Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq44246 212 8e-50
seq54337 98.7 1e-15
seq504380 95.1 1e-14
seq231358 93.3 5e-14
seq496362 86.0 8e-12
>seq44246
Length=4029
Score = 212 bits (234), Expect = 8e-50
Identities = 847/1308 (65%), Gaps = 49/1308 (4%)
Strand=Plus/Minus
Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962
||||||||| | ||||| | ||| | | |||| ||||| |||| ||| ||||| ||||||
Sbjct 1723 TAGATGTTGCTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAG 1664
Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCC 116022
|| |||||||| || |||| || |||||||| | | || | || |||
Sbjct 1663 GCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGCTTGGCGATCTTCTCC 1604
Query 116023 TTGAGGGCGTCCCAGTC------GTAGTTGAGCTTTGTCTCCCCCTCCCACATATCAAAC 116076
|| || | |||||| || | || || |||| | |||||||| || ||
Sbjct 1603 TTCAGCAGCTTCCAGTCCCACAGGTCGGTGGGC---GTCTTC---TCCCACATGTCGTAC 1550
Query 116077 TGGAGGATACCTTGG--GACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCT 116134
|||||||| || | | |||| || | |||| | || || || |||||| |
Sbjct 1549 TGGAGGATGCCCTTGCTGACGGGGGAG---CCTCGTACGTGTCGTAGGGGCCCAGCTCGG 1493
Query 116135 CCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCAT 116194
| |||| |||| |||| ||||| ||||| |||| || || |||||||| || | |
Sbjct 1492 CGGCCAGTTCGCAGCTGGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATCTGGATGT 1433
Query 116195 TCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGA 116254
||| || ||||||| | ||||| | | ||| || || || | || || |
Sbjct 1432 TCAGCAGCTGGGCCTCGGGGCTTTCAAAGGGGTAACGCATCAGGATGAAGGCGTCGGCCA 1373
Query 116255 GACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTC-- 116312
| || ||||| |||| || || || | || | | | || |||| || ||| |||
Sbjct 1372 GGCCCTGGACGCCGATACCGATCGGCCTGTGGCGCTTGTTGGACT---GATCGGCCTCGG 1316
Query 116313 -CACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGA 116371
||| || || || || | || || | | | || || || || || || || || |
Sbjct 1315 GCACCGGGTAGAAGTTAATCTCTATGATCTTGTTCAGGTTCTTCACGATCACTTTGGTCA 1256
Query 116372 TTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGG 116431
| || || | | | |||||| | || ||| |||| ||| | || |
Sbjct 1255 CAGACTCCAGTTTCTTGAAGTCAAAAGTCCG---CTCGGGGGTGACGTACATGTTGAGAG 1199
Query 116432 CGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCG 116491
|||| || |||||||||||||||| | |||||| | | ||| || | |||||||
Sbjct 1198 CGATGGAGGCCAGATTACACACAGCGACCTCATCGCCACTGGAGTATTCAACGATTTCCG 1139
Query 116492 TACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACG 116551
| || | || | ||| ||||| |||| ||||| || || ||| |||| || |
Sbjct 1138 TGCAGAGGTTGCTGCACTTGATGGTTCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGG 1079
Query 116552 CATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCC 116611
| || ||||| ||||| || ||||| |||| |||||| ||||||| || || || | ||
Sbjct 1078 CGTCTTTGTACAGCATGTACGGCGTGCCCGACTCCGTCTGGGACTCGATGATGGCGTGCC 1019
Query 116612 ATACAT-CGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAG 116670
| || | | | | || || || ||| | || |||||| ||| || | ||||||
Sbjct 1018 ACACCTGCTGAGCCTTCACCACACGC-TTGACCCGGCCCTCCCGCTCATATTGGGTGTAG 960
Query 116671 AGGGCCTCAAACTCTTCACCCACAGC-CTCTGAGAGCCCTGGTGCCTTATCT-GGACAGA 116728
|| ||||||||| || ||| |||| ||| ||||| || || | || ||||| |
Sbjct 959 AGCTTCTCAAACTCCTC-CCCCCAGCACTCGTCCAGCCC-GGGGCTCTCGCTGGGACACA 902
Query 116729 AGAGAGACCATTGACCACCCT--CCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAG 116786
|||||||| | || | ||| |||| ||||||||| ||||| |||||||| |
Sbjct 901 TCAGAGACCA--GTCCTGGTTGCTCTCCACCCTCTTCATGAACAGGTCGGGGATCCACA- 845
Query 116787 CGCCG-AGAAGAGATC-CCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCC 116844
|||| |||||||||| | | | ||| || | ||||| || || || ||||
Sbjct 844 AGCCGTAGAAGAGATCTCTGGCTCTCTGCTCCTCCTTCCCCGTG-TTCTTCTTCAGCTCC 786
Query 116845 AAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC--CTTGC 116902
| ||||| | | || ||||||||| |||||||||| |||| | || | ||
Sbjct 785 AGGAAGTCGAACACGTCAAAGTGCCACGGCTCCAGGTACATGGCGAAGGCGCCGGGTCGC 726
Query 116903 --GACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAAT 116960
| | || |||||| ||||| | || || ||| | || | ||||| || |
Sbjct 725 TTGTTG-CCGCCCTGGTCGACATAGCGTGCTGTGTTGTTGTAGACCCTCAGCATGGGGAC 667
Query 116961 GATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTGTTGGCTCTGACATCGTG 117020
| || | || | ||| || || || || | | ||| || || |
Sbjct 666 CAGCCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTCCCGGTGGATCGGATGCAGCT 607
Query 117021 GATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCC 117080
|| | || ||| || || |||||| |||| ||||| |||| |||| | | || || |
Sbjct 606 GACGGCCACACCGATTCCTCCTGCCGACTTGGAGATGAGTGCACACTGCTTCAGCGTGTC 547
Query 117081 GTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGG 117140
|||||| || ||||| ||| |||| | | || ||||||||||| || | || ||
Sbjct 546 GTAGATGCCCTCGATGCTGTCGTCCTTCATGGTGAGCAGGAAGCAGCTGGAGAGCTGAGG 487
Query 117141 CC--TTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAAC 117186
|| ||| || || ||||||||||| || || | |||||| |||||
Sbjct 486 CCGGTTG--GTTCCTGCGTTGAAGAGCGTGGGGGAGGCGTGGGTGAAC 441
>seq54337
Length=1748
Score = 98.7 bits (108), Expect = 1e-15
Identities = 77/92 (84%), Gaps = 0/92 (0%)
Strand=Plus/Minus
Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962
||||||||| | ||||| ||||||| | |||||||||| |||| ||| ||||| |||||
Sbjct 1338 TAGATGTTGCTGGTGTACGGCTCAATGGACTCATTGTTGCCCAGGATCTGGGCAGTGGAA 1279
Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 115994
|||||||||||||| |||| || || |||||
Sbjct 1278 GCTGTGGGCATGGGGGCCAACAGCAGACTGTT 1247
>seq504380
Length=601
Score = 95.1 bits (104), Expect = 1e-14
Identities = 219/325 (67%), Gaps = 14/325 (4%)
Strand=Plus/Plus
Query 12789 TCGAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGC- 12847
|| || |||||||| || ||| | ||| || | || || ||||| |||||||| |
Sbjct 14 TCAAAACCATCCATTTCGACCAATAATTGGTTCAGTGTCTGCTCACGCTCATCATTACCA 73
Query 12848 --GGGCATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACG 12905
| ||||||| ||| | || |||||| || |||||||| ||||| || | |
Sbjct 74 CCGCCCATACCAGAGCCAC---GATGACGACCGACCGCATCAATTTCATCAATAAAGATG 130
Query 12906 ATACACGGTTGA---TTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCG 12962
||||| || |||| | || ||| || ||||| || || | |||||||
Sbjct 131 ATACAAGGCGCGCTCTTTTTA---GCCTGTTCGAACATATCGCGTACACGTGAGGCACCG 187
Query 12963 ACACCCACAAACATCTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTGGA 13021
||||| ||||||||||| ||||||| | | | | |||| || ||| || || || |
Sbjct 188 ACACCGACAAACATCTCAACAAAATCAGAACCTG-AGATTGAGAAGAACGGCACTTTAGC 246
Query 13022 TTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGTTTCCCCGCGAGAAG 13081
|||||| || ||||||| ||| | | ||| || || || ||||| || | | |
Sbjct 247 TTCACCAGCAATGGCTCTGGCTAACAAGGTTTTACCGGTACCTGGAGGACCTACCATTAA 306
Query 13082 GGCACCACGTGGGATCCTGGCACCA 13106
| ||||||||| ||| | ||||||
Sbjct 307 GATACCACGTGGAATCGTCGCACCA 331
>seq231358
Length=2322
Score = 93.3 bits (102), Expect = 5e-14
Identities = 86/109 (79%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 127539 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 127598
||||||| | | |||||| ||||| |||||| ||| || ||||| || || | |||||
Sbjct 628 CCTCGTCTCTGCTGATGAGCTCATTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 687
Query 127599 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 127647
||| |||||| || ||| || || |||||||||||||| ||||||||
Sbjct 688 TCAGCCAGAAGATGGCAGCGAAGGACCCAGAGAAGAAGATTCCCTCCAC 736
>seq496362
Length=882
Score = 86.0 bits (94), Expect = 8e-12
Identities = 109/150 (73%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590
||| | ||| |||||||| || || | ||| || ||||| || |||||||| | |||
Sbjct 619 GTGAACACCTTCGTCACGAGAAATCAATTCGTTTGAGAATGTCAATCCTGGCATCAAACC 560
Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650
|| || |||||||||||||| | |||||| | || |||||||| || || |||||
Sbjct 559 TCGTTTTTTCAACCAGAAAATGGAACAAAAAGCACCTGAGAAGAAAATTCCTTCCACTGC 500
Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGGA 127680
|| || |||| | ||||| || || ||
Sbjct 499 TGCAAAAGCAATCAATCGCTCTGCGAAAGA 470
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 609477209242320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |