCCCACGGCCT 1665 Query 95123 CCACGGCGCAGATCCTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACA 95182 |||| || |||||||| |||||||||||||| |||| ||| |||| |||| | |||| Sbjct 1666 CCACCGCCCAGATCCTGGGCAACAACGAGTCCATCGAGGCCTACACCAGCAACATCTACA 1725 Query 95183 ACAGGCGGGTGCTCGCCGGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGA 95242 | | ||||| || | || || |||| || ||||| || || || |||||||| Sbjct 1726 CCCGCCGGGTCCTGTCAGGAGAGTTCCAGATCGTCAACCCCCATCTGCTCAAGGACCTGA 1785 Query 95243 CGTCTCTGGGTGTGTGGGGTGACAAGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCG 95302 || || ||||||| || || | |||||||| ||| | | |||||| ||| Sbjct 1786 CGGAGAGAGGGCTGTGGGGCGAGGAGATGAAGAACCAGCTGATCGGTAACAACGGATCCA 1845 Query 95303 TCCAG 95307 | ||| Sbjct 1846 TTCAG 1850 >seq54337 Length=1748 Score = 89.7 bits (98), Expect = 5e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 95077 CACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATC 95136 ||||| || | ||| ||||| |||||||||||||||| || ||||| || |||||| Sbjct 1235 CACGGCGTAAGGAACAGTCTGCTGTTGGCCCCCATGCCCACAGCTTCCACTGCCCAGATC 1294 Query 95137 CTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTC 95196 || |||||||| ||||| | || || | |||| |||| | |||| | | |||||||| Sbjct 1295 CTGGGCAACAATGAGTCCATTGAGCCGTACACCAGCAACATCTACACCCGCAGGGTGCTC 1354 Query 95197 GCCGGGGAATTCCCCGTCATCA 95218 | || || || | |||| || Sbjct 1355 TCTGGAGAGTTTCAGGTCAGCA 1376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 491473474611920