Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq6427 138 1e-27 seq231358 114 1e-20 seq152719 104 2e-17 seq59938 100 3e-16 seq59939 84.2 2e-11 >seq6427 Length=3314 Score = 138 bits (152), Expect = 1e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 38265 CTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAAACGCTTAAA 38324 ||||||||||| ||||||||| | || || ||| ||| ||||| | | ||| | || Sbjct 3313 CTCACGGGCAAGACCATCACCCTGGAGGTTGAGCCCAGCGACACCATCGAAAATGTCAAG 3254 Query 38325 GAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGC 38384 | || |||| ||||| || || |||||| | || || ||| |||| || | || ||| Sbjct 3253 GCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAGCAGAGGCTGATCTTTGCCGGC 3194 Query 38385 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTG 38444 || |||||||| || | ||||||||| ||||||||||||||| ||||| | || || Sbjct 3193 AAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCCACCCTC 3134 Query 38445 CATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||| | || || ||| |||||||||| Sbjct 3133 CATCTTGTCCTCCGTCTGAGAGGCGG 3108 >seq231358 Length=2322 Score = 114 bits (126), Expect = 1e-20 Identities = 98/121 (81%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 133279 ACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATG 133338 ||||| || ||||||||||||||||||||||||||||| ||||||| |||||| |||| Sbjct 1235 ACCAGGTTCTCGTTGACGATGCCGTCGCTGGCGGCGAAGAAGGCCAACACGTGGGAGATG 1294 Query 133339 AAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACC 133398 || | | ||| | ||| |||| |||||||| || ||||||||||||||||||| Sbjct 1295 AAGTACCTCTCCTCGTCCTTCAGAGACTCCCAGTGCTGCAGGTCCTTGGACAGGTCCACC 1354 Query 133399 T 133399 | Sbjct 1355 T 1355 Score = 91.5 bits (100), Expect = 1e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 ||| |||||||||||| ||||| |||||||| | ||||||||||||||| || || Sbjct 1035 GTACGTGTCGATGAGGAGGCTGTACATCTCCGAGTGGATGTTCTCCATGGCGATCTGGAA 1094 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACC 133281 ||| || ||||| || ||||| ||||||||| || || ||| ||||| ||| Sbjct 1095 GCCATAGAAGCAGCGGGCCTCCGTCACCTGCACCTCCTGCATGAAGCGCTCCACC 1149 >seq152719 Length=2073 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || || || ||||||| | || || || ||| | Sbjct 270 ATGCAGATCTTTGTGAAGACCCTGACTGGTAAGTCCATCACTCTGGAGGTTGAACCCAGC 211 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | |||| || |||| || || ||||| || || | || || Sbjct 210 GACACCATTGAGAATGTCAAAGCTAAGATCCAGGATAAGGAGGGCATCCCTCCTGATCAG 151 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | || ||||| |||||||| |||| ||||| ||| |||||||||| Sbjct 150 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGACGGCCGCACTCTCTCCGACTACAAC 91 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| || || | || || ||| | ||||| || ||||||| || Sbjct 90 ATCCAGAAAGAGTCCACCCTCCATCTTGTGCTCCGCCTGAGAGGAGG 44 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 || || || || || || || ||||| ||||| || ||||| | | || || ||| | Sbjct 498 ATTCAGATCTTTGTGAAGACCCTCACAGGCAAGACTATCACTCTGGTGGTTGAACCCAAC 439 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | |||| || |||| || || || || || || | ||||| Sbjct 438 GACACCATTGAGAATGTCAAAGCTAAGATCCAGGATAAGGAAGGCATCCCTCCAGACCAG 379 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| ||||||| | || ||||| |||||||| |||| ||||| ||| |||||||||| Sbjct 378 CAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGACGGCCGCACTCTCTCCGACTACAAC 319 Query 38424 ATCCAAAAGGAAGCGACGCTGCATT----TGGTGCTGCGTTTGAGAGGCGG 38470 ||||| || || | ||||||| |||| |||| ||||||| || Sbjct 318 ATCCAGAAAGAGTC----CTGCATTCATCTGGTCTTGCGGCTGAGAGGAGG 272 >seq59938 Length=2926 Score = 100 bits (110), Expect = 3e-16 Identities = 154/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38254 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGC 38313 |||| || || ||||| ||||| ||||||||| | || || ||| ||| ||||| | | Sbjct 2926 TCGTCAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTTGAGCCCAGCGACACCATTG 2867 Query 38314 AAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCA 38373 ||| | || | || |||| ||||| || || |||||| | || || ||| |||| | Sbjct 2866 AAAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAGCAGAGGCTGA 2807 Query 38374 TTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGG 38433 | | || ||||| || ||| || | ||||||||| | | ||||||||||| |||| Sbjct 2806 TCTTTGCCGGCAAGCATTCGGAAGATGGCCGCACCCTCT-CTA-TACAACATCCAGAAGG 2749 Query 38434 AAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 | | || || | | |||| |||| | |||| || || Sbjct 2748 AGTCCACCCTCCGTCTGGTCCTGCATCTGAGGGGTGG 2712 >seq59939 Length=800 Score = 84.2 bits (92), Expect = 2e-11 Identities = 120/169 (71%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||| ||||| || || || || || ||||||||||| ||||||||| |||| || ||| | Sbjct 169 AAACATGCAGATCTTTGTGAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTTGAGCC 110 Query 38300 CACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | |||| | ||| | || | || |||| ||||| || || |||||| | || Sbjct 109 TAGTGACACAATCGAAAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGA 50 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACC 38408 || ||| |||| || | || || || |||||||| || | |||||| Sbjct 49 TCAGCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGCCGCACC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496887277415680