Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq44246 158 1e-33 seq152719 96.9 3e-15 seq103378 82.4 7e-11 seq54337 82.4 7e-11 >seq44246 Length=4029 Score = 158 bits (174), Expect = 1e-33 Identities = 496/749 (66%), Gaps = 37/749 (5%) Strand=Plus/Minus Query 146044 AGGGCCTTGATGAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGA 146103 ||| |||||| |||| ||||||| | ||| ||||| || | || || || | Sbjct 1783 AGGTCCTTGAGCAGATGGGGGTTGACGATCTGGAACTCTCCTGACAGGACCCGGCGGGTG 1724 Query 146104 TACACGTTGCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTA 146163 || | |||||||||| | | ||||| ||||||||||| || || ||||| || || | Sbjct 1723 TAGATGTTGCTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAG 1664 Query 146164 GCGGTAGGCATGTACGCCACCAGCAAAGAGTTTCTCACGCCGTGTCTTTGA-ATCTTTTC 146222 || || ||||| |||| ||||| ||| ||||||||||| ||| | ||||| || Sbjct 1663 GCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTG-CTTGGCGATCTTCTC 1605 Query 146223 CC---GTAGTTTGGACCAATTCCACAAATGATCCGTGGGATAGATATTGTAGTTGTCGTA 146279 | | || || ||| | ||||| | || ||||| | | | ||||||| Sbjct 1604 CTTCAGCAGCTT---CCAGTCCCACA---GGTCGGTGGGCGTCTTCTCCCACATGTCGTA 1551 Query 146280 ATGCATAGTGCC---GCGGAACAGGGGGCTATTCTCGTACGATTCATAAGGACCGTCGAT 146336 || | |||| || || ||| || |||||||| || || || || | | Sbjct 1550 CTGGAGGATGCCCTTGCTGACGGGGGAGC----CTCGTACGTGTCGTAGGGGCCCA-GCT 1496 Query 146337 CTT-GGCCAGTTCGCAGCTAGCTTCCAGAGCCGAAAAGTATATGGTCTCCGCGATCATGT 146395 | ||||||||||||||| || ||||| || | |||| |||||||| |||| | Sbjct 1495 CGGCGGCCAGTTCGCAGCTGGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATCTGGA 1436 Query 146396 AGTTGACGCTCCTGG-CCTCCTCGCTGTCGTAGGGGATATCG-AGAAGCACAAAGGCGTC 146453 ||| | || |||| |||| ||| || ||||| || || | || | |||||||| Sbjct 1435 TGTTCA-GCAGCTGGGCCTCGGGGCTTTCAAAGGGG-TAACGCATCAGGATGAAGGCGTC 1378 Query 146454 GGCGAGACCCTGTATCCCGACACCAACGGGGCGGTGTTTCTTGTT--ACTGTTCGCAGCG 146511 ||| || ||||| | |||| ||| | || | ||| |||||| |||| ||| | Sbjct 1377 GGCCAGGCCCTGGACGCCGATACCGATCGGCCTGTGGCGCTTGTTGGACTGATCGGC-CT 1319 Query 146512 CCCGCAGTGGGATAGTGGTTGCTGTCGATGATCTTGTTGAGATTACGCACGACAATTTTC 146571 | ||| ||| ||| ||| | || ||||||||||| || || ||||| | ||| Sbjct 1318 CGGGCACCGGG-TAGAAGTTAATCTCTATGATCTTGTTCAGGTTCTTCACGATCACTTTG 1260 Query 146572 GTCAAACGATTCAG---CAGGACATAGTCAAATGTTTTAGTTTTAACGTTGACGCACTTG 146628 |||| | | ||| | || ||||||| || | | ||||| || || Sbjct 1259 GTCACAGACTCCAGTTTCTTGA---AGTCAAAAGTCCGC---TCGGGGGTGACGTACATG 1206 Query 146629 TTGACGGCGATAGAGGCCAAGTTACATACGGCAGTCTCGTCCTTGTCGCAATACTGCACA 146688 |||| ||||| ||||||| ||||| || || ||| || | | || | || Sbjct 1205 TTGAGAGCGATGGAGGCCAGATTACACACAGCGACCTCATCGCCACTGGAGTATTCAACG 1146 Query 146689 ATCTCGGCGCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGTTACTAAACTTG 146748 || || | |||||||||||||||||||||| | |||| || | ||||| || | || Sbjct 1145 ATTTCCGTGCAGAGGTTGCTGCACTTGATGGTTCCCAGGTTCTGCTGGTTGCTCTTCCTG 1086 Query 146749 TTGCAGGGGTCCTTGTAGAGCATGTACGG 146777 ||||||| ||| ||||| ||||||||||| Sbjct 1085 TTGCAGGCGTCTTTGTACAGCATGTACGG 1057 >seq152719 Length=2073 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 126896 AATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGA 126955 || |||| ||| | ||| || || || ||||| || || || ||||| ||| |||||| Sbjct 509 AAGCGCAGCACAAGATGGATGGTGGATTCTTTCTGGATGTTATAATCTGACATGGTGCGA 568 Query 126956 GAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCC 127015 ||| || ||||| || || || |||||| | ||||||||| ||||| ||||||||| Sbjct 569 CCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCAGGAGGGATGCCCTCC 628 Query 127016 TTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTC 127075 || ||| ||| || || | | || | |||||| | || || || | || Sbjct 629 TTATCCTGGATCTTAGCTTTTACATTCTCAATGGTGTCGCTGGGTTCAACCTCCAGAGTG 688 Query 127076 ACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | || || || ||||| || || ||||| |||||||| Sbjct 689 ATAGTCTTACCAGTCAGGGTCTTCACAAAGATCTGCAT 726 >seq103378 Length=1867 Score = 82.4 bits (90), Expect = 7e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 146680 TACTGCACAATCTCGGCGCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGTTA 146739 |||| ||| ||||| | ||| || |||||| | |||||| | |||| ||| | ||||| Sbjct 1782 TACTCCACTATCTCTGTGCACAGATTGCTGGATTTGATGGTTCCCAGATTCTGCTGGTTG 1723 Query 146740 CTAAACTTGTTGCAGGGGTCCTTGTAGAGCATGTACGG 146777 || | |||||||| ||||||||||||||||||||| Sbjct 1722 CTCTTCCCGTTGCAGGCGTCCTTGTAGAGCATGTACGG 1685 >seq54337 Length=1748 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 146071 ACCTGAAACTCGCCGGCGAGAACGCGCCTCAGATACACGTTGCTGGTGAACGGCTCGAAC 146130 ||||||||||| || | ||| || | | || | |||||||||| ||||||| | Sbjct 1371 ACCTGAAACTCTCCAGAGAGCACCCTGCGGGTGTAGATGTTGCTGGTGTACGGCTCAATG 1312 Query 146131 GACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCATGTACGCCACCAGCAAA 146190 ||||| ||||| || || ||||| || || | ||| || |||||| |||| ||||| | Sbjct 1311 GACTCATTGTTGCCCAGGATCTGGGCAGTGGAAGCTGTGGGCATGGGGGCCAACAGCAGA 1252 Query 146191 GAGTTTCTCACGCCGTGTCT 146210 ||| || |||||||| || Sbjct 1251 CTGTTCCTTACGCCGTGCCT 1232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472377342232480