Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq44246 224 1e-53
seq152719 86.0 6e-12
seq103378 86.0 6e-12
>seq44246
Length=4029
Score = 224 bits (248), Expect = 1e-53
Identities = 919/1425 (64%), Gaps = 53/1425 (4%)
Strand=Plus/Minus
Query 153075 TTGCTAGTGAAAGGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTC 153134
||||| ||| | | || | ||| ||||| ||||| || || || || |||| || ||
Sbjct 1717 TTGCTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTG 1658
Query 153135 GGCATGTACGCCACCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGTCCTTCAAC 153194
||||| |||| || || |||| || ||||||| || | ||||||| |
Sbjct 1657 GGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGCTTGGCGATCTTCTCCTTCAGC 1598
Query 153195 GCCTGCCAATCCCACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACACTCCT 153254
|| ||| |||||||| | | || ||| | ||||||||||||||| | | ||
Sbjct 1597 AGCTTCCAGTCCCACAGGTCGGTGGGCGTCTTCTCCCACATGTCGTACTGGAGGATGCCC 1538
Query 153255 CGACTGGCGGGACTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTG-GGCCAGTTCGCA 153313
||| |||| ||| | |||| |||| ||| || | ||||||||||||
Sbjct 1537 TTGCTGACGGGGGAGCCT-CGTACGTGTCGTAGGGGCCCA-GCTCGGCGGCCAGTTCGCA 1480
Query 153314 GCTAGCCTCGAGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCCGC 153373
||| ||||| || ||| | ||||| ||||| || ||| || | || || | ||
Sbjct 1479 GCTGGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATCTGGATGTTCAGCAGCTGGGC 1420
Query 153374 TTCTTCGCTCTCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACC 153433
|| ||| || | || |||| ||| | |||||||||||||| ||||||| ||
Sbjct 1419 CTCGGGGCTTTCAAAGGGGTAACGCATCAGGATGAAGGCGTCGGCCAGGCCCTGGACGCC 1360
Query 153434 GACGCCGATGGGTCGATGCTTCTCGTTG--CTGC---GCCTCGCGCTCGCTATGGGATAG 153488
|| ||||| || | || || |||| ||| |||||| || | || |||
Sbjct 1359 GATACCGATCGGCCTGTGGCGCTTGTTGGACTGATCGGCCTCGGGCACC-----GGGTAG 1305
Query 153489 TGATTGCGATCGATAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGT 153548
|| || || || ||||| ||||| ||| | |||||| || | | || |||
Sbjct 1304 AAGTTAATCTCTATGATCTTGTTCAGGTTCTTCACGATCACTTTGGTCACAGACTCCAGT 1245
Query 153549 TTCTCGAAATCATAGGTCATTTCGTCGACG-CGTACGCATCGATTCACGGCAATAGACGC 153607
|||| ||| ||| | ||| ||| | | ||||| || || | || || || ||
Sbjct 1244 TTCTTGAAGTCAAAAGTCCGCTCGGGGGTGACGTAC--ATG--TTGAGAGCGATGGAGGC 1189
Query 153608 CAGATTACAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCGCAGAGGTT 153667
||||||||| || || ||| ||| | | ||| | ||||| || | |||||||||
Sbjct 1188 CAGATTACACACAGCGACCTCATCGCCACTGGAGTATTCAACGATTTCCGTGCAGAGGTT 1129
Query 153668 GCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAA 153727
|||||| || ||| |||| || ||||| ||||| || | ||||| ||||||||| |
Sbjct 1128 GCTGCACTTGATGGTTCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTA 1069
Query 153728 GAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGAT--------AAACCTATGC 153779
||||||||||| ||| | ||| || | |||| ||| | ||| |||
Sbjct 1068 CAGCATGTACGGCGTGCCCGACTCCGTCTGGGACTCGATGATGGCGTGCCACACC--TGC 1011
Query 153780 AGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCGTACAGT 153839
| ||| | | ||| |||| || |||||||| | ||| ||| | ||| ||
Sbjct 1010 TGAGCCTTCAC---CACACGCT--TGA-CCCGGCCCTCCCGCTCATATTGGGTGTAGAGC 957
Query 153840 CGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACT-GATGCGGACACATCAG 153898
||||||||| || || |||| ||| | || ||||| | || | || |||||||||||
Sbjct 956 TTCTCAAACTCCTCCCCCCAGCACTCGTCCAGCCCGGGGCTCTCGCTG-GGACACATCAG 898
Query 153899 CGACCACATATCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTA 153958
||||| | || | | || | ||||||||| || || | ||| | ||||
Sbjct 897 AGACCAGTCCTGGTTGCTCTCCACCCTCTTCATGAACAGGTCGGGGATCCACAAGCCGTA 838
Query 153959 CATGAGGTCGC--GCGCCTTGCAATCCTCCGCGCCCATGTTGCGTTTCAGATTGAGCACG 154016
| ||| || | || | ||| |||||| ||| |||| ||||| | || | |
Sbjct 837 GAAGAGATCTCTGGCTCTCTGC--TCCTCCTTCCCCGTGTTCTTCTTCAGCTCCAGGAAG 780
Query 154017 CTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGC---TTT 154073
| | ||| |||||| || || | ||| | ||| | ||| || ||| ||
Sbjct 779 TCGAACACGTCAAAGTGCCACGGCTCCAGGTACATGGCGAAGGCGCCGGGTCGCTTGTTG 720
Query 154074 CCGCCCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCG 154133
|||||||| ||||| | ||| | | |||||| |||| | || |||||| |||| |||
Sbjct 719 CCGCCCTGGTCGACATAGCGTGCTGTGTTGTTGTAGACCCTCAGCATGGGGACCAGCCCG 660
Query 154134 CTTGCGGTGCCGTTGGTCGAATTGATCTTGCTGCCGCGGGCGCGCACTTGATGC--ACGT 154191
| | | |||||||||| ||| | ||| ||| || || | || || |||
Sbjct 659 TTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTCCCGGTGGATCGGA--TGCAGCTGACGG 602
Query 154192 TAACGCCAATGCCGCC-GCCGTACTTTGATATGGCAGCGCAGTCGCCCAGCGTCCTGTAG 154250
|| || || || || |||| |||| || ||| || || | |||||| ||||
Sbjct 601 CCACACCGATTCCTCCTGCCG-ACTTGGAGATGAGTGCACACTGCTTCAGCGTGTCGTAG 543
Query 154251 ATGCCGTCGATGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGCGGAATG 154310
||||| |||||||| ||||| | | ||||| ||| || | | || || |
Sbjct 542 ATGCCCTCGATGCTGTCGTCCTTCATGGTGAGCAGGAAGCAGCTGGAGAGCTGAGGCCGG 483
Query 154311 CGCGTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCATCATG 154370
||||| || ||||| ||||| ||||| || ||| || | | || |
Sbjct 482 TTGGTTCCTGCGTTGAAGAGCGTGGGGGAGGCGTGGGTGAACCACTTCTCCGAGAGCAGG 423
Query 154371 CGGTACGTTTCGATGGCGTCTTCGATATCATCGCC--GTGAATGCCGAGCGCGACGCGCA 154428
||| || ||||||||| | |||||||| || | ||| || |||| || || | ||
Sbjct 422 TTGTAGGTCTCGATGGCGGCGTCGATATC--CGTCTTGTGGATTCCGACCGACACCCTCA 365
Query 154429 TGAGCATGTGCTGCGGACGTTCGGCGACTCTATTGTCAATCTTCA 154473
|||||||||||||||| || || || ||| | || |||||||
Sbjct 364 TGAGCATGTGCTGCGGCCGCTCCGCCACTTTGCCGTTGATCTTCA 320
>seq152719
Length=2073
Score = 86.0 bits (94), Expect = 6e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| |||| ||| |||| || | ||| ||| | || || || || ||||| || || |
Sbjct 500 CCTCCTCTCAAGCGCAGCACAAGATGGATGGTGGATTCTTTCTGGATGTTATAATCTGAC 559
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
|| || || || || || || || |||| | |||| || | ||| || || |||||
Sbjct 560 ATGGTGCGACCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCAGGAGGG 619
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567
|| || || || || ||| || ||||| | || | ||||||| | | || |||
Sbjct 620 ATGCCCTCCTTATCCTGGATCTTAGCTTTTACATTCTCAATGGTGTCGCTGGGTTCAACC 679
Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|| | || | || ||||||||||| || || ||||| ||||||||
Sbjct 680 TCCAGAGTGATAGTCTTACCAGTCAGGGTCTTCACAAAGATCTGCAT 726
>seq103378
Length=1867
Score = 86.0 bits (94), Expect = 6e-12
Identities = 79/100 (79%), Gaps = 0/100 (0%)
Strand=Plus/Minus
Query 153640 TGTACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGAT 153699
|||||| ||| ||||| | ||| || |||||| |||| ||| |||| ||| ||||| |
Sbjct 1784 TGTACTCCACTATCTCTGTGCACAGATTGCTGGATTTGATGGTTCCCAGATTCTGCTGGT 1725
Query 153700 TGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGG 153739
|||| || | ||||| ||||| ||| |||||||||||||
Sbjct 1724 TGCTCTTCCCGTTGCAGGCGTCCTTGTAGAGCATGTACGG 1685
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 493002563953440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |