Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_012783.2
Length=226205
Score E
Sequences producing significant alignments: (Bits) Value
seq300823 118 2e-21
seq120923 118 2e-21
>seq300823
Length=615
Score = 118 bits (130), Expect = 2e-21
Identities = 157/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 8933 GTTGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTAC 8992
|| || || || |||||||| || || ||||| ||||||||||| || |||||||||
Sbjct 252 GTGGCCGTGTTGACGATGTCGAAGCCCTTTTCCCCCCCGAAGGTGCTCGGCTTCCAGTAC 193
Query 8993 GCCGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCG 9052
| |||||||||||| ||| ||| || ||||||||||| || |||||||||| |||
Sbjct 192 ACAGGGGAGCAGATGGGGTTTCCCAGCAGGCCTTTCAAGGAGAAGGGAGCCCCCATCTCC 133
Query 9053 ATGATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAG 9112
| |||||||| || || || | ||||| | ||| || | | || || |||
Sbjct 132 ACCATGCTCTCCCCAAATATACTGTCAGGACGAGCTTTCTCCAGCAGGACTCCGACGTAA 73
Query 9113 AGTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAA 9150
| || | ||| |||| ||| || ||||| | |||||
Sbjct 72 AACTCCAGAGCATCGATGTCCCCGTAGAGCTCCTCCAA 35
>seq120923
Length=5298
Score = 118 bits (130), Expect = 2e-21
Identities = 206/299 (69%), Gaps = 3/299 (1%)
Strand=Plus/Minus
Query 8880 GGAACGCGGCCAACGGACAT---CCCTTCACATTGGCACAAATGAGGGACTGAATGGTTG 8936
|||| | ||||| ||||| |||| ||| ||| || | ||| ||| | | |
Sbjct 4209 GGAAGGAGGCCACGGGACAGGGGCCCTGCACGTTGTTGCACACGAGCCTCTGCAGTGAGG 4150
Query 8937 CGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCG 8996
| || || | |||||| || || ||| || |||||||||||||| ||||||||| |||
Sbjct 4149 CCGTGTTGATGATGTCGAATCCCACGCTTCCTCCGAAGGTGCTGGGCTTCCAGTACTCCG 4090
Query 8997 GGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGA 9056
| ||||||||| |||| ||| | || || | ||| | || ||||||| ||| | |
Sbjct 4089 GTGAGCAGATGGCGTTTCCCAACAAACCCTTGAGGGAGTAAGGGGCCCCCATCTCCACCA 4030
Query 9057 TGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTT 9116
|| |||| ||||||||||| || | || || || | || | ||| | |||||| |
Sbjct 4029 TGGTCTCGCCGAAGATGGCGTTAGGCCTGGGCTTCTCTATGAGCAGGCCCGGGTAGAGCT 3970
Query 9117 CGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175
| || || || |||| || || | |||||| | | ||||| || || |||| |||
Sbjct 3969 CCACGGCGTCCACGTGTCCGTACATCTCTTCCAGCACCGCAGCCATTTCGGTCTCTCCT 3911
Score = 87.8 bits (96), Expect = 3e-12
Identities = 113/156 (72%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 9726 GATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAG 9785
||| || || ||||| || |||| |||||| |||| || || || | | || ||
Sbjct 2063 GATGAGCCGTGTGGTCTGGAACAGTCTCTCGTCGTCCCAGTCGGGATGCACCTCCTTCAG 2004
Query 9786 AACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGG 9845
|| ||||| |||| |||||| || | |||||| ||||||||||||||||| | ||||||
Sbjct 2003 CACGTCGCACACCCGGTTGTGCTCCCGCAGCCAGATGGTGGCGTACATCATCAGACCCGG 1944
Query 9846 CACTAAACCAAACACTTCATTCCCCACTGCAAAGCG 9881
|| | || || | || | ||||| || |||||
Sbjct 1943 GACCAGGCCGAAAGCCTCGTGGCCCACGGCGAAGCG 1908
Score = 84.2 bits (92), Expect = 3e-11
Identities = 103/139 (74%), Gaps = 4/139 (3%)
Strand=Plus/Minus
Query 9553 TCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGG 9612
|| |||| ||| | |||||| |||| ||||| |||||||||| | || |||||||||
Sbjct 2947 TCGGGCATCAGCGGGTGCCAGTGGTACAGGGTGTTGAACTCGGAGGAGATGCGGTTCTGG 2888
Query 9613 TACTGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACC 9670
||||| || | ||| ||| || | ||| ||||| || | |||| ||||| ||| |
Sbjct 2887 TACTGGAACTGCTGGT--TGAAGAGCAGCTCGGGGTCGAACTTGAGCTTGAAGTTGTAGC 2830
Query 9671 CGCTGAGTTGCTGGACATA 9689
|||| || ||||| || ||
Sbjct 2829 CGCTCAGATGCTGCACGTA 2811
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718973993606800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |