Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq44246 197 1e-45 seq103378 91.5 1e-13 >seq44246 Length=4029 Score = 197 bits (218), Expect = 1e-45 Identities = 877/1374 (64%), Gaps = 21/1374 (2%) Strand=Plus/Plus Query 122916 CAACATATGCTCATGCGCGTCGCTATAGGCGTGCACG-GACGCGACATCGAAAACGCGAC 122974 || || ||||||||| | || | | || | ||| |||| || ||||| ||| | Sbjct 352 CAGCACATGCTCATGAGGGTGTCGGTCGGAATCCACAAGACG-GATATCGACGCCGCCAT 410 Query 122975 CGAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACGCGAGTCCCACTTTGTTCGC 123034 ||| || ||| | || | || | || | ||||| ||||| ||||| | ||| Sbjct 411 CGAGACCTACAACCTGCTCTCGGAGAAGTGGTTCACCCACGCCTCCCCCACGCTCTTCAA 470 Query 123035 CGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTTTTGCTCACCTTGCGCGAAGACAG 123094 ||| || || || ||||||| | || || || |||||||| || || ||||| Sbjct 471 CGCAGGAACCAACCGGCCTCAGCTCTCCAGCTGCTTCCTGCTCACCATGAAGGACGACAG 530 Query 123095 CATCACCGGTATCTATGAAACTTTGCGCGATTGCGCGTTGATTTCCAAATTTGGCGGCGG 123154 |||| || ||||| || || || | || || | || ||||| | | || || Sbjct 531 CATCGAGGGCATCTACGACACGCTGAAGCAGTGTGCACTCATCTCCAAGTCGGCAGGAGG 590 Query 123155 CATAGGCGTGAACGTGCACGACGTAAGAGGCCGCGGAAGCCGCATCAGAAGCACCGACGG 123214 || || ||| ||| | | | || | ||| ||| |||| ||||| |||| Sbjct 591 AATCGGTGTGGCCGTCAGCTGCATCCGATCCACCGGGAGCTACATCGCCGGCACCAACGG 650 Query 123215 AATCGCCTCCGGGCTCGAATCCATGCTGCGAGTTTACAATAACGCCGTGCGGCACGTCGA 123274 | | || |||||| | |||||||| | || ||||| ||| | | || | ||||| Sbjct 651 CAACTCCAACGGGCTGGTCCCCATGCTGAGGGTCTACAACAACACAGCACGCTATGTCGA 710 Query 123275 CCAGGGCGGCAA-ACGCAAA--GGCGCGATGGCGATCTATCTAGAACCGTGGCACGTTGA 123331 |||||||||||| | || | ||||| | || || || || || ||||||||| |||| Sbjct 711 CCAGGGCGGCAACAAGCGACCCGGCGCCTTCGCCATGTACCTGGAGCCGTGGCACTTTGA 770 Query 123332 TGTGTACGATTTTTTAAATTTAAAACGCAACATGGGGGCGGAAGAAAAGAAAGCCCGCGA 123391 |||| ||| || | | | || |||| |||| ||| || ||| |||| | || Sbjct 771 CGTGTTCGACTTCCTGGAGCTGAAGAAGAACACGGGGAAGGAGGAGCAGAGAGCCAGAGA 830 Query 123392 TTTGTTGTACGCTTTATGGGTACCCGATTTGTTTATGCGACGCGTAAAAGACGACGGCGT 123451 | | || |||| || ||| | ||||| |||| ||| | || | | || | Sbjct 831 TCTCTTCTACGGCTTGTGGATCCCCGACCTGTTCATGAAGAGGGTGGAGAGCAACCAGGA 890 Query 123452 GTGGTCGCTCATGTGTCCCGATCG-GTGTCCCGGCTTGAGCGACGTTTACGGCAATCAGT 123510 ||||| || ||||||||| | || | | ||||| || ||| | || | ||| Sbjct 891 CTGGTCTCTGATGTGTCCC-AGCGAGAGCCCCGGGCTGGACGAGTGCTGGGGGGAGGAGT 949 Query 123511 TTGACGAGTTGTACGCGCAATACGAGCGCGAAGGCAAACAGGTTA---GTCAGGTTCCGG 123567 |||| || | ||| | ||||| ||||| || ||| | ||| | || ||| || Sbjct 950 TTGAGAAGCTCTACACCCAATATGAGCGGGAGGGC---CGGGTCAAGCGTGTGGTGAAGG 1006 Query 123568 CACGTGATTTGTTCAAATTTATTATCGAAACACAAGTCGAAACCGGAACGCCGTACATGC 123627 | | | ||| | || ||||| | || || | || ||||||||||||| Sbjct 1007 CTCAGCAGGTGTGGCACGCCATCATCGAGTCCCAGACGGAGTCGGGCACGCCGTACATGC 1066 Query 123628 TCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGCAACTTGGGAACAATAAAATGTA 123687 | ||||||||||||||||||||||| | ||| ||| ||| ||||||| || || || | Sbjct 1067 TGTACAAAGACGCCTGCAACAGGAAGAGCAACCAGCAGAACCTGGGAACCATCAAGTGCA 1126 Query 123688 GTAATCTTTGCTCCGAAATTATCGAATACAGCGATGCCGATCAAGTGGCCGTGTGTAATT 123747 | || || ||| | ||||| | |||||| | || |||| | || || ||||||||| Sbjct 1127 GCAACCTCTGCACGGAAATCGTTGAATACTCCAGTGGCGATGAGGTCGCTGTGTGTAATC 1186 Query 123748 TGGCTTCGATTTGCGTGAATCGTTGCGTCGAAAACG-GCG--CTTTTAATTTCCAAACGC 123804 |||| || || | || | |||| || ||| ||||| | ||| | | | Sbjct 1187 TGGCCTCCATCGCTCTCAACATGTACGTCACCCCCGAGCGGACTTTTGACTTCAAGAAAC 1246 Query 123805 TCAAACGCATAACAAAAACTGTAGTAAAGAATTTGAACAAAATTATCGATGTTAATTTTT 123864 | | | || ||| | || ||||| ||||||| || || || |||| || | Sbjct 1247 TGGAGTCTGTGACCAAAGTGATCGTGAAGAACCTGAACAAGATCATAGAGATTAACTTCT 1306 Query 123865 ATCCTTTGGAGGAAGCGCGTTTGTCTAATTTGAAACACAGACCGGTCGGAGTGGGCATTC 123924 | || || || || | ||| || | ||||| ||| |||| | ||| | | Sbjct 1307 ACCCGGTGCCCGAGGCCGATCAGTCCAACAAGCGCCACAGGCCGATCGGTATCGGCGTCC 1366 Query 123925 AAGGGTTGGCCGACGCGTTTGTAATGCTGCGCATGCCGTACGAAAGCGACGAAGCAAAGT 123984 | || |||||||||| || | || |||| || | |||||| ||| || || Sbjct 1367 AGGGCCTGGCCGACGCCTTCATCCTGATGCGTTACCCCTTTGAAAGCCCCGAGGCCCAGC 1426 Query 123985 TGCTTAATACGCAAATAGCCGAAACAATTTATTACGGCGCTTTGGAGGCGAGCTGCGAAC 124044 |||| || | || || || || || || |||| ||| ||||||| |||||||||| Sbjct 1427 TGCTGAACATCCAGATCTTTGAGACCATCTACTACGCCGCCCTGGAGGCCAGCTGCGAAC 1486 Query 124045 TTGCGAAAATTCACGGCGCGTACGAAAGTTACGCGGGCAGCCCGGCGAGCCGAGGTATTT 124104 | || | ||| | ||||| | |||| ||| ||| | ||| || || Sbjct 1487 TGGCCGCCGAGCTGGGCCCCTACGACACGTACG-AGGCTCCCCCGTCAGCAAGGGCATCC 1545 Query 124105 TGCAGTACGACATGTGGAATGCTACACCGACAAATTTGTGGGACTGGAGCGTTTTAAAAC 124164 | ||||||||||||||| | || || || | |||||||||||| | | || Sbjct 1546 TCCAGTACGACATGTGGGAGAAGACGCCCACCGACCTGTGGGACTGGAAGCTGCTGAAGG 1605 Query 124165 AACGCATATCG--ACGCACGGTTTGCGTAACTCGCTGTTGGTGGCGTACATGCCGACGGC 124222 | | | |||| | |||||| || | ||| ||| || |||| ||||| ||||| Sbjct 1606 A--GAAGATCGCCAAGCACGGCGTGAGGAACAGCCTGCTGCTGGCCCCGATGCCCACGGC 1663 Query 124223 AACCACTGCTCAAATTTTAGGAAACAACGAATCCTTCGAGCCGTTCACTAACAA 124276 |||| || || || | || |||||||| ||| ||||| | | ||| | ||| Sbjct 1664 CTCCACCGCCCAGATCCTGGGCAACAACGAGTCCATCGAGGCCTACACCAGCAA 1717 >seq103378 Length=1867 Score = 91.5 bits (100), Expect = 1e-13 Identities = 98/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 123588 ATTATCGAAACACAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAAC 123647 || ||||| |||| ||||| || |||||||||||||||||||| |||||||||||| Sbjct 1655 ATCATCGAGTCACAGACTGAAACGGGTACGCCGTACATGCTCTACAAGGACGCCTGCAAC 1714 Query 123648 AGGAAAACCAATCAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATT 123707 |||| | ||| ||| || ||||||| || |||| || ||||| ||| | || || Sbjct 1715 GGGAAGAGCAACCAGCAGAATCTGGGAACCATCAAATCCAGCAATCTGTGCACAGAGATA 1774 Query 123708 ATCGAATACA 123717 | || |||| Sbjct 1775 GTGGAGTACA 1784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449034092679920