Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_013668.3
Length=248526
Score E
Sequences producing significant alignments: (Bits) Value
seq44246 203 5e-47
seq54337 84.2 3e-11
>seq44246
Length=4029
Score = 203 bits (224), Expect = 5e-47
Identities = 584/886 (66%), Gaps = 18/886 (2%)
Strand=Plus/Minus
Query 204884 TCCACGATCTCGGTGCACAAGTTACCGCACTTCACCACCCCCACATGCTGCTGGTTAGAC 204943
|| ||||| || ||||| | ||| | |||||| | |||| | ||||||||| |
Sbjct 1151 TCAACGATTTCCGTGCAGAGGTTGCTGCACTTGATGGTTCCCAGGTTCTGCTGGTTGCTC 1092
Query 204944 TTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATTCCGTTCTCCATCTGAGA-TCG 205002
|| | ||| |||| ||| ||||||| |||| ||||| | || |||| |||| || |||
Sbjct 1091 TTCCTGTTGCAGGCGTCTTTGTACAGCATGTACGGCGTGCCCGACTCCGTCTGGGACTCG 1032
Query 205003 CAGAATGTGGGTCCACAATTCGCGAGCCT---CCACTTGCTTCACGTACATCCCTTGAGA 205059
|| | | | ||||| | |||||| |||| |||| || | |||| |
Sbjct 1031 ATGATGGCGTG-CCACACCTGCTGAGCCTTCACCACACGCTTGACC--CGGCCCTCCCG- 976
Query 205060 CTCGTATTTTGTGTACAGCGCCACAAAGTCAGAACC---GTACACGTCCATCAGCCCTGG 205116
||| |||| ||||| ||| | |||| || || | || |||||| |||| ||
Sbjct 975 CTCATATTGGGTGTAGAGCTTCTCAAACTCCTCCCCCCAGCACTCGTCCA---GCCCGGG 919
Query 205117 ACATTTTTTGGGACACATCAGAGACCACATCTGATCGTCTTTCACCCTCTCCATAAACAG 205176
| | ||||||||||||||||||| ||| | | | |||||||| ||| |||||
Sbjct 918 GCTCTCGCTGGGACACATCAGAGACCAGTCCTGGTTGCTCTCCACCCTCTTCATGAACAG 859
Query 205177 GTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGTT 205236
|||| |||||||| |||||| || ||||| | ||| || | || | || |||
Sbjct 858 GTCGGGGATCCACAAGCCGTAGAAGAGATCTCTGGCTCTCTGCTCCTCCTTCCCCGTGTT 799
Query 205237 CTTTTTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGGCTCTAACCACACGGCCA 205295
||| |||| ||||| ||| || | | ||| |||||||||||| | ||| ||| |
Sbjct 798 CTTCTTCAGCTCCAG-GAAGTCGAACACGTCAAAGTGCCACGGCTCCAGGTACATGGCGA 740
Query 205296 TTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACTC 205355
||||| || | |||||| || |||||||| || ||| | | |||| | || |
Sbjct 739 AGGCGCCGGGTCGCTTGTTGCCGCCCTGGTCGACATAGCGTGCTGTGTTGTTGTAGACCC 680
Query 205356 GCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGGCCGAGCCTTCAG 205415
|||||| || ||||| ||||||| | | ||||| |||| | |||| || |
Sbjct 679 TCAGCATGGGGACCAGCCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTCCCGGTGG 620
Query 205416 CCCTCACGTTGGAGATGGCCGCGCCAATCCCGCCAGAACACTTGGCGATCTGGGCGCACT 205475
| | | | || |||| | || || || || | |||||| ||| | || ||||
Sbjct 619 ATCGGATGCAGCTGACGGCCACACCGATTCCTCCTGCCGACTTGGAGATGAGTGCACACT 560
Query 205476 CTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGTCACCAGATAGCACG 205535
| ||| ||| ||||||||| ||||| |||||| || || | ||| ||||
Sbjct 559 GCTTCAGCGTGTCGTAGATGCCCTCGATGCTGTCGTCCTTCATGGTGAGCAGGAAGCAGC 500
Query 205536 AAGCCAGCTTGGCAAAGTTGGTGCCCGCGTGGAAGAGCGTGGGGCTGGCGTGGCTGAAGC 205595
| |||| | |||||| || |||| ||||||||||||| ||||||| |||| |
Sbjct 499 TGGAGAGCTGAGGCCGGTTGGTTCCTGCGTTGAAGAGCGTGGGGGAGGCGTGGGTGAACC 440
Query 205596 GCTTCTCGCTCAAACA-CCTGTAGGTCTCCAGCACGCTCTCCAGATCGAAGCCGTGAATA 205654
|||||| | | || |||||||||| | || || | ||| ||| ||
Sbjct 439 ACTTCTC-CGAGAGCAGGTTGTAGGTCTCGATGGCGGCGTCGATATCCGTCTTGTGGATT 381
Query 205655 CCTATGGCGATCCTCATGAAGAGGTGTTGAGGTCTCTCCATCACCCTCTCGTTCACCTTG 205714
|| | | | |||||||| | ||| || || | |||| ||| | |||| | |||
Sbjct 380 CCGACCGACACCCTCATGAGCATGTGCTGCGGCCGCTCCGCCACTTTGCCGTTGATCTTC 321
Query 205715 AGCAGATAGGCTCTCTCTAGGGTGCGGATGGCAAAAAAGTTGAAGG 205760
||||| |||| || ||| || || || | | || |||||| |||
Sbjct 320 AGCAGGTAGGATCGCTCCAGCGTCTTGAAGCCGAAGAAGTTGTAGG 275
Score = 185 bits (204), Expect = 1e-41
Identities = 353/513 (69%), Gaps = 8/513 (2%)
Strand=Plus/Minus
Query 204100 CCTGA-TCGAGCCGTTGTCGGCCATCAGTCTCATCCTCGTCTCCTCCCCCCACATGCCCA 204158
||||| | || ||||||| | ||||| || || ||||||| ||||||| ||||
Sbjct 1851 CCTGAATGGATCCGTTGTTACCGATCAGCTGGTTCTTCATCTCCTCGCCCCACA-GCCCT 1793
Query 204159 ACCTGA-TCAGCTCCCGCACCAGGTGGGGGTTGATGATCTGAAAGTCTCCGGACAGCACC 204217
|| |||| ||| | ||| |||||||||| |||||| || ||||| ||||| |||
Sbjct 1792 CTCTCCGTCAGGTCCTTGAGCAGATGGGGGTTGACGATCTGGAACTCTCCTGACAGGACC 1733
Query 204218 CCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCCTCGTTGTTGCCGAAAATCTGA 204277
| |||||| | | |||| ||||| | | |||| | |||||||||||| | |||||
Sbjct 1732 CGGCGGGTGTAGATGTTGCTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGG 1673
Query 204278 GCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAGTTGCGCACACCGTATTTTTGG 204337
|||||| |||||||||||| || ||||| |||||| ||| | ||| |||| || |
Sbjct 1672 GCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGCTTGGCG 1613
Query 204338 ACCCTGCGCTTCAGAGAGGTCCAGTCGTGCATCGCACTGGGTTTCACGCCCCACATGTCG 204397
| | | |||||| ||||||| || | |||| || |||||||||||
Sbjct 1612 ATCTTCTCCTTCAGCAGCTTCCAGTCCCACAGGTCGGTGGGCGTCTTCTCCCACATGTCG 1553
Query 204398 AACTGAAAGATGCCTTGACTGACTGGGCTGCCCTTGTACGTCGGATAAGGCTGATCCTCT 204457
|||| | |||||| | ||||| ||| | ||| |||||| || || |||
Sbjct 1552 TACTGGAGGATGCCCTTGCTGACGGGGGAG-CCTCGTACGTGTCGTAGGGGCCCAGCTCG 1494
Query 204458 TCTGCCAGCTTGCACGAGGCGGCCATGGCGTGATAGTACATGGTCTCAAAGATCTGAACG 204517
| ||||| | ||| ||| ||| |||| ||||| ||||||||||||||||| | |
Sbjct 1493 GCGGCCAGTTCGCAGCTGGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATCTGGATG 1434
Query 204518 TTTA--ATCTGGCGGCCTCCGTTCCGTCAAACGCCAGACCCAGCATGGCAAACACGTCCG 204575
|| | | ||| |||||| | | ||||| | || || || | || |||| |
Sbjct 1433 TTCAGCAGCTG--GGCCTCGGGGCTTTCAAAGGGGTAACGCATCAGGATGAAGGCGTCGG 1376
Query 204576 CCAAGCCCTGCACTCCGATTCCCAACGGTCTGT 204608
||| |||||| || ||||| || | ||| ||||
Sbjct 1375 CCAGGCCCTGGACGCCGATACCGATCGGCCTGT 1343
Score = 105 bits (116), Expect = 1e-17
Identities = 112/145 (77%), Gaps = 2/145 (1%)
Strand=Plus/Minus
Query 203917 CCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGTGAATGTT 203976
||| ||| | | ||||||| | |||||||| |||||| ||||| ||||| |||||
Sbjct 2237 CCAGCCGAAGAAGTGCATGCTGGTCAGTTTGCCGTAGTTGGGCTCGGCGATGTGGATGTT 2178
Query 203977 CAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCCATATTGATAATGGTCT 204035
|| |||||||| ||||||||| | |||||| || || || ||||| || | | ||||
Sbjct 2177 CATGGACTGGCTCTGGTCGATGTA-GGCGCCGCGGTCGGCAGCCATCTTCAGGACCGTCT 2119
Query 204036 TCTGCGAAATCTCCCACACCGTCTT 204060
|||| || ||||||||||| |||||
Sbjct 2118 TCTGGGAGATCTCCCACACTGTCTT 2094
>seq54337
Length=1748
Score = 84.2 bits (92), Expect = 3e-11
Identities = 93/124 (75%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 204189 TGATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTT 204248
|| ||| |||||| ||||| || ||||||| |||||| | | |||| ||||| | || |
Sbjct 1376 TGCTGACCTGAAACTCTCCAGAGAGCACCCTGCGGGTGTAGATGTTGCTGGTGTACGGCT 1317
Query 204249 CGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGA 204308
| | | ||| |||||||| | ||||| || ||| || ||||||||||| |||| |
Sbjct 1316 CAATGGACTCATTGTTGCCCAGGATCTGGGCAGTGGAAGCTGTGGGCATGGGGGCCAACA 1257
Query 204309 GCAG 204312
||||
Sbjct 1256 GCAG 1253
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 789932004401120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |