Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq6427 129 1e-24 seq152718 113 1e-19 seq152719 111 4e-19 seq59939 100 7e-16 seq4507 84.2 5e-11 >seq6427 Length=3314 Score = 129 bits (142), Expect = 1e-24 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 |||||||| ||||| || |||||||| |||| ||||||||| | | || | |||||| Sbjct 3123 AGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCT 3182 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| ||||| ||||| || | |||||| || || ||| ||||| ||| Sbjct 3183 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCC 3242 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| || ||||| |||||| | | || || |||| ||||| ||| Sbjct 3243 TGGATCTTGGCCTTGACATTTTCGATGGTGTCGCTGGGCTCAACCTCCAGGGTGATGGTC 3302 Query 199598 TTACCCGTGAG 199608 || |||||||| Sbjct 3303 TTGCCCGTGAG 3313 >seq152718 Length=3078 Score = 113 bits (124), Expect = 1e-19 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 || |||||| ||||| || ||||| || |||| | ||||||| | | ||| | ||||| Sbjct 2161 CAAGACAAGATGGAGGGTGGACTCTTTCTGGATGCTGTAGTCGGAGAGAGTGCGACCATC 2220 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| ||||| ||||| || | | ||| || | | || ||||| || Sbjct 2221 TTCCAGCTGCTTGCCGGCAAAGATCAGCCTGTACTGTTCAGAAGGGATGCCTTCCTTATC 2280 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||||||||| || || || | |||||| | | ||| || |||| ||||| || Sbjct 2281 CTGAATCTTAACTTTGACATTCTCAATGGTGTCGCTGGGTTCAACCTCCAGAGTGATGGT 2340 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||||| || || || |||||||| || || Sbjct 2341 CTTACCAGTCAGGGTCTTCACAAAGATCTG 2370 >seq152719 Length=2073 Score = 111 bits (122), Expect = 4e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || ||||| ||||| || ||||| || |||| ||||||||| | | ||| | || ||| Sbjct 59 AGCACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCGTCT 118 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| ||||| ||||| || | |||||| || ||| || || || ||| Sbjct 119 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCAGGAGGGATGCCCTCCTTATCC 178 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| || || || | |||||| | | ||| || |||| ||||| | | Sbjct 179 TGGATCTTAGCTTTGACATTCTCAATGGTGTCGCTGGGTTCAACCTCCAGAGTGATGGAC 238 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || |||||||| || || Sbjct 239 TTACCAGTCAGGGTCTTCACAAAGATCTG 267 Score = 111 bits (122), Expect = 4e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 199436 GACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCG 199495 ||||| || |||| ||||||||| | | ||| | || |||||||||||||| ||||| Sbjct 305 GACTCTTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCGTCTTCCAGCTGCTTGCCGGCA 364 Query 199496 AAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACG 199555 |||||||| | ||||||||| ||| || ||||| ||||| ||||| || || Sbjct 365 AAGATGAGCCTCTGCTGGTCTGGAGGGATGCCTTCCTTATCCTGGATCTTAGCTTTGACA 424 Query 199556 GATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTC 199615 || | |||||| | | ||| || ||| ||||| ||||| || ||||| || ||| Sbjct 425 TTCTCAATGGTGTCGTTGGGTTCAACCACCAGAGTGATAGTCTTGCCTGTGAGGGTCTTC 484 Query 199616 ACAAAAATTTG 199626 ||||| || || Sbjct 485 ACAAAGATCTG 495 Score = 104 bits (114), Expect = 5e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| ||||| |||| || || || || |||| ||| || || | || || | ||||| Sbjct 514 CAGCACAAGATGGATGGTGGATTCTTTCTGGATGTTATAATCTGACATGGTGCGACCATC 573 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| ||||| ||||| || | |||||| || ||| || || || || Sbjct 574 TTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCAGGAGGGATGCCCTCCTTATC 633 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| || || || | |||||| | | ||| || |||| ||||| || Sbjct 634 CTGGATCTTAGCTTTTACATTCTCAATGGTGTCGCTGGGTTCAACCTCCAGAGTGATAGT 693 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||||| || || || |||||||| || || Sbjct 694 CTTACCAGTCAGGGTCTTCACAAAGATCTG 723 >seq59939 Length=800 Score = 100 bits (110), Expect = 7e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531 ||||||||||||||||||||||| ||||| || | |||||| || || ||| ||||| Sbjct 8 CCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCC 67 Query 199532 CGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTG 199591 ||||| ||||| ||| || ||||| ||||| | | || || || | ||| Sbjct 68 TTGTCCTGGATCTTGGCCTTGACATTTTCGATTGTGTCACTAGGCTCAACCTCGAGGGTG 127 Query 199592 ATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| |||||||| || |||||||| || || Sbjct 128 ATGGTCTTGCCCGTGAGGGTCTTCACAAAGATCTG 162 >seq4507 Length=8544 Score = 84.2 bits (92), Expect = 5e-11 Identities = 77/96 (80%), Gaps = 1/96 (1%) Strand=Plus/Plus Query 199434 TCGACTCCTTT-TGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492 ||| | ||||| |||| ||||||||| | || || | |||||| |||||||| || ||| Sbjct 6349 TCGTCACCTTTCTGGATGTTGTAGTCTGACAGTGTGCGTCCATCCTCCAGCTGTTTGCCG 6408 Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 |||||||| ||||||||||| || || ||||||| Sbjct 6409 GCGAAGATCAGACGCTGCTGATCAGGGGGAATTCCT 6444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1170983927498634