Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_012638.1 Length=165429 Score E Sequences producing significant alignments: (Bits) Value seq449735 194 2e-44 seq506238 143 3e-29 seq487923 107 2e-18 seq509673 105 7e-18 seq351952 104 2e-17 seq326422 89.7 5e-13 seq510909 86.0 7e-12 seq511551 84.2 2e-11 >seq449735 Length=3187 Score = 194 bits (214), Expect = 2e-44 Identities = 496/742 (67%), Gaps = 25/742 (3%) Strand=Plus/Minus Query 138063 TTTGTTGGAATAGCAATTTCACAGCACAAGTTACTCTGACGAATAGGTGCCTTTTCACGA 138122 || ||||| | |||||||| | || || ||| || |||||||||||| || | | Sbjct 755 TTAGTTGGTAATGCAATTTCTAAACATAAATTAGATTGGCGAATAGGTGCCACTTTAGCA 696 Query 138123 ATAAACGGAGTGTAGTTATTCGTATTATCAATGAACTGCACATAAATCCTTGCTGTTCCT 138182 || ||||| ||| |||| | |||| | || | ||||| | | || | | Sbjct 695 ATGAACGGGCTGTGCGTATTACAGTGGTCAACGTTTTGTAAGTAAATACGACCGGTACTT 636 Query 138183 GAACGTTCAGTCATGAGCAA---TTCA-AATAGTTCACGGGCTTTAATACGCTTTTTACG 138238 | |||||| || |||| || | || |||||| |||||||| || |||||||| Sbjct 635 GCACGTTCT----TGCGCAAACATTGAGAACAGTTCAATAGCTTTAATGCGTTTTTTACG 580 Query 138239 AAT--ATTAGGGTCTTTTTCTGCTGCTTCGTATAATTCACGG-AAACG-GTCTTGGTCTT 138294 ||| ||| | |||| ||| | | | |||| | || |||| ||||||||||| Sbjct 579 AATTGATTCG--TCTTGTTCGTATTTTAC--ATAAAGCGCGTCAAACTCGTCTTGGTCTT 524 Query 138295 TAAAATAAGAATAATAAAGCTCGCCACCCATTTCGTGTGGACTGAACAAAGTAATGTAAT 138354 |||| | | || ||||| ||| || || || || ||||| |||||||| | Sbjct 523 CAAAAAATGCATCGTAAAG---GCCTGGCACATCAGAGGGGCTAAACAAGGTAATGTAGT 467 Query 138355 CGTTCTTTCCGAATCGTTCCATCATCAAATCATTCAGCTGAACACCATAATCCATATGAC 138414 ||| || || || ||| | | ||| | ||| || || ||||| | ||||| Sbjct 466 CGTCTTTAATTAAACGCGAGTACATTAGTTTATTAAACTGTACGCCGTAATCTAAATGAC 407 Query 138415 GAATGCGGTTTTCTTCTACGCCTTTGTTATTTTTCAAAACGAGAAGATTTTCAACTTCCA 138474 | | |||||| || || || || ||||||||| | || | || ||||| ||||| | Sbjct 406 GCACGCGGTTGTCATCAACCCCGCGGTTATTTTTAAGTACTAACAGGTTTTCTACTTCTA 347 Query 138475 AATGCCAAATAGGATA--ATAAGCAGTAGCAGCGCCGCCACGAATTCCACCCTGTGAACA 138532 ||||||||| || || | ||| || || ||||||||||| | || || || ||||| Sbjct 346 AATGCCAAAGCGGGTAGAACAAG--GTTGCTGCGCCGCCACGTACACCGCCTTGCGAACA 289 Query 138533 TGATTTAACAGCAGTCTGAAAATGTTTCCAAAAAGGAATAACACCAGTATGGCGTACTTC 138592 |||||| || || ||||| || || ||||||||||| ||| |||||| |||| Sbjct 288 GCTTTTAACCGCTGTTTGAAAGTGCTTATAAAAAGGAATACAACCCGTATGGTACGCTTC 229 Query 138593 ACCCATGCCAATCTTAGAACCTTCGGCACGAATCATACCAACGTTAATACCAATTCCAGC 138652 || ||| ||| | ||| |||||||| ||| ||||||| ||||| || || Sbjct 228 GCCATTGCGAATGTGGCTACCCAGTGCACGAATGCGACCTGCGTTAATGCCAATGCCGGC 169 Query 138653 ACGTTTAGAGATATATTCAACAATTGAAGCGGAAGCCTTATTGATAGACTTCAATG-AAT 138711 ||||| || | |||| |||||||| || || | || || || |||| | | Sbjct 168 ACGTTGCGATACGTATTTAACAATTGCAGACGAGGTGGCGTTAATTGA-ATCAAGGCTGT 110 Query 138712 CACCTGCCTCAATAACAACACATGAACTAAACTGCCGAGTTGGAGTACGGCAACCAGCCA 138771 | || ||| || | ||||| || |||||||| || ||||| ||||| ||| |||| Sbjct 109 CGCCACACTCTATTAATACACACGAGCTAAACTGGCGTGTTGGCGTACGAACACCTGCCA 50 Query 138772 TAATAGGAGTTGGCAATGAAAT 138793 |||| || || || | |||||| Sbjct 49 TAATTGGCGTAGGTAGTGAAAT 28 >seq506238 Length=275 Score = 143 bits (158), Expect = 3e-29 Identities = 142/184 (77%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 60960 ATTACAAACTCTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAG 61019 ||||||| | || ||||| ||||| | | ||||| |||| ||||| || || | | Sbjct 38 ATTACAATGTTTCTGTAAATGTACGTGTTAATACGTCTTGCTGTTGTTCTGGTGTTAATG 97 Query 61020 AGTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGAT 61079 ||||||| || ||||| ||||| |||||||| || || | || ||||||||||| || | Sbjct 98 AGTTAAAACGCACTGCGTAACCTGATACACGAATAGTTAATTGTGGATATTTTTCAGGGT 157 Query 61080 GCTTAACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCAC 61139 | ||||| |||||||||| ||||||||||| | || || ||||| | |||||||||| Sbjct 158 GTTTAACAGCATCTTCCAATGTTTCACGACGTAACACATTCACGTTTAAATGTTGACCAC 217 Query 61140 CTTC 61143 |||| Sbjct 218 CTTC 221 >seq487923 Length=1072 Score = 107 bits (118), Expect = 2e-18 Identities = 150/202 (74%), Gaps = 9/202 (4%) Strand=Plus/Minus Query 22879 ATACTAATTTATCTAATACGTATTTTTGCCATGCATAATCATTACGGAATCCGAAGACCA 22938 ||| |||||||| |||| || || |||||||| ||||||||| |||||||| || Sbjct 528 ATAGTAATTTAT---ATACATACTTATGCCATGCTAAATCATTACCAAATCCGAATACTG 472 Query 22939 CGTCATTTGAGCGCATGCTT-ACTAC-TGCATTGACTTTCTTATCACGAATCAGGTACT- 22995 ||||| ||||||| || || || | | ||| | ||| ||||||||||| | |||| Sbjct 471 CGTCACATGAGCGC-TGATTGACAATATAGATTAA-TTTATTATCACGAATAAA-TACTT 415 Query 22996 GTACTGTATTAGTACACATGAAATCTGACATACCATCTTTATTGTAGTCAAATTGCATGG 23055 | || |||||||||| || ||||||||||| ||| |||| | ||| ||| || | Sbjct 414 GAACATTATTAGTACAAATAAAATCTGACATTTCATTAGTATTCCATTCACTTTGAATAG 355 Query 23056 ATGGACGAGTATAAATCATGAT 23077 | || | |||||||||||| || Sbjct 354 AAGGTCTAGTATAAATCATAAT 333 >seq509673 Length=441 Score = 105 bits (116), Expect = 7e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 138386 ATTCAGCTGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACGCCTTTGTTATT 138445 ||| | ||| || || |||||||||||||| | ||||| ||||| ||||| |||||| Sbjct 221 ATTTAACTGTACGCCGTAATCCATATGACGGACACGGTTGTCTTCCACGCCGCGGTTATT 280 Query 138446 TTTCAAAACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGC 138505 ||||| || | | |||||||| |||||||| | || ||| | || || || Sbjct 281 TTTCAGTACCAATAATGACTCAACTTCTAAATGCCATAATGGGTAAAACAACGTCGCTGC 340 Query 138506 GCCGCCACGAATTCCACCCTGTGAACATGATTTAACAGCAGTCTGAAAATGTTTCCAAAA 138565 |||||||| | || || ||||| || ||||||||||||| || || |||| | || Sbjct 341 ACCGCCACGGACGCCGCCTTGTGAGCAGCATTTAACAGCAGTTTGGAACAGTTTATAGAA 400 Query 138566 AGGAATAACACCAGTATG 138583 || ||| ||| ||||| Sbjct 401 TGGGATACAACCCGTATG 418 >seq351952 Length=416 Score = 104 bits (114), Expect = 2e-17 Identities = 126/172 (73%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 60974 GTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAACT 61033 ||||||||||| | ||| || || ||| ||||| | ||| | |||||||| || ||| Sbjct 34 GTAAAGGTACGTGTGATTACATCTTGCTTTTGTTCTGCAGTTAACGAGTTAAATCGTACT 93 Query 61034 GCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCATCT 61093 || ||||| |||||||| || || | || ||||| || || |||| | | |||||| Sbjct 94 GCGTAACCCGATACACGAATTGTTAATTGTGGATACTTATCTGGATTTTCCATTGCATCC 153 Query 61094 TCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTCAA 61145 | ||||||| || || |||||||| | ||||||||||||||||| Sbjct 154 AATAACATTTCACGGTTCATTACATTAACGTTTAAGTGTTGACCACCTTCAA 205 >seq326422 Length=2068 Score = 89.7 bits (98), Expect = 5e-13 Identities = 91/115 (79%), Gaps = 4/115 (3%) Strand=Plus/Plus Query 68643 GCGCTCTACCAAACTGAGCTACAC--GGAGTAAATTAAATTGGAGCGGATAATGAGAATC 68700 |||||||||||| |||||||| | | | | |||| |||||||| | | ||||| Sbjct 291 GCGCTCTACCAA-CTGAGCTATATCAGCATCACCATAAACTGGAGCGGGCAGCGGGAATC 349 Query 68701 GAACTCACATCATCAGATTGGAAGTCTGAGGTAAT-GCCATTATACGATATCCGC 68754 |||| | ||||||||| ||||||| |||||||||| ||||||||||||| |||| Sbjct 350 GAACCCGCATCATCAGCTTGGAAGGCTGAGGTAATAGCCATTATACGATGCCCGC 404 >seq510909 Length=431 Score = 86.0 bits (94), Expect = 7e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 60962 TACAAACTCTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAG 61021 |||| ||| | |||||| ||||||| || ||||| ||||||| || ||||| || | Sbjct 339 TACATACTTTTAGTAAATGTACGAGTAATCACGTCTTGCTGCTGCTCAGGAGTGAGCGCA 398 Query 61022 TTAAAGCGAACTGCATAACCGGATACACGGAT 61053 ||||||||||| |||||||| |||||||| || Sbjct 399 TTAAAGCGAACGGCATAACCCGATACACGAAT 430 >seq511551 Length=634 Score = 84.2 bits (92), Expect = 2e-11 Identities = 92/120 (77%), Gaps = 2/120 (2%) Strand=Plus/Minus Query 41107 ATAATATCAGGATACATCCTTTTGCTTGCGCACTCTAGAGCAAGCTGTTTAATATCATAG 41166 ||||||||||| ||||| | || || || ||||||||||| | ||||||||||| |||| Sbjct 345 ATAATATCAGGGTACATACGCTTACTGGCACACTCTAGAGCTAACTGTTTAATATTATAG 286 Query 41167 TTCGGATCGTCTT-TATAAAGATTAACACCTTCTTCAACGAACATAACAAGCTTAGGGAA 41225 || || || || | | ||||| || ||||| |||| || | | |||||||||||| Sbjct 285 TTTGGGTCTTCCTGTTTAAAG-TTGACACCGTCTTTAATAGTTAGGATAAGCTTAGGGAA 227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 525768309988880