Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq44246 212 8e-50 seq54337 98.7 1e-15 seq504380 95.1 1e-14 seq231358 93.3 5e-14 seq496362 86.0 8e-12 >seq44246 Length=4029 Score = 212 bits (234), Expect = 8e-50 Identities = 847/1308 (65%), Gaps = 49/1308 (4%) Strand=Plus/Minus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 ||||||||| | ||||| | ||| | | |||| ||||| |||| ||| ||||| |||||| Sbjct 1723 TAGATGTTGCTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAG 1664 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCC 116022 || |||||||| || |||| || |||||||| | | || | || ||| Sbjct 1663 GCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGCTTGGCGATCTTCTCC 1604 Query 116023 TTGAGGGCGTCCCAGTC------GTAGTTGAGCTTTGTCTCCCCCTCCCACATATCAAAC 116076 || || | |||||| || | || || |||| | |||||||| || || Sbjct 1603 TTCAGCAGCTTCCAGTCCCACAGGTCGGTGGGC---GTCTTC---TCCCACATGTCGTAC 1550 Query 116077 TGGAGGATACCTTGG--GACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCT 116134 |||||||| || | | |||| || | |||| | || || || |||||| | Sbjct 1549 TGGAGGATGCCCTTGCTGACGGGGGAG---CCTCGTACGTGTCGTAGGGGCCCAGCTCGG 1493 Query 116135 CCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCAT 116194 | |||| |||| |||| ||||| ||||| |||| || || |||||||| || | | Sbjct 1492 CGGCCAGTTCGCAGCTGGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATCTGGATGT 1433 Query 116195 TCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGA 116254 ||| || ||||||| | ||||| | | ||| || || || | || || | Sbjct 1432 TCAGCAGCTGGGCCTCGGGGCTTTCAAAGGGGTAACGCATCAGGATGAAGGCGTCGGCCA 1373 Query 116255 GACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTC-- 116312 | || ||||| |||| || || || | || | | | || |||| || ||| ||| Sbjct 1372 GGCCCTGGACGCCGATACCGATCGGCCTGTGGCGCTTGTTGGACT---GATCGGCCTCGG 1316 Query 116313 -CACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGA 116371 ||| || || || || | || || | | | || || || || || || || || | Sbjct 1315 GCACCGGGTAGAAGTTAATCTCTATGATCTTGTTCAGGTTCTTCACGATCACTTTGGTCA 1256 Query 116372 TTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGG 116431 | || || | | | |||||| | || ||| |||| ||| | || | Sbjct 1255 CAGACTCCAGTTTCTTGAAGTCAAAAGTCCG---CTCGGGGGTGACGTACATGTTGAGAG 1199 Query 116432 CGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCG 116491 |||| || |||||||||||||||| | |||||| | | ||| || | ||||||| Sbjct 1198 CGATGGAGGCCAGATTACACACAGCGACCTCATCGCCACTGGAGTATTCAACGATTTCCG 1139 Query 116492 TACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACG 116551 | || | || | ||| ||||| |||| ||||| || || ||| |||| || | Sbjct 1138 TGCAGAGGTTGCTGCACTTGATGGTTCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGG 1079 Query 116552 CATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCC 116611 | || ||||| ||||| || ||||| |||| |||||| ||||||| || || || | || Sbjct 1078 CGTCTTTGTACAGCATGTACGGCGTGCCCGACTCCGTCTGGGACTCGATGATGGCGTGCC 1019 Query 116612 ATACAT-CGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAG 116670 | || | | | | || || || ||| | || |||||| ||| || | |||||| Sbjct 1018 ACACCTGCTGAGCCTTCACCACACGC-TTGACCCGGCCCTCCCGCTCATATTGGGTGTAG 960 Query 116671 AGGGCCTCAAACTCTTCACCCACAGC-CTCTGAGAGCCCTGGTGCCTTATCT-GGACAGA 116728 || ||||||||| || ||| |||| ||| ||||| || || | || ||||| | Sbjct 959 AGCTTCTCAAACTCCTC-CCCCCAGCACTCGTCCAGCCC-GGGGCTCTCGCTGGGACACA 902 Query 116729 AGAGAGACCATTGACCACCCT--CCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAG 116786 |||||||| | || | ||| |||| ||||||||| ||||| |||||||| | Sbjct 901 TCAGAGACCA--GTCCTGGTTGCTCTCCACCCTCTTCATGAACAGGTCGGGGATCCACA- 845 Query 116787 CGCCG-AGAAGAGATC-CCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCC 116844 |||| |||||||||| | | | ||| || | ||||| || || || |||| Sbjct 844 AGCCGTAGAAGAGATCTCTGGCTCTCTGCTCCTCCTTCCCCGTG-TTCTTCTTCAGCTCC 786 Query 116845 AAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC--CTTGC 116902 | ||||| | | || ||||||||| |||||||||| |||| | || | || Sbjct 785 AGGAAGTCGAACACGTCAAAGTGCCACGGCTCCAGGTACATGGCGAAGGCGCCGGGTCGC 726 Query 116903 --GACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAAT 116960 | | || |||||| ||||| | || || ||| | || | ||||| || | Sbjct 725 TTGTTG-CCGCCCTGGTCGACATAGCGTGCTGTGTTGTTGTAGACCCTCAGCATGGGGAC 667 Query 116961 GATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTGTTGGCTCTGACATCGTG 117020 | || | || | ||| || || || || | | ||| || || | Sbjct 666 CAGCCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTCCCGGTGGATCGGATGCAGCT 607 Query 117021 GATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCC 117080 || | || ||| || || |||||| |||| ||||| |||| |||| | | || || | Sbjct 606 GACGGCCACACCGATTCCTCCTGCCGACTTGGAGATGAGTGCACACTGCTTCAGCGTGTC 547 Query 117081 GTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGG 117140 |||||| || ||||| ||| |||| | | || ||||||||||| || | || || Sbjct 546 GTAGATGCCCTCGATGCTGTCGTCCTTCATGGTGAGCAGGAAGCAGCTGGAGAGCTGAGG 487 Query 117141 CC--TTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAAC 117186 || ||| || || ||||||||||| || || | |||||| ||||| Sbjct 486 CCGGTTG--GTTCCTGCGTTGAAGAGCGTGGGGGAGGCGTGGGTGAAC 441 >seq54337 Length=1748 Score = 98.7 bits (108), Expect = 1e-15 Identities = 77/92 (84%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 ||||||||| | ||||| ||||||| | |||||||||| |||| ||| ||||| ||||| Sbjct 1338 TAGATGTTGCTGGTGTACGGCTCAATGGACTCATTGTTGCCCAGGATCTGGGCAGTGGAA 1279 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 115994 |||||||||||||| |||| || || ||||| Sbjct 1278 GCTGTGGGCATGGGGGCCAACAGCAGACTGTT 1247 >seq504380 Length=601 Score = 95.1 bits (104), Expect = 1e-14 Identities = 219/325 (67%), Gaps = 14/325 (4%) Strand=Plus/Plus Query 12789 TCGAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGC- 12847 || || |||||||| || ||| | ||| || | || || ||||| |||||||| | Sbjct 14 TCAAAACCATCCATTTCGACCAATAATTGGTTCAGTGTCTGCTCACGCTCATCATTACCA 73 Query 12848 --GGGCATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACG 12905 | ||||||| ||| | || |||||| || |||||||| ||||| || | | Sbjct 74 CCGCCCATACCAGAGCCAC---GATGACGACCGACCGCATCAATTTCATCAATAAAGATG 130 Query 12906 ATACACGGTTGA---TTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCG 12962 ||||| || |||| | || ||| || ||||| || || | ||||||| Sbjct 131 ATACAAGGCGCGCTCTTTTTA---GCCTGTTCGAACATATCGCGTACACGTGAGGCACCG 187 Query 12963 ACACCCACAAACATCTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTGGA 13021 ||||| ||||||||||| ||||||| | | | | |||| || ||| || || || | Sbjct 188 ACACCGACAAACATCTCAACAAAATCAGAACCTG-AGATTGAGAAGAACGGCACTTTAGC 246 Query 13022 TTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGTTTCCCCGCGAGAAG 13081 |||||| || ||||||| ||| | | ||| || || || ||||| || | | | Sbjct 247 TTCACCAGCAATGGCTCTGGCTAACAAGGTTTTACCGGTACCTGGAGGACCTACCATTAA 306 Query 13082 GGCACCACGTGGGATCCTGGCACCA 13106 | ||||||||| ||| | |||||| Sbjct 307 GATACCACGTGGAATCGTCGCACCA 331 >seq231358 Length=2322 Score = 93.3 bits (102), Expect = 5e-14 Identities = 86/109 (79%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 127539 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 127598 ||||||| | | |||||| ||||| |||||| ||| || ||||| || || | ||||| Sbjct 628 CCTCGTCTCTGCTGATGAGCTCATTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 687 Query 127599 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 127647 ||| |||||| || ||| || || |||||||||||||| |||||||| Sbjct 688 TCAGCCAGAAGATGGCAGCGAAGGACCCAGAGAAGAAGATTCCCTCCAC 736 >seq496362 Length=882 Score = 86.0 bits (94), Expect = 8e-12 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 ||| | ||| |||||||| || || | ||| || ||||| || |||||||| | ||| Sbjct 619 GTGAACACCTTCGTCACGAGAAATCAATTCGTTTGAGAATGTCAATCCTGGCATCAAACC 560 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 || || |||||||||||||| | |||||| | || |||||||| || || ||||| Sbjct 559 TCGTTTTTTCAACCAGAAAATGGAACAAAAAGCACCTGAGAAGAAAATTCCTTCCACTGC 500 Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGGA 127680 || || |||| | ||||| || || || Sbjct 499 TGCAAAAGCAATCAATCGCTCTGCGAAAGA 470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 609477209242320