Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq6427 138 1e-27
seq231358 114 1e-20
seq152719 104 2e-17
seq59938 100 3e-16
seq59939 84.2 2e-11
>seq6427
Length=3314
Score = 138 bits (152), Expect = 1e-27
Identities = 154/206 (75%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 38265 CTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAAACGCTTAAA 38324
||||||||||| ||||||||| | || || ||| ||| ||||| | | ||| | ||
Sbjct 3313 CTCACGGGCAAGACCATCACCCTGGAGGTTGAGCCCAGCGACACCATCGAAAATGTCAAG 3254
Query 38325 GAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGC 38384
| || |||| ||||| || || |||||| | || || ||| |||| || | || |||
Sbjct 3253 GCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAGCAGAGGCTGATCTTTGCCGGC 3194
Query 38385 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTG 38444
|| |||||||| || | ||||||||| ||||||||||||||| ||||| | || ||
Sbjct 3193 AAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCCACCCTC 3134
Query 38445 CATTTGGTGCTGCGTTTGAGAGGCGG 38470
||| | || || ||| ||||||||||
Sbjct 3133 CATCTTGTCCTCCGTCTGAGAGGCGG 3108
>seq231358
Length=2322
Score = 114 bits (126), Expect = 1e-20
Identities = 98/121 (81%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 133279 ACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATG 133338
||||| || ||||||||||||||||||||||||||||| ||||||| |||||| ||||
Sbjct 1235 ACCAGGTTCTCGTTGACGATGCCGTCGCTGGCGGCGAAGAAGGCCAACACGTGGGAGATG 1294
Query 133339 AAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACC 133398
|| | | ||| | ||| |||| |||||||| || |||||||||||||||||||
Sbjct 1295 AAGTACCTCTCCTCGTCCTTCAGAGACTCCCAGTGCTGCAGGTCCTTGGACAGGTCCACC 1354
Query 133399 T 133399
|
Sbjct 1355 T 1355
Score = 91.5 bits (100), Expect = 1e-13
Identities = 89/115 (77%), Gaps = 0/115 (0%)
Strand=Plus/Plus
Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226
||| |||||||||||| ||||| |||||||| | ||||||||||||||| || ||
Sbjct 1035 GTACGTGTCGATGAGGAGGCTGTACATCTCCGAGTGGATGTTCTCCATGGCGATCTGGAA 1094
Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACC 133281
||| || ||||| || ||||| ||||||||| || || ||| ||||| |||
Sbjct 1095 GCCATAGAAGCAGCGGGCCTCCGTCACCTGCACCTCCTGCATGAAGCGCTCCACC 1149
>seq152719
Length=2073
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || || || || || || || || || ||||||| | || || || ||| |
Sbjct 270 ATGCAGATCTTTGTGAAGACCCTGACTGGTAAGTCCATCACTCTGGAGGTTGAACCCAGC 211
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | | | |||| || |||| || || ||||| || || | || ||
Sbjct 210 GACACCATTGAGAATGTCAAAGCTAAGATCCAGGATAAGGAGGGCATCCCTCCTGATCAG 151
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||| |||| || | || ||||| |||||||| |||| ||||| ||| ||||||||||
Sbjct 150 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGACGGCCGCACTCTCTCCGACTACAAC 91
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
||||| || || | || || ||| | ||||| || ||||||| ||
Sbjct 90 ATCCAGAAAGAGTCCACCCTCCATCTTGTGCTCCGCCTGAGAGGAGG 44
Score = 95.1 bits (104), Expect = 1e-14
Identities = 160/231 (69%), Gaps = 8/231 (3%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|| || || || || || || ||||| ||||| || ||||| | | || || ||| |
Sbjct 498 ATTCAGATCTTTGTGAAGACCCTCACAGGCAAGACTATCACTCTGGTGGTTGAACCCAAC 439
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | | | |||| || |||| || || || || || || | |||||
Sbjct 438 GACACCATTGAGAATGTCAAAGCTAAGATCCAGGATAAGGAAGGCATCCCTCCAGACCAG 379
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||| ||||||| | || ||||| |||||||| |||| ||||| ||| ||||||||||
Sbjct 378 CAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGACGGCCGCACTCTCTCCGACTACAAC 319
Query 38424 ATCCAAAAGGAAGCGACGCTGCATT----TGGTGCTGCGTTTGAGAGGCGG 38470
||||| || || | ||||||| |||| |||| ||||||| ||
Sbjct 318 ATCCAGAAAGAGTC----CTGCATTCATCTGGTCTTGCGGCTGAGAGGAGG 272
>seq59938
Length=2926
Score = 100 bits (110), Expect = 3e-16
Identities = 154/217 (71%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 38254 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGC 38313
|||| || || ||||| ||||| ||||||||| | || || ||| ||| ||||| | |
Sbjct 2926 TCGTCAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTTGAGCCCAGCGACACCATTG 2867
Query 38314 AAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCA 38373
||| | || | || |||| ||||| || || |||||| | || || ||| |||| |
Sbjct 2866 AAAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAGCAGAGGCTGA 2807
Query 38374 TTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGG 38433
| | || ||||| || ||| || | ||||||||| | | ||||||||||| ||||
Sbjct 2806 TCTTTGCCGGCAAGCATTCGGAAGATGGCCGCACCCTCT-CTA-TACAACATCCAGAAGG 2749
Query 38434 AAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
| | || || | | |||| |||| | |||| || ||
Sbjct 2748 AGTCCACCCTCCGTCTGGTCCTGCATCTGAGGGGTGG 2712
>seq59939
Length=800
Score = 84.2 bits (92), Expect = 2e-11
Identities = 120/169 (71%), Gaps = 0/169 (0%)
Strand=Plus/Minus
Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299
||| ||||| || || || || || ||||||||||| ||||||||| |||| || ||| |
Sbjct 169 AAACATGCAGATCTTTGTGAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTTGAGCC 110
Query 38300 CACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359
| |||| | ||| | || | || |||| ||||| || || |||||| | ||
Sbjct 109 TAGTGACACAATCGAAAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGA 50
Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACC 38408
|| ||| |||| || | || || || |||||||| || | ||||||
Sbjct 49 TCAGCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGCCGCACC 1
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496887277415680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |