Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq300823 118 2e-21 seq120923 118 2e-21 >seq300823 Length=615 Score = 118 bits (130), Expect = 2e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 8933 GTTGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTAC 8992 || || || || |||||||| || || ||||| ||||||||||| || ||||||||| Sbjct 252 GTGGCCGTGTTGACGATGTCGAAGCCCTTTTCCCCCCCGAAGGTGCTCGGCTTCCAGTAC 193 Query 8993 GCCGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCG 9052 | |||||||||||| ||| ||| || ||||||||||| || |||||||||| ||| Sbjct 192 ACAGGGGAGCAGATGGGGTTTCCCAGCAGGCCTTTCAAGGAGAAGGGAGCCCCCATCTCC 133 Query 9053 ATGATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAG 9112 | |||||||| || || || | ||||| | ||| || | | || || ||| Sbjct 132 ACCATGCTCTCCCCAAATATACTGTCAGGACGAGCTTTCTCCAGCAGGACTCCGACGTAA 73 Query 9113 AGTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAA 9150 | || | ||| |||| ||| || ||||| | ||||| Sbjct 72 AACTCCAGAGCATCGATGTCCCCGTAGAGCTCCTCCAA 35 >seq120923 Length=5298 Score = 118 bits (130), Expect = 2e-21 Identities = 206/299 (69%), Gaps = 3/299 (1%) Strand=Plus/Minus Query 8880 GGAACGCGGCCAACGGACAT---CCCTTCACATTGGCACAAATGAGGGACTGAATGGTTG 8936 |||| | ||||| ||||| |||| ||| ||| || | ||| ||| | | | Sbjct 4209 GGAAGGAGGCCACGGGACAGGGGCCCTGCACGTTGTTGCACACGAGCCTCTGCAGTGAGG 4150 Query 8937 CGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCG 8996 | || || | |||||| || || ||| || |||||||||||||| ||||||||| ||| Sbjct 4149 CCGTGTTGATGATGTCGAATCCCACGCTTCCTCCGAAGGTGCTGGGCTTCCAGTACTCCG 4090 Query 8997 GGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGA 9056 | ||||||||| |||| ||| | || || | ||| | || ||||||| ||| | | Sbjct 4089 GTGAGCAGATGGCGTTTCCCAACAAACCCTTGAGGGAGTAAGGGGCCCCCATCTCCACCA 4030 Query 9057 TGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTT 9116 || |||| ||||||||||| || | || || || | || | ||| | |||||| | Sbjct 4029 TGGTCTCGCCGAAGATGGCGTTAGGCCTGGGCTTCTCTATGAGCAGGCCCGGGTAGAGCT 3970 Query 9117 CGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 | || || || |||| || || | |||||| | | ||||| || || |||| ||| Sbjct 3969 CCACGGCGTCCACGTGTCCGTACATCTCTTCCAGCACCGCAGCCATTTCGGTCTCTCCT 3911 Score = 87.8 bits (96), Expect = 3e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 9726 GATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAG 9785 ||| || || ||||| || |||| |||||| |||| || || || | | || || Sbjct 2063 GATGAGCCGTGTGGTCTGGAACAGTCTCTCGTCGTCCCAGTCGGGATGCACCTCCTTCAG 2004 Query 9786 AACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGG 9845 || ||||| |||| |||||| || | |||||| ||||||||||||||||| | |||||| Sbjct 2003 CACGTCGCACACCCGGTTGTGCTCCCGCAGCCAGATGGTGGCGTACATCATCAGACCCGG 1944 Query 9846 CACTAAACCAAACACTTCATTCCCCACTGCAAAGCG 9881 || | || || | || | ||||| || ||||| Sbjct 1943 GACCAGGCCGAAAGCCTCGTGGCCCACGGCGAAGCG 1908 Score = 84.2 bits (92), Expect = 3e-11 Identities = 103/139 (74%), Gaps = 4/139 (3%) Strand=Plus/Minus Query 9553 TCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGG 9612 || |||| ||| | |||||| |||| ||||| |||||||||| | || ||||||||| Sbjct 2947 TCGGGCATCAGCGGGTGCCAGTGGTACAGGGTGTTGAACTCGGAGGAGATGCGGTTCTGG 2888 Query 9613 TACTGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACC 9670 ||||| || | ||| ||| || | ||| ||||| || | |||| ||||| ||| | Sbjct 2887 TACTGGAACTGCTGGT--TGAAGAGCAGCTCGGGGTCGAACTTGAGCTTGAAGTTGTAGC 2830 Query 9671 CGCTGAGTTGCTGGACATA 9689 |||| || ||||| || || Sbjct 2829 CGCTCAGATGCTGCACGTA 2811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718973993606800