Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_011357.1 Length=62147 Score E Sequences producing significant alignments: (Bits) Value seq501356 185 3e-42 seq438949 100 1e-16 >seq501356 Length=950 Score = 185 bits (204), Expect = 3e-42 Identities = 385/572 (67%), Gaps = 1/572 (0%) Strand=Plus/Minus Query 113 TTTACCAGTTTCGCCATCGCAATAGTGGCGTACACATCAGCCATCGCATCGTGGGCGTTG 172 |||| || ||| ||||| || |||||||| || ||||| | ||| ||||| ||||| || Sbjct 599 TTTATCAATTTAGCCATTGCTATAGTGGCATAAACATCTGACATGGCATCATGGGCTTTT 540 Query 173 CTATGTTCAATACCATTCGCTTTGGTTAAATGCTCAAGGCGAAAGCTCGGTAGACCGTCA 232 ||| | |||||||||| ||| | ||| || ||| |||||| || || Sbjct 539 TCATGACTTAAGCCATTCGCTTGGGTAAGCAACTCGAGCTTAAAACTCGGTGAGCCATCT 480 Query 233 TCATTTTCAGGCCAGTTTATTCCTTCCGGGCGCAGGGCATAGCAGGCACGCATAACATCC 292 || || | ||||| || ||||| || ||||| | |||||||| || || | | || Sbjct 479 TCTTTCTTTGGCCAATTAATTCCGTCTGGGCGAAATGCATAGCAAGCCCGAACCAAGTCA 420 Query 293 AGTAAATCCCAGCGCGAGTTATCATGCTGCCAGCTCCAGGCGTAAGGATCGTAGAAATTA 352 | | |||||| || || ||| ||| ||||| | | ||||| ||| |||||| Sbjct 419 ATGATATCCCAACGAGAATTACCATTTTGCCATTCTCGCCCATAAGGGTCGATAAAATTA 360 Query 353 CGATAAAAAACGTTGCGTGTGACTTCGTCGTCGAAACGCACATTGTTGTAGCCCAGAATA 412 ||||| ||| | | || |||| || || || ||||| | ||| ||||||| || | Sbjct 359 CGATAGAAACCATAACGACTGACCTCATCATCAAAACGTAATGAGTTATAGCCCACAACA 300 Query 413 CAGGTCTTCGGTACGGTAAAAAGCGAGTGAATACGGGCGGCAAATGCGGCTTCGTTTTCT 472 ||||| || ||| | |||| |||| | |||||| || | ||||| | | Sbjct 299 CAGGTGTTGGGTTGGCTAAACAGCGTATTAATACGTTTCATGAACTCAGCTTCTGGTACA 240 Query 473 CCTTTCGCCCGAGCTTCCTGCGGGGTAATACCGGTAATTAATACTGCTCCAGGCTGGGGT 532 || || || || || || || || |||||||||| ||| |||| ||| Sbjct 239 CCCTTAAGGTTGGCCAGTTGTGGAGTTATCCCCGTAATTAATATGGCTTCAGGAGACGGT 180 Query 533 AAATAGTCATCCGCGGGCTTGCAGTAAAAGACTTCGGGTTCGCCGATGACATTGAATTCG 592 ||||||||| |||| | ||||| |||||| ||| ||||||||||| | |||| ||| Sbjct 179 AAATAGTCAGGCGCGAGTTTGCAATAAAAGGTTTCAGGTTCGCCGATAATGTTGAGTTCT 120 Query 593 TCATCGGTGCGAATGGCTGCGAACTGTGCAGGGCGATCTAACGCGGGGTGCGTGCCAAAG 652 |||||| ||||| | || ||||| | || |||||| |||| | ||||| Sbjct 119 AGATCGGTTCGAATACCCGCAAACTGAGACGGACGATCTTTGCTTGGGTTTGCCCCAAAT 60 Query 653 GTTTCGTAATCGTGAAAGAGGAAGGTAGGTTG 684 ||||| | |||||| ||| || || ||||| Sbjct 59 GTTTCAT-ATCGTGCCAGAATAACGTGGGTTG 29 >seq438949 Length=727 Score = 100 bits (110), Expect = 1e-16 Identities = 222/328 (68%), Gaps = 14/328 (4%) Strand=Plus/Minus Query 112 TTTTACCAGTTTCGCCATCGCAATAGTGGCGTACACATCAGCCATCGCATCGTGGGC-GT 170 ||||| ||||| |||| |||||||| ||| ||||| | |||||||| || | Sbjct 694 TTTTATTAGTTTAGCCAGTGCAATAGTAGCGGTTACATCGCTTAGTGCATCGTGCGCCGC 635 Query 171 TGCTATGTTCAATACCATTCGCTTTGGTTAAATGCTCAAGGCGAAAGCTCGGTAGACCGT 230 || ||||||||||| || || |||||||||||| | |||||| || ||||| Sbjct 634 AGCG-TGTTCAATACCGTTGGCAACGGTTAAATGCTCTAACTTAAAGCTTGGGCTACCGT 576 Query 231 CATCATTTTCAGGCCAGTTTATTCCTTCCGGGCGCAGGGCATAGCAGGCACGCATAACAT 290 | || ||| ||||| | || || || |||||||| ||||| || ||||||| | || Sbjct 575 CTTCTTTTAACGGCCATTCAATGCCCTCTGGGCGCAGTGCATAACAAGCACGCACTAAAT 516 Query 291 CCAGTAAATCCCAGCG-CGA-----GTTATCATGCTGCCAGCTCCAGGCGTAAGGATCGT 344 | | | |||||||| | | ||| | || | | ||| |||| || |||| Sbjct 515 CAATAATGTCCCAGCGACTATTGTTGTTTTTAT-ATTCGCGCT-----CGTACGGGTCGT 462 Query 345 AGAAATTACGATAAAAAACGTTGCGTGTGACTTCGTCGTCGAAACGCACATTGTTGTAGC 404 | || ||||||||||| | || | |||||||| || || || | | |||| || | Sbjct 461 AAAAGTTACGATAAAAGCTATAACGGCTTACTTCGTCATCAAAGCGAATACTGTTATAAC 402 Query 405 CCAGAATACAGGTCTTCGGTACGGTAAA 432 | || |||||| || || || |||| Sbjct 401 CGGCAACACAGGTATTTGGCACACTAAA 374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 197508540658716