Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq44246 197 1e-45
seq103378 91.5 1e-13
>seq44246
Length=4029
Score = 197 bits (218), Expect = 1e-45
Identities = 877/1374 (64%), Gaps = 21/1374 (2%)
Strand=Plus/Plus
Query 122916 CAACATATGCTCATGCGCGTCGCTATAGGCGTGCACG-GACGCGACATCGAAAACGCGAC 122974
|| || ||||||||| | || | | || | ||| |||| || ||||| ||| |
Sbjct 352 CAGCACATGCTCATGAGGGTGTCGGTCGGAATCCACAAGACG-GATATCGACGCCGCCAT 410
Query 122975 CGAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACGCGAGTCCCACTTTGTTCGC 123034
||| || ||| | || | || | || | ||||| ||||| ||||| | |||
Sbjct 411 CGAGACCTACAACCTGCTCTCGGAGAAGTGGTTCACCCACGCCTCCCCCACGCTCTTCAA 470
Query 123035 CGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTTTTGCTCACCTTGCGCGAAGACAG 123094
||| || || || ||||||| | || || || |||||||| || || |||||
Sbjct 471 CGCAGGAACCAACCGGCCTCAGCTCTCCAGCTGCTTCCTGCTCACCATGAAGGACGACAG 530
Query 123095 CATCACCGGTATCTATGAAACTTTGCGCGATTGCGCGTTGATTTCCAAATTTGGCGGCGG 123154
|||| || ||||| || || || | || || | || ||||| | | || ||
Sbjct 531 CATCGAGGGCATCTACGACACGCTGAAGCAGTGTGCACTCATCTCCAAGTCGGCAGGAGG 590
Query 123155 CATAGGCGTGAACGTGCACGACGTAAGAGGCCGCGGAAGCCGCATCAGAAGCACCGACGG 123214
|| || ||| ||| | | | || | ||| ||| |||| ||||| ||||
Sbjct 591 AATCGGTGTGGCCGTCAGCTGCATCCGATCCACCGGGAGCTACATCGCCGGCACCAACGG 650
Query 123215 AATCGCCTCCGGGCTCGAATCCATGCTGCGAGTTTACAATAACGCCGTGCGGCACGTCGA 123274
| | || |||||| | |||||||| | || ||||| ||| | | || | |||||
Sbjct 651 CAACTCCAACGGGCTGGTCCCCATGCTGAGGGTCTACAACAACACAGCACGCTATGTCGA 710
Query 123275 CCAGGGCGGCAA-ACGCAAA--GGCGCGATGGCGATCTATCTAGAACCGTGGCACGTTGA 123331
|||||||||||| | || | ||||| | || || || || || ||||||||| ||||
Sbjct 711 CCAGGGCGGCAACAAGCGACCCGGCGCCTTCGCCATGTACCTGGAGCCGTGGCACTTTGA 770
Query 123332 TGTGTACGATTTTTTAAATTTAAAACGCAACATGGGGGCGGAAGAAAAGAAAGCCCGCGA 123391
|||| ||| || | | | || |||| |||| ||| || ||| |||| | ||
Sbjct 771 CGTGTTCGACTTCCTGGAGCTGAAGAAGAACACGGGGAAGGAGGAGCAGAGAGCCAGAGA 830
Query 123392 TTTGTTGTACGCTTTATGGGTACCCGATTTGTTTATGCGACGCGTAAAAGACGACGGCGT 123451
| | || |||| || ||| | ||||| |||| ||| | || | | || |
Sbjct 831 TCTCTTCTACGGCTTGTGGATCCCCGACCTGTTCATGAAGAGGGTGGAGAGCAACCAGGA 890
Query 123452 GTGGTCGCTCATGTGTCCCGATCG-GTGTCCCGGCTTGAGCGACGTTTACGGCAATCAGT 123510
||||| || ||||||||| | || | | ||||| || ||| | || | |||
Sbjct 891 CTGGTCTCTGATGTGTCCC-AGCGAGAGCCCCGGGCTGGACGAGTGCTGGGGGGAGGAGT 949
Query 123511 TTGACGAGTTGTACGCGCAATACGAGCGCGAAGGCAAACAGGTTA---GTCAGGTTCCGG 123567
|||| || | ||| | ||||| ||||| || ||| | ||| | || ||| ||
Sbjct 950 TTGAGAAGCTCTACACCCAATATGAGCGGGAGGGC---CGGGTCAAGCGTGTGGTGAAGG 1006
Query 123568 CACGTGATTTGTTCAAATTTATTATCGAAACACAAGTCGAAACCGGAACGCCGTACATGC 123627
| | | ||| | || ||||| | || || | || |||||||||||||
Sbjct 1007 CTCAGCAGGTGTGGCACGCCATCATCGAGTCCCAGACGGAGTCGGGCACGCCGTACATGC 1066
Query 123628 TCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGCAACTTGGGAACAATAAAATGTA 123687
| ||||||||||||||||||||||| | ||| ||| ||| ||||||| || || || |
Sbjct 1067 TGTACAAAGACGCCTGCAACAGGAAGAGCAACCAGCAGAACCTGGGAACCATCAAGTGCA 1126
Query 123688 GTAATCTTTGCTCCGAAATTATCGAATACAGCGATGCCGATCAAGTGGCCGTGTGTAATT 123747
| || || ||| | ||||| | |||||| | || |||| | || || |||||||||
Sbjct 1127 GCAACCTCTGCACGGAAATCGTTGAATACTCCAGTGGCGATGAGGTCGCTGTGTGTAATC 1186
Query 123748 TGGCTTCGATTTGCGTGAATCGTTGCGTCGAAAACG-GCG--CTTTTAATTTCCAAACGC 123804
|||| || || | || | |||| || ||| ||||| | ||| | | |
Sbjct 1187 TGGCCTCCATCGCTCTCAACATGTACGTCACCCCCGAGCGGACTTTTGACTTCAAGAAAC 1246
Query 123805 TCAAACGCATAACAAAAACTGTAGTAAAGAATTTGAACAAAATTATCGATGTTAATTTTT 123864
| | | || ||| | || ||||| ||||||| || || || |||| || |
Sbjct 1247 TGGAGTCTGTGACCAAAGTGATCGTGAAGAACCTGAACAAGATCATAGAGATTAACTTCT 1306
Query 123865 ATCCTTTGGAGGAAGCGCGTTTGTCTAATTTGAAACACAGACCGGTCGGAGTGGGCATTC 123924
| || || || || | ||| || | ||||| ||| |||| | ||| | |
Sbjct 1307 ACCCGGTGCCCGAGGCCGATCAGTCCAACAAGCGCCACAGGCCGATCGGTATCGGCGTCC 1366
Query 123925 AAGGGTTGGCCGACGCGTTTGTAATGCTGCGCATGCCGTACGAAAGCGACGAAGCAAAGT 123984
| || |||||||||| || | || |||| || | |||||| ||| || ||
Sbjct 1367 AGGGCCTGGCCGACGCCTTCATCCTGATGCGTTACCCCTTTGAAAGCCCCGAGGCCCAGC 1426
Query 123985 TGCTTAATACGCAAATAGCCGAAACAATTTATTACGGCGCTTTGGAGGCGAGCTGCGAAC 124044
|||| || | || || || || || || |||| ||| ||||||| ||||||||||
Sbjct 1427 TGCTGAACATCCAGATCTTTGAGACCATCTACTACGCCGCCCTGGAGGCCAGCTGCGAAC 1486
Query 124045 TTGCGAAAATTCACGGCGCGTACGAAAGTTACGCGGGCAGCCCGGCGAGCCGAGGTATTT 124104
| || | ||| | ||||| | |||| ||| ||| | ||| || ||
Sbjct 1487 TGGCCGCCGAGCTGGGCCCCTACGACACGTACG-AGGCTCCCCCGTCAGCAAGGGCATCC 1545
Query 124105 TGCAGTACGACATGTGGAATGCTACACCGACAAATTTGTGGGACTGGAGCGTTTTAAAAC 124164
| ||||||||||||||| | || || || | |||||||||||| | | ||
Sbjct 1546 TCCAGTACGACATGTGGGAGAAGACGCCCACCGACCTGTGGGACTGGAAGCTGCTGAAGG 1605
Query 124165 AACGCATATCG--ACGCACGGTTTGCGTAACTCGCTGTTGGTGGCGTACATGCCGACGGC 124222
| | | |||| | |||||| || | ||| ||| || |||| ||||| |||||
Sbjct 1606 A--GAAGATCGCCAAGCACGGCGTGAGGAACAGCCTGCTGCTGGCCCCGATGCCCACGGC 1663
Query 124223 AACCACTGCTCAAATTTTAGGAAACAACGAATCCTTCGAGCCGTTCACTAACAA 124276
|||| || || || | || |||||||| ||| ||||| | | ||| | |||
Sbjct 1664 CTCCACCGCCCAGATCCTGGGCAACAACGAGTCCATCGAGGCCTACACCAGCAA 1717
>seq103378
Length=1867
Score = 91.5 bits (100), Expect = 1e-13
Identities = 98/130 (75%), Gaps = 0/130 (0%)
Strand=Plus/Plus
Query 123588 ATTATCGAAACACAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAAC 123647
|| ||||| |||| ||||| || |||||||||||||||||||| ||||||||||||
Sbjct 1655 ATCATCGAGTCACAGACTGAAACGGGTACGCCGTACATGCTCTACAAGGACGCCTGCAAC 1714
Query 123648 AGGAAAACCAATCAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATT 123707
|||| | ||| ||| || ||||||| || |||| || ||||| ||| | || ||
Sbjct 1715 GGGAAGAGCAACCAGCAGAATCTGGGAACCATCAAATCCAGCAATCTGTGCACAGAGATA 1774
Query 123708 ATCGAATACA 123717
| || ||||
Sbjct 1775 GTGGAGTACA 1784
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 449034092679920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |