Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq44246 203 5e-47 seq54337 84.2 3e-11 >seq44246 Length=4029 Score = 203 bits (224), Expect = 5e-47 Identities = 584/886 (66%), Gaps = 18/886 (2%) Strand=Plus/Minus Query 204884 TCCACGATCTCGGTGCACAAGTTACCGCACTTCACCACCCCCACATGCTGCTGGTTAGAC 204943 || ||||| || ||||| | ||| | |||||| | |||| | ||||||||| | Sbjct 1151 TCAACGATTTCCGTGCAGAGGTTGCTGCACTTGATGGTTCCCAGGTTCTGCTGGTTGCTC 1092 Query 204944 TTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATTCCGTTCTCCATCTGAGA-TCG 205002 || | ||| |||| ||| ||||||| |||| ||||| | || |||| |||| || ||| Sbjct 1091 TTCCTGTTGCAGGCGTCTTTGTACAGCATGTACGGCGTGCCCGACTCCGTCTGGGACTCG 1032 Query 205003 CAGAATGTGGGTCCACAATTCGCGAGCCT---CCACTTGCTTCACGTACATCCCTTGAGA 205059 || | | | ||||| | |||||| |||| |||| || | |||| | Sbjct 1031 ATGATGGCGTG-CCACACCTGCTGAGCCTTCACCACACGCTTGACC--CGGCCCTCCCG- 976 Query 205060 CTCGTATTTTGTGTACAGCGCCACAAAGTCAGAACC---GTACACGTCCATCAGCCCTGG 205116 ||| |||| ||||| ||| | |||| || || | || |||||| |||| || Sbjct 975 CTCATATTGGGTGTAGAGCTTCTCAAACTCCTCCCCCCAGCACTCGTCCA---GCCCGGG 919 Query 205117 ACATTTTTTGGGACACATCAGAGACCACATCTGATCGTCTTTCACCCTCTCCATAAACAG 205176 | | ||||||||||||||||||| ||| | | | |||||||| ||| ||||| Sbjct 918 GCTCTCGCTGGGACACATCAGAGACCAGTCCTGGTTGCTCTCCACCCTCTTCATGAACAG 859 Query 205177 GTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGTT 205236 |||| |||||||| |||||| || ||||| | ||| || | || | || ||| Sbjct 858 GTCGGGGATCCACAAGCCGTAGAAGAGATCTCTGGCTCTCTGCTCCTCCTTCCCCGTGTT 799 Query 205237 CTTTTTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGGCTCTAACCACACGGCCA 205295 ||| |||| ||||| ||| || | | ||| |||||||||||| | ||| ||| | Sbjct 798 CTTCTTCAGCTCCAG-GAAGTCGAACACGTCAAAGTGCCACGGCTCCAGGTACATGGCGA 740 Query 205296 TTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACTC 205355 ||||| || | |||||| || |||||||| || ||| | | |||| | || | Sbjct 739 AGGCGCCGGGTCGCTTGTTGCCGCCCTGGTCGACATAGCGTGCTGTGTTGTTGTAGACCC 680 Query 205356 GCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGGCCGAGCCTTCAG 205415 |||||| || ||||| ||||||| | | ||||| |||| | |||| || | Sbjct 679 TCAGCATGGGGACCAGCCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTCCCGGTGG 620 Query 205416 CCCTCACGTTGGAGATGGCCGCGCCAATCCCGCCAGAACACTTGGCGATCTGGGCGCACT 205475 | | | | || |||| | || || || || | |||||| ||| | || |||| Sbjct 619 ATCGGATGCAGCTGACGGCCACACCGATTCCTCCTGCCGACTTGGAGATGAGTGCACACT 560 Query 205476 CTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGTCACCAGATAGCACG 205535 | ||| ||| ||||||||| ||||| |||||| || || | ||| |||| Sbjct 559 GCTTCAGCGTGTCGTAGATGCCCTCGATGCTGTCGTCCTTCATGGTGAGCAGGAAGCAGC 500 Query 205536 AAGCCAGCTTGGCAAAGTTGGTGCCCGCGTGGAAGAGCGTGGGGCTGGCGTGGCTGAAGC 205595 | |||| | |||||| || |||| ||||||||||||| ||||||| |||| | Sbjct 499 TGGAGAGCTGAGGCCGGTTGGTTCCTGCGTTGAAGAGCGTGGGGGAGGCGTGGGTGAACC 440 Query 205596 GCTTCTCGCTCAAACA-CCTGTAGGTCTCCAGCACGCTCTCCAGATCGAAGCCGTGAATA 205654 |||||| | | || |||||||||| | || || | ||| ||| || Sbjct 439 ACTTCTC-CGAGAGCAGGTTGTAGGTCTCGATGGCGGCGTCGATATCCGTCTTGTGGATT 381 Query 205655 CCTATGGCGATCCTCATGAAGAGGTGTTGAGGTCTCTCCATCACCCTCTCGTTCACCTTG 205714 || | | | |||||||| | ||| || || | |||| ||| | |||| | ||| Sbjct 380 CCGACCGACACCCTCATGAGCATGTGCTGCGGCCGCTCCGCCACTTTGCCGTTGATCTTC 321 Query 205715 AGCAGATAGGCTCTCTCTAGGGTGCGGATGGCAAAAAAGTTGAAGG 205760 ||||| |||| || ||| || || || | | || |||||| ||| Sbjct 320 AGCAGGTAGGATCGCTCCAGCGTCTTGAAGCCGAAGAAGTTGTAGG 275 Score = 185 bits (204), Expect = 1e-41 Identities = 353/513 (69%), Gaps = 8/513 (2%) Strand=Plus/Minus Query 204100 CCTGA-TCGAGCCGTTGTCGGCCATCAGTCTCATCCTCGTCTCCTCCCCCCACATGCCCA 204158 ||||| | || ||||||| | ||||| || || ||||||| ||||||| |||| Sbjct 1851 CCTGAATGGATCCGTTGTTACCGATCAGCTGGTTCTTCATCTCCTCGCCCCACA-GCCCT 1793 Query 204159 ACCTGA-TCAGCTCCCGCACCAGGTGGGGGTTGATGATCTGAAAGTCTCCGGACAGCACC 204217 || |||| ||| | ||| |||||||||| |||||| || ||||| ||||| ||| Sbjct 1792 CTCTCCGTCAGGTCCTTGAGCAGATGGGGGTTGACGATCTGGAACTCTCCTGACAGGACC 1733 Query 204218 CCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCCTCGTTGTTGCCGAAAATCTGA 204277 | |||||| | | |||| ||||| | | |||| | |||||||||||| | ||||| Sbjct 1732 CGGCGGGTGTAGATGTTGCTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGG 1673 Query 204278 GCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAGTTGCGCACACCGTATTTTTGG 204337 |||||| |||||||||||| || ||||| |||||| ||| | ||| |||| || | Sbjct 1672 GCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGCTTGGCG 1613 Query 204338 ACCCTGCGCTTCAGAGAGGTCCAGTCGTGCATCGCACTGGGTTTCACGCCCCACATGTCG 204397 | | | |||||| ||||||| || | |||| || ||||||||||| Sbjct 1612 ATCTTCTCCTTCAGCAGCTTCCAGTCCCACAGGTCGGTGGGCGTCTTCTCCCACATGTCG 1553 Query 204398 AACTGAAAGATGCCTTGACTGACTGGGCTGCCCTTGTACGTCGGATAAGGCTGATCCTCT 204457 |||| | |||||| | ||||| ||| | ||| |||||| || || ||| Sbjct 1552 TACTGGAGGATGCCCTTGCTGACGGGGGAG-CCTCGTACGTGTCGTAGGGGCCCAGCTCG 1494 Query 204458 TCTGCCAGCTTGCACGAGGCGGCCATGGCGTGATAGTACATGGTCTCAAAGATCTGAACG 204517 | ||||| | ||| ||| ||| |||| ||||| ||||||||||||||||| | | Sbjct 1493 GCGGCCAGTTCGCAGCTGGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATCTGGATG 1434 Query 204518 TTTA--ATCTGGCGGCCTCCGTTCCGTCAAACGCCAGACCCAGCATGGCAAACACGTCCG 204575 || | | ||| |||||| | | ||||| | || || || | || |||| | Sbjct 1433 TTCAGCAGCTG--GGCCTCGGGGCTTTCAAAGGGGTAACGCATCAGGATGAAGGCGTCGG 1376 Query 204576 CCAAGCCCTGCACTCCGATTCCCAACGGTCTGT 204608 ||| |||||| || ||||| || | ||| |||| Sbjct 1375 CCAGGCCCTGGACGCCGATACCGATCGGCCTGT 1343 Score = 105 bits (116), Expect = 1e-17 Identities = 112/145 (77%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 203917 CCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGTGAATGTT 203976 ||| ||| | | ||||||| | |||||||| |||||| ||||| ||||| ||||| Sbjct 2237 CCAGCCGAAGAAGTGCATGCTGGTCAGTTTGCCGTAGTTGGGCTCGGCGATGTGGATGTT 2178 Query 203977 CAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCCATATTGATAATGGTCT 204035 || |||||||| ||||||||| | |||||| || || || ||||| || | | |||| Sbjct 2177 CATGGACTGGCTCTGGTCGATGTA-GGCGCCGCGGTCGGCAGCCATCTTCAGGACCGTCT 2119 Query 204036 TCTGCGAAATCTCCCACACCGTCTT 204060 |||| || ||||||||||| ||||| Sbjct 2118 TCTGGGAGATCTCCCACACTGTCTT 2094 >seq54337 Length=1748 Score = 84.2 bits (92), Expect = 3e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 204189 TGATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTT 204248 || ||| |||||| ||||| || ||||||| |||||| | | |||| ||||| | || | Sbjct 1376 TGCTGACCTGAAACTCTCCAGAGAGCACCCTGCGGGTGTAGATGTTGCTGGTGTACGGCT 1317 Query 204249 CGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGA 204308 | | | ||| |||||||| | ||||| || ||| || ||||||||||| |||| | Sbjct 1316 CAATGGACTCATTGTTGCCCAGGATCTGGGCAGTGGAAGCTGTGGGCATGGGGGCCAACA 1257 Query 204309 GCAG 204312 |||| Sbjct 1256 GCAG 1253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 789932004401120