Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_011357.1
Length=62147
Score E
Sequences producing significant alignments: (Bits) Value
seq501356 185 3e-42
seq438949 100 1e-16
>seq501356
Length=950
Score = 185 bits (204), Expect = 3e-42
Identities = 385/572 (67%), Gaps = 1/572 (0%)
Strand=Plus/Minus
Query 113 TTTACCAGTTTCGCCATCGCAATAGTGGCGTACACATCAGCCATCGCATCGTGGGCGTTG 172
|||| || ||| ||||| || |||||||| || ||||| | ||| ||||| ||||| ||
Sbjct 599 TTTATCAATTTAGCCATTGCTATAGTGGCATAAACATCTGACATGGCATCATGGGCTTTT 540
Query 173 CTATGTTCAATACCATTCGCTTTGGTTAAATGCTCAAGGCGAAAGCTCGGTAGACCGTCA 232
||| | |||||||||| ||| | ||| || ||| |||||| || ||
Sbjct 539 TCATGACTTAAGCCATTCGCTTGGGTAAGCAACTCGAGCTTAAAACTCGGTGAGCCATCT 480
Query 233 TCATTTTCAGGCCAGTTTATTCCTTCCGGGCGCAGGGCATAGCAGGCACGCATAACATCC 292
|| || | ||||| || ||||| || ||||| | |||||||| || || | | ||
Sbjct 479 TCTTTCTTTGGCCAATTAATTCCGTCTGGGCGAAATGCATAGCAAGCCCGAACCAAGTCA 420
Query 293 AGTAAATCCCAGCGCGAGTTATCATGCTGCCAGCTCCAGGCGTAAGGATCGTAGAAATTA 352
| | |||||| || || ||| ||| ||||| | | ||||| ||| ||||||
Sbjct 419 ATGATATCCCAACGAGAATTACCATTTTGCCATTCTCGCCCATAAGGGTCGATAAAATTA 360
Query 353 CGATAAAAAACGTTGCGTGTGACTTCGTCGTCGAAACGCACATTGTTGTAGCCCAGAATA 412
||||| ||| | | || |||| || || || ||||| | ||| ||||||| || |
Sbjct 359 CGATAGAAACCATAACGACTGACCTCATCATCAAAACGTAATGAGTTATAGCCCACAACA 300
Query 413 CAGGTCTTCGGTACGGTAAAAAGCGAGTGAATACGGGCGGCAAATGCGGCTTCGTTTTCT 472
||||| || ||| | |||| |||| | |||||| || | ||||| | |
Sbjct 299 CAGGTGTTGGGTTGGCTAAACAGCGTATTAATACGTTTCATGAACTCAGCTTCTGGTACA 240
Query 473 CCTTTCGCCCGAGCTTCCTGCGGGGTAATACCGGTAATTAATACTGCTCCAGGCTGGGGT 532
|| || || || || || || || |||||||||| ||| |||| |||
Sbjct 239 CCCTTAAGGTTGGCCAGTTGTGGAGTTATCCCCGTAATTAATATGGCTTCAGGAGACGGT 180
Query 533 AAATAGTCATCCGCGGGCTTGCAGTAAAAGACTTCGGGTTCGCCGATGACATTGAATTCG 592
||||||||| |||| | ||||| |||||| ||| ||||||||||| | |||| |||
Sbjct 179 AAATAGTCAGGCGCGAGTTTGCAATAAAAGGTTTCAGGTTCGCCGATAATGTTGAGTTCT 120
Query 593 TCATCGGTGCGAATGGCTGCGAACTGTGCAGGGCGATCTAACGCGGGGTGCGTGCCAAAG 652
|||||| ||||| | || ||||| | || |||||| |||| | |||||
Sbjct 119 AGATCGGTTCGAATACCCGCAAACTGAGACGGACGATCTTTGCTTGGGTTTGCCCCAAAT 60
Query 653 GTTTCGTAATCGTGAAAGAGGAAGGTAGGTTG 684
||||| | |||||| ||| || || |||||
Sbjct 59 GTTTCAT-ATCGTGCCAGAATAACGTGGGTTG 29
>seq438949
Length=727
Score = 100 bits (110), Expect = 1e-16
Identities = 222/328 (68%), Gaps = 14/328 (4%)
Strand=Plus/Minus
Query 112 TTTTACCAGTTTCGCCATCGCAATAGTGGCGTACACATCAGCCATCGCATCGTGGGC-GT 170
||||| ||||| |||| |||||||| ||| ||||| | |||||||| || |
Sbjct 694 TTTTATTAGTTTAGCCAGTGCAATAGTAGCGGTTACATCGCTTAGTGCATCGTGCGCCGC 635
Query 171 TGCTATGTTCAATACCATTCGCTTTGGTTAAATGCTCAAGGCGAAAGCTCGGTAGACCGT 230
|| ||||||||||| || || |||||||||||| | |||||| || |||||
Sbjct 634 AGCG-TGTTCAATACCGTTGGCAACGGTTAAATGCTCTAACTTAAAGCTTGGGCTACCGT 576
Query 231 CATCATTTTCAGGCCAGTTTATTCCTTCCGGGCGCAGGGCATAGCAGGCACGCATAACAT 290
| || ||| ||||| | || || || |||||||| ||||| || ||||||| | ||
Sbjct 575 CTTCTTTTAACGGCCATTCAATGCCCTCTGGGCGCAGTGCATAACAAGCACGCACTAAAT 516
Query 291 CCAGTAAATCCCAGCG-CGA-----GTTATCATGCTGCCAGCTCCAGGCGTAAGGATCGT 344
| | | |||||||| | | ||| | || | | ||| |||| || ||||
Sbjct 515 CAATAATGTCCCAGCGACTATTGTTGTTTTTAT-ATTCGCGCT-----CGTACGGGTCGT 462
Query 345 AGAAATTACGATAAAAAACGTTGCGTGTGACTTCGTCGTCGAAACGCACATTGTTGTAGC 404
| || ||||||||||| | || | |||||||| || || || | | |||| || |
Sbjct 461 AAAAGTTACGATAAAAGCTATAACGGCTTACTTCGTCATCAAAGCGAATACTGTTATAAC 402
Query 405 CCAGAATACAGGTCTTCGGTACGGTAAA 432
| || |||||| || || || ||||
Sbjct 401 CGGCAACACAGGTATTTGGCACACTAAA 374
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 197508540658716
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |