Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_013756.1
Length=368454
Score E
Sequences producing significant alignments: (Bits) Value
seq6427 129 1e-24
seq152718 113 1e-19
seq152719 111 4e-19
seq59939 100 7e-16
seq4507 84.2 5e-11
>seq6427
Length=3314
Score = 129 bits (142), Expect = 1e-24
Identities = 143/191 (75%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
|||||||| ||||| || |||||||| |||| ||||||||| | | || | ||||||
Sbjct 3123 AGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCT 3182
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
||||||||||| ||||| ||||| || | |||||| || || ||| ||||| |||
Sbjct 3183 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCC 3242
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| ||||| ||| || ||||| |||||| | | || || |||| ||||| |||
Sbjct 3243 TGGATCTTGGCCTTGACATTTTCGATGGTGTCGCTGGGCTCAACCTCCAGGGTGATGGTC 3302
Query 199598 TTACCCGTGAG 199608
|| ||||||||
Sbjct 3303 TTGCCCGTGAG 3313
>seq152718
Length=3078
Score = 113 bits (124), Expect = 1e-19
Identities = 151/210 (72%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476
|| |||||| ||||| || ||||| || |||| | ||||||| | | ||| | |||||
Sbjct 2161 CAAGACAAGATGGAGGGTGGACTCTTTCTGGATGCTGTAGTCGGAGAGAGTGCGACCATC 2220
Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536
|||||||||||| ||||| ||||| || | | ||| || | | || ||||| ||
Sbjct 2221 TTCCAGCTGCTTGCCGGCAAAGATCAGCCTGTACTGTTCAGAAGGGATGCCTTCCTTATC 2280
Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596
||||||||| || || || | |||||| | | ||| || |||| ||||| ||
Sbjct 2281 CTGAATCTTAACTTTGACATTCTCAATGGTGTCGCTGGGTTCAACCTCCAGAGTGATGGT 2340
Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|||||| || || || |||||||| || ||
Sbjct 2341 CTTACCAGTCAGGGTCTTCACAAAGATCTG 2370
>seq152719
Length=2073
Score = 111 bits (122), Expect = 4e-19
Identities = 150/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
|| ||||| ||||| || ||||| || |||| ||||||||| | | ||| | || |||
Sbjct 59 AGCACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCGTCT 118
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
||||||||||| ||||| ||||| || | |||||| || ||| || || || |||
Sbjct 119 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCAGGAGGGATGCCCTCCTTATCC 178
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| ||||| || || || | |||||| | | ||| || |||| ||||| | |
Sbjct 179 TGGATCTTAGCTTTGACATTCTCAATGGTGTCGCTGGGTTCAACCTCCAGAGTGATGGAC 238
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| || || || |||||||| || ||
Sbjct 239 TTACCAGTCAGGGTCTTCACAAAGATCTG 267
Score = 111 bits (122), Expect = 4e-19
Identities = 139/191 (73%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 199436 GACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCG 199495
||||| || |||| ||||||||| | | ||| | || |||||||||||||| |||||
Sbjct 305 GACTCTTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCGTCTTCCAGCTGCTTGCCGGCA 364
Query 199496 AAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACG 199555
|||||||| | ||||||||| ||| || ||||| ||||| ||||| || ||
Sbjct 365 AAGATGAGCCTCTGCTGGTCTGGAGGGATGCCTTCCTTATCCTGGATCTTAGCTTTGACA 424
Query 199556 GATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTC 199615
|| | |||||| | | ||| || ||| ||||| ||||| || ||||| || |||
Sbjct 425 TTCTCAATGGTGTCGTTGGGTTCAACCACCAGAGTGATAGTCTTGCCTGTGAGGGTCTTC 484
Query 199616 ACAAAAATTTG 199626
||||| || ||
Sbjct 485 ACAAAGATCTG 495
Score = 104 bits (114), Expect = 5e-17
Identities = 149/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476
||| ||||| |||| || || || || |||| ||| || || | || || | |||||
Sbjct 514 CAGCACAAGATGGATGGTGGATTCTTTCTGGATGTTATAATCTGACATGGTGCGACCATC 573
Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536
|||||||||||| ||||| ||||| || | |||||| || ||| || || || ||
Sbjct 574 TTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCAGGAGGGATGCCCTCCTTATC 633
Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596
||| ||||| || || || | |||||| | | ||| || |||| ||||| ||
Sbjct 634 CTGGATCTTAGCTTTTACATTCTCAATGGTGTCGCTGGGTTCAACCTCCAGAGTGATAGT 693
Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|||||| || || || |||||||| || ||
Sbjct 694 CTTACCAGTCAGGGTCTTCACAAAGATCTG 723
>seq59939
Length=800
Score = 100 bits (110), Expect = 7e-16
Identities = 115/155 (74%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531
||||||||||||||||||||||| ||||| || | |||||| || || ||| |||||
Sbjct 8 CCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCC 67
Query 199532 CGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTG 199591
||||| ||||| ||| || ||||| ||||| | | || || || | |||
Sbjct 68 TTGTCCTGGATCTTGGCCTTGACATTTTCGATTGTGTCACTAGGCTCAACCTCGAGGGTG 127
Query 199592 ATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| ||||| |||||||| || |||||||| || ||
Sbjct 128 ATGGTCTTGCCCGTGAGGGTCTTCACAAAGATCTG 162
>seq4507
Length=8544
Score = 84.2 bits (92), Expect = 5e-11
Identities = 77/96 (80%), Gaps = 1/96 (1%)
Strand=Plus/Plus
Query 199434 TCGACTCCTTT-TGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492
||| | ||||| |||| ||||||||| | || || | |||||| |||||||| || |||
Sbjct 6349 TCGTCACCTTTCTGGATGTTGTAGTCTGACAGTGTGCGTCCATCCTCCAGCTGTTTGCCG 6408
Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
|||||||| ||||||||||| || || |||||||
Sbjct 6409 GCGAAGATCAGACGCTGCTGATCAGGGGGAATTCCT 6444
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1170983927498634
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |