Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq44246 224 1e-53 seq152719 86.0 6e-12 seq103378 86.0 6e-12 >seq44246 Length=4029 Score = 224 bits (248), Expect = 1e-53 Identities = 919/1425 (64%), Gaps = 53/1425 (4%) Strand=Plus/Minus Query 153075 TTGCTAGTGAAAGGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTC 153134 ||||| ||| | | || | ||| ||||| ||||| || || || || |||| || || Sbjct 1717 TTGCTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTG 1658 Query 153135 GGCATGTACGCCACCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGTCCTTCAAC 153194 ||||| |||| || || |||| || ||||||| || | ||||||| | Sbjct 1657 GGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGCTTGGCGATCTTCTCCTTCAGC 1598 Query 153195 GCCTGCCAATCCCACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACACTCCT 153254 || ||| |||||||| | | || ||| | ||||||||||||||| | | || Sbjct 1597 AGCTTCCAGTCCCACAGGTCGGTGGGCGTCTTCTCCCACATGTCGTACTGGAGGATGCCC 1538 Query 153255 CGACTGGCGGGACTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTG-GGCCAGTTCGCA 153313 ||| |||| ||| | |||| |||| ||| || | |||||||||||| Sbjct 1537 TTGCTGACGGGGGAGCCT-CGTACGTGTCGTAGGGGCCCA-GCTCGGCGGCCAGTTCGCA 1480 Query 153314 GCTAGCCTCGAGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCCGC 153373 ||| ||||| || ||| | ||||| ||||| || ||| || | || || | || Sbjct 1479 GCTGGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATCTGGATGTTCAGCAGCTGGGC 1420 Query 153374 TTCTTCGCTCTCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACC 153433 || ||| || | || |||| ||| | |||||||||||||| ||||||| || Sbjct 1419 CTCGGGGCTTTCAAAGGGGTAACGCATCAGGATGAAGGCGTCGGCCAGGCCCTGGACGCC 1360 Query 153434 GACGCCGATGGGTCGATGCTTCTCGTTG--CTGC---GCCTCGCGCTCGCTATGGGATAG 153488 || ||||| || | || || |||| ||| |||||| || | || ||| Sbjct 1359 GATACCGATCGGCCTGTGGCGCTTGTTGGACTGATCGGCCTCGGGCACC-----GGGTAG 1305 Query 153489 TGATTGCGATCGATAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGT 153548 || || || || ||||| ||||| ||| | |||||| || | | || ||| Sbjct 1304 AAGTTAATCTCTATGATCTTGTTCAGGTTCTTCACGATCACTTTGGTCACAGACTCCAGT 1245 Query 153549 TTCTCGAAATCATAGGTCATTTCGTCGACG-CGTACGCATCGATTCACGGCAATAGACGC 153607 |||| ||| ||| | ||| ||| | | ||||| || || | || || || || Sbjct 1244 TTCTTGAAGTCAAAAGTCCGCTCGGGGGTGACGTAC--ATG--TTGAGAGCGATGGAGGC 1189 Query 153608 CAGATTACAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCGCAGAGGTT 153667 ||||||||| || || ||| ||| | | ||| | ||||| || | ||||||||| Sbjct 1188 CAGATTACACACAGCGACCTCATCGCCACTGGAGTATTCAACGATTTCCGTGCAGAGGTT 1129 Query 153668 GCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAA 153727 |||||| || ||| |||| || ||||| ||||| || | ||||| ||||||||| | Sbjct 1128 GCTGCACTTGATGGTTCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTA 1069 Query 153728 GAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGAT--------AAACCTATGC 153779 ||||||||||| ||| | ||| || | |||| ||| | ||| ||| Sbjct 1068 CAGCATGTACGGCGTGCCCGACTCCGTCTGGGACTCGATGATGGCGTGCCACACC--TGC 1011 Query 153780 AGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCGTACAGT 153839 | ||| | | ||| |||| || |||||||| | ||| ||| | ||| || Sbjct 1010 TGAGCCTTCAC---CACACGCT--TGA-CCCGGCCCTCCCGCTCATATTGGGTGTAGAGC 957 Query 153840 CGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACT-GATGCGGACACATCAG 153898 ||||||||| || || |||| ||| | || ||||| | || | || ||||||||||| Sbjct 956 TTCTCAAACTCCTCCCCCCAGCACTCGTCCAGCCCGGGGCTCTCGCTG-GGACACATCAG 898 Query 153899 CGACCACATATCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTA 153958 ||||| | || | | || | ||||||||| || || | ||| | |||| Sbjct 897 AGACCAGTCCTGGTTGCTCTCCACCCTCTTCATGAACAGGTCGGGGATCCACAAGCCGTA 838 Query 153959 CATGAGGTCGC--GCGCCTTGCAATCCTCCGCGCCCATGTTGCGTTTCAGATTGAGCACG 154016 | ||| || | || | ||| |||||| ||| |||| ||||| | || | | Sbjct 837 GAAGAGATCTCTGGCTCTCTGC--TCCTCCTTCCCCGTGTTCTTCTTCAGCTCCAGGAAG 780 Query 154017 CTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGC---TTT 154073 | | ||| |||||| || || | ||| | ||| | ||| || ||| || Sbjct 779 TCGAACACGTCAAAGTGCCACGGCTCCAGGTACATGGCGAAGGCGCCGGGTCGCTTGTTG 720 Query 154074 CCGCCCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCG 154133 |||||||| ||||| | ||| | | |||||| |||| | || |||||| |||| ||| Sbjct 719 CCGCCCTGGTCGACATAGCGTGCTGTGTTGTTGTAGACCCTCAGCATGGGGACCAGCCCG 660 Query 154134 CTTGCGGTGCCGTTGGTCGAATTGATCTTGCTGCCGCGGGCGCGCACTTGATGC--ACGT 154191 | | | |||||||||| ||| | ||| ||| || || | || || ||| Sbjct 659 TTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTCCCGGTGGATCGGA--TGCAGCTGACGG 602 Query 154192 TAACGCCAATGCCGCC-GCCGTACTTTGATATGGCAGCGCAGTCGCCCAGCGTCCTGTAG 154250 || || || || || |||| |||| || ||| || || | |||||| |||| Sbjct 601 CCACACCGATTCCTCCTGCCG-ACTTGGAGATGAGTGCACACTGCTTCAGCGTGTCGTAG 543 Query 154251 ATGCCGTCGATGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGCGGAATG 154310 ||||| |||||||| ||||| | | ||||| ||| || | | || || | Sbjct 542 ATGCCCTCGATGCTGTCGTCCTTCATGGTGAGCAGGAAGCAGCTGGAGAGCTGAGGCCGG 483 Query 154311 CGCGTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCATCATG 154370 ||||| || ||||| ||||| ||||| || ||| || | | || | Sbjct 482 TTGGTTCCTGCGTTGAAGAGCGTGGGGGAGGCGTGGGTGAACCACTTCTCCGAGAGCAGG 423 Query 154371 CGGTACGTTTCGATGGCGTCTTCGATATCATCGCC--GTGAATGCCGAGCGCGACGCGCA 154428 ||| || ||||||||| | |||||||| || | ||| || |||| || || | || Sbjct 422 TTGTAGGTCTCGATGGCGGCGTCGATATC--CGTCTTGTGGATTCCGACCGACACCCTCA 365 Query 154429 TGAGCATGTGCTGCGGACGTTCGGCGACTCTATTGTCAATCTTCA 154473 |||||||||||||||| || || || ||| | || ||||||| Sbjct 364 TGAGCATGTGCTGCGGCCGCTCCGCCACTTTGCCGTTGATCTTCA 320 >seq152719 Length=2073 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| ||| |||| || | ||| ||| | || || || || ||||| || || | Sbjct 500 CCTCCTCTCAAGCGCAGCACAAGATGGATGGTGGATTCTTTCTGGATGTTATAATCTGAC 559 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 || || || || || || || || |||| | |||| || | ||| || || ||||| Sbjct 560 ATGGTGCGACCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCAGGAGGG 619 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || || || ||| || ||||| | || | ||||||| | | || ||| Sbjct 620 ATGCCCTCCTTATCCTGGATCTTAGCTTTTACATTCTCAATGGTGTCGCTGGGTTCAACC 679 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || ||||||||||| || || ||||| |||||||| Sbjct 680 TCCAGAGTGATAGTCTTACCAGTCAGGGTCTTCACAAAGATCTGCAT 726 >seq103378 Length=1867 Score = 86.0 bits (94), Expect = 6e-12 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 153640 TGTACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGAT 153699 |||||| ||| ||||| | ||| || |||||| |||| ||| |||| ||| ||||| | Sbjct 1784 TGTACTCCACTATCTCTGTGCACAGATTGCTGGATTTGATGGTTCCCAGATTCTGCTGGT 1725 Query 153700 TGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGG 153739 |||| || | ||||| ||||| ||| ||||||||||||| Sbjct 1724 TGCTCTTCCCGTTGCAGGCGTCCTTGTAGAGCATGTACGG 1685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 493002563953440