Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_011811.1
Length=84576
Score E
Sequences producing significant alignments: (Bits) Value
seq309203 118 6e-22
seq437693 100 2e-16
>seq309203
Length=1072
Score = 118 bits (130), Expect = 6e-22
Identities = 195/279 (70%), Gaps = 2/279 (1%)
Strand=Plus/Plus
Query 50973 AGAAATGAGCCGTGGCACAACCGACCTGTTCATACACCCTTCTTAGGTGGTATCAACCAG 51032
|||||||| |||| || ||| ||||| | ||||| || | || | | | ||| |
Sbjct 756 AGAAATGAACCGTTCCATAACAGACCTATACATACTCCACTAGGAGATATTGTAAACAAC 815
Query 51033 CTTGGTAACGCAGCCGATGCTGAAGTTTGGTTCACAGATGCTTGTTATCTCCTGTACCGT 51092
|| ||||| || ||||||| ||| ||||||||| |||||| |||||||| || |
Sbjct 816 CTAGGTAATGCTGCCGATGGTGAGGTTTGGTTCTTAGATGCGTGTTATCTTCTTTGGAAG 875
Query 51093 ATCACTGGTGAAGAGAAGTACAAAACTGCACTGGAAAGTGTATTCTTCACAGCGAACGAA 51152
||||| | || | ||||| | || | || |||||| | |||||| || ||
Sbjct 876 GCTACTGGCAAGGATCACTACAAGAAGGCTTTAGATAGTGTACATTACACAGCCAATGAG 935
Query 51153 TATACAGAGATTGACTCAACTGACAAGTTTTTCCGTCAAAGTCTTT-CTGCTGAGACACC 51211
|||||| |||||||| ||| | ||||| |||||| | || | | | ||| | |||||
Sbjct 936 TATACATTCATTGACTCTACTAATAAGTTCTTCCGT-AGAGACATGACAGCTAACACACC 994
Query 51212 TTTTACGGATGCTATCAGTTATGGGTTCTCATACCCTGC 51250
|||||| || | ||| ||||| | | ||| ||||| ||
Sbjct 995 TTTTACCGAAGGTATTAGTTACGACTACTCTTACCCCGC 1033
Score = 91.5 bits (100), Expect = 8e-14
Identities = 151/218 (69%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 49839 TGGGATGCCTATATCAACTATTTCTACAAAGGTCAGGAAATCCCTTCCACACCATCTCGT 49898
||||| || ||| | || ||||| ||||| ||| || ||| |||||| |||
Sbjct 237 TGGGAGGCGTATGTACGCTGGTTCTATAAAGGACAGCCTATTCCTGACACACCTCAACGT 296
Query 49899 TACATCTGTAACTGGATTATCAACGGGAAACAACCTACCCTTGCAGACTATCCAGTAAAC 49958
| | |||||||||||||| || || || | ||| || ||| |||||||| | |||
Sbjct 297 TGGGTTTGTAACTGGATTATAAATGGTAAGGAGCCTGTACTGGCAAACTATCCACTCAAC 356
Query 49959 CCCGAAGAGCCTACTCAGGGTGGATTCAAATGCGTCCCTATCGAGTTCACTAACGGTGTT 50018
||| || |||||||| ||||| ||||| | | || | | | |||||||| ||
Sbjct 357 CCCATTGACCCTACTCATGGTGGTTTCAAGGGTATACCACTAAACTGGACTAACGGACTT 416
Query 50019 GGTCGAATTCCTCATGGTGCTCCTTTTTGGGGTGAATA 50056
||||||| | |||||||||| |||||||| ||
Sbjct 417 ACCAAAATTCCTAAGGGTGCTCCTTACTGGGGTGAGTA 454
>seq437693
Length=1718
Score = 100 bits (110), Expect = 2e-16
Identities = 185/268 (69%), Gaps = 10/268 (4%)
Strand=Plus/Plus
Query 50923 TTAACTATGCTTCTAAAGT--TCCTGTTGATTTTGGTGGTTACGAGTTTGCAAGAAATGA 50980
|||||| |||| | | || |||||| || |||||||||| ||| ||||||||
Sbjct 931 TTAACTTTGCTAC--ACGTAATCCTGTAGAGCATGGTGGTTACATCATTGACAGAAATGA 988
Query 50981 GCCGTGGCACAACCGACCTGTTCATACACCCTTCTTAGGTGGTATC---AACCAGCTTGG 51037
||| | || ||| |||| | || || ||||| ||||| || || | | ||
Sbjct 989 GCCATTCCATAACAGACCATTGCACACTCCCTT---AGGTGAGATTGTGAATAACATGGG 1045
Query 51038 TAACGCAGCCGATGCTGAAGTTTGGTTCACAGATGCTTGTTATCTCCTGTACCGTATCAC 51097
|||||| || |||| |||||| |||||| |||||||||||| | ||| | ||
Sbjct 1046 TAACGCTGCTGATGGTGAAGTATGGTTCTTAGATGCTTGTTACTTAATGTGGAAAGTTAC 1105
Query 51098 TGGTGAAGAGAAGTACAAAACTGCACTGGAAAGTGTATTCTTCACAGCGAACGAATATAC 51157
||| ||| |||||||| | ||| |||| |||| || |||||||||||||| ||
Sbjct 1106 CGGTAGAGAAAAGTACAAGAAGGCATTGGACTGTGTTCATTTTACAGCGAACGAATACAC 1165
Query 51158 AGAGATTGACTCAACTGACAAGTTTTTC 51185
| || ||||| | | | || ||||||
Sbjct 1166 ATTCATCGACTCTAGTAATAAATTTTTC 1193
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 268785849859614
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |