Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_014036.1 Length=174436 Score E Sequences producing significant alignments: (Bits) Value seq449735 221 1e-52 seq506238 141 1e-28 seq508109 123 3e-23 seq522862 107 2e-18 seq434791 91.5 2e-13 seq494957 89.7 6e-13 seq353462 82.4 8e-11 seq128994 82.4 8e-11 >seq449735 Length=3187 Score = 221 bits (244), Expect = 1e-52 Identities = 424/621 (68%), Gaps = 12/621 (2%) Strand=Plus/Plus Query 41085 AAACTGTCTCTACCGACTCCAATTATGGCGGGTGTACGTACTCCTACGCGCCAGTTCTCC 41144 ||| | || ||||| || ||||||||||| ||||| ||||| || || |||||||| | Sbjct 25 AAAATTTCACTACCTACGCCAATTATGGCAGGTGTTCGTACGCCAACACGCCAGTTTAGC 84 Query 41145 AGTTGTGTAGTAATTGAATCGGGTGATTCTCTTGGTTCTCTTAACGCTGTAACCTCTGCG 41204 |||||| |||| || | || || |||| ||| ||||||| | ||||| Sbjct 85 TCGTGTGTATTAATAGAGTGTGGCGACAGCCTTGATTCAATTAACGCCACCTCGTCTGCA 144 Query 41205 ATCGTGAAGTATATTTCACAACGTGCTGGTATTGGGGTTAACGCGGGACATATTCGCGCA 41264 || || || || | || |||||||| || ||||| ||||||| || | ||||| ||| Sbjct 145 ATTGTTAAATACGTATCGCAACGTGCCGGCATTGGCATTAACGCAGGTCGCATTCGTGCA 204 Query 41265 ATGGGTTCTAAAATCCGTGGTGGTGAAGCTGTTCATACTGGTGTGATTCCTTTCTGGAAA 41324 ||||| | || || ||| ||||| ||||| ||| |||||||| | || Sbjct 205 CTGGGTAGCCACATTCGCAATGGCGAAGCGTACCATACGGGTTGTATTCCTTTTTATAAG 264 Query 41325 CATATCCAAACCGCTGTTAAATCCTGTTCACAGGGTGGCGTTCGTGGTGGTGCTGCAACA 41384 || | ||||| || |||||| |||||| || || || || ||||| || || ||||| Sbjct 265 CACTTTCAAACAGCGGTTAAAAGCTGTTCGCAAGGCGGTGTACGTGGCGGCGCAGCAACC 324 Query 41385 CTGTATTATCCTTTCTGGCATCTGGAAGTTGAAAACCTTCTGGTGTTGAAGAACAACAAA 41444 ||| || || | |||||| | ||||| |||||||| | || | || || ||| Sbjct 325 TTGTTCTACCCGCTTTGGCATTTAGAAGTAGAAAACCTGTTAGTACTTAAAAATAACCGC 384 Query 41445 GGCGTAGAAGAAAACCGCGTTCGTCATCTTGATTACGGTGTACAGCTTAACCAGTTGATG 41504 || || || || |||||||| |||||| | |||||||| |||||| |||| | | ||| Sbjct 385 GGGGTTGATGACAACCGCGTGCGTCATTTAGATTACGGCGTACAGTTTAATAAACTAATG 444 Query 41505 TATAAACGCTTAATGAATCGTGATTACATTACGCTGTTTAGTC---CGGATGTTGCTAAC 41561 || || ||||| || || |||||||| ||||||| | | |||| ||| | Sbjct 445 TACTCGCGTTTAATTAAAGACGACTACATTACCTTGTTTAGCCCCTCTGATG-TGCCA-- 501 Query 41562 GATCGTCTGTATGATCTGTTCTATGAAGCTGATCAGACTGCATTTGAAGAACTGTATGAA 41621 | || || ||| || | ||||| | |||| | ||||| | || |||| | Sbjct 502 ---GGCCTTTACGATGCATTTTTTGAAGACCA--AGAC-GAGTTTGACGCGCTTTATGTA 555 Query 41622 AGCCTGGAAAAAGACCCAACTGTTCGTAAGAAACGCATCAAAGCGGTTGACCTGTTCCAA 41681 | ||| ||||| | | ||||||| |||||||| ||||| |||| |||||| | Sbjct 556 AAATACGAACAAGACGAATCAATTCGTAAAAAACGCATTAAAGCTATTGAACTGTTCTCA 615 Query 41682 CTTTTAGCACAGGAACGCGCA 41702 | || || || ||||| ||| Sbjct 616 ATGTTTGCGCAAGAACGTGCA 636 Score = 87.8 bits (96), Expect = 2e-12 Identities = 193/283 (68%), Gaps = 6/283 (2%) Strand=Plus/Plus Query 42874 TTTTCGAAAGCCTGACGCAAAAACAACTTTCTTTCTTCTGGCGTCCGGAAGAAGTCGATC 42933 |||| |||| || | |||| || ||||| || || ||||| || |||||||| || Sbjct 1872 TTTTTGAAAAACTAATTGAAAAGCAGCTTTCGTTTTTTTGGCGCCCAGAAGAAGTAGACG 1931 Query 42934 TGTCTACTGACCGTATGCAGTATGCAAAACTTCCTGAACATGAAAAA-ATC-ATTTTCGA 42991 | | ||||| | | | | | | | ||||| |||||||| || ||||| | Sbjct 1932 TAAGCAAAGACCGCTTAGACTTTCAAGCATTACCTGATCATGAAAAGCATATATTTTTAA 1991 Query 42992 TTCTAACCTACAGTATCAAACCCTGTTAGATACCATTCAGGGACGTGGGCCTAACCTCGC 43051 | ||| || | |||||||| || | |||| | | || || ||| || ||| | || Sbjct 1992 GT--AACTTAAAATATCAAACATTGCTTGATAGCGTACAAGGGCGTTCACCAAACGTGGC 2049 Query 43052 ATTTTTGCCAATTGCATC-CGATGTGAGCATGGAAACCTGGATCGAAACGTGGGCGTTTA 43110 | | || |||| ||| | | ||| | ||||| ||||| |||||||||||||||| Sbjct 2050 CCTACTACCTATTGTATCGCTACCAGAGT-TAGAAACATGGATAGAAACGTGGGCGTTTA 2108 Query 43111 GTGAAACCATCCACAGCCGTAGTTACACGCATATTCAACGTAA 43153 ||||||| || || ||||| |||||||||||| ||||| Sbjct 2109 GTGAAACGATTCATAGCCGCTCGTACACGCATATTATTCGTAA 2151 >seq506238 Length=275 Score = 141 bits (156), Expect = 1e-28 Identities = 135/173 (78%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 51221 GAAGGTGGACAGCATTTAAACGTAAACGTGTTGCGCCGCGAAACTCTCCTGGATGCGGTT 51280 |||||||| || ||||||||||| || ||||| || || ||||| | ||||| ||| Sbjct 221 GAAGGTGGTCAACATTTAAACGTGAATGTGTTACGTCGTGAAACATTGGAAGATGCTGTT 162 Query 51281 GAACATCCTGAAAAATACCCACAGTTAACGATCCGTGTTTCTGGTTATGCAGTGCGTTTT 51340 |||| ||||||||||| ||||| ||||| || ||||| || ||||| |||||||||||| Sbjct 161 AAACACCCTGAAAAATATCCACAATTAACTATTCGTGTATCAGGTTACGCAGTGCGTTTT 102 Query 51341 AACTCACTGACCCCTGAACAGCAACGCGACGTTATCGCCCGAACCTTTACAGA 51393 |||||| | || || ||||| || | ||||| | | || || |||||||| Sbjct 101 AACTCATTAACACCAGAACAACAGCAAGACGTATTAACACGTACATTTACAGA 49 >seq508109 Length=334 Score = 123 bits (136), Expect = 3e-23 Identities = 143/191 (75%), Gaps = 4/191 (2%) Strand=Plus/Minus Query 90689 CATGAAATGAAGGTTGATTTGCTGTTGTCCGGCTTCTGCAAGATTAGC--CACTGAATTA 90746 ||| || || ||||||||||||| ||| || || | | | | || ||||| | | Sbjct 189 CATAAAGTGTAGGTTGATTTGCTTTTGACCAGCAGCGGTTAAACGCGCAACACTG--TCA 132 Query 90747 AACGCTACATCGAATCCAGCATGTTTGTATACTGATACCGCAACAGCCCCAGCAACAGCC 90806 ||||||||||| || ||||| ||||| || |||||||| |||| ||| |||||||| | Sbjct 131 AACGCTACATCAAAACCAGCGTGTTTATAAACTGATACAGCAATAGCACCAGCAACTGAT 72 Query 90807 GCTAAACGCGCTGCAACGTCTTTTGATACATCAGCAATGGTAAGGTTTGGTACAATGCCT 90866 ||||| || ||||| |||| ||| ||||||||||| || || ||||| | ||| ||| Sbjct 71 GCTAATTTAGCAGCAACTTCTTCTGACACATCAGCAATTGTTAGATTTGGGATAATACCT 12 Query 90867 TTAGAACGCGC 90877 | ||||| || Sbjct 11 TGTGAACGAGC 1 >seq522862 Length=256 Score = 107 bits (118), Expect = 2e-18 Identities = 177/253 (70%), Gaps = 2/253 (1%) Strand=Plus/Plus Query 42993 TCTAACCTACAGTATCAAACCCTGTTAGATACCATTCAGGGACGTGGGCCTAACCTCGCA 43052 || ||||| | |||||||| || ||||| | || ||||| ||| | |||||| | ||| Sbjct 2 TCAAACCTGAAATATCAAACACTATTAGACTCGATACAGGGTCGTAGTCCTAACATGGCA 61 Query 43053 TTTTTGCCAATTGCATCCG-ATGTGAGCATGGAAACCTGGATCGAAACGTGGGCGTTTAG 43111 || | || || | |||| | |||| | || || ||||||||||| ||| | || || Sbjct 62 TTACTTCCGATCGTATCCTTACCTGAGT-TAGAGACATGGATCGAAACCTGGTCCTTCAG 120 Query 43112 TGAAACCATCCACAGCCGTAGTTACACGCATATTCAACGTAACTTACACATCGATCCTTC 43171 ||| || |||||||||| || ||||| ||||||| |||||| || | || || || Sbjct 121 TGAGACTATCCACAGCCAGAGCTACACACATATTCTTCGTAACATATTCGATGACCCGTC 180 Query 43172 TGTACAGTTCGACCAAATCCTTCGCAATGAAGCGATTATGAAACGTTCCGCATCAATGAC 43231 || | | | || | || | |||||| | ||| |||||| | ||| |||| | Sbjct 181 TGAAGTGCTAGATGATATTGTCAGCAATGTTGAGATACAGAAACGAGCTGCACCAATCGC 240 Query 43232 ACGGTATTATGAT 43244 | | ||||||||| Sbjct 241 AAGCTATTATGAT 253 >seq434791 Length=745 Score = 91.5 bits (100), Expect = 2e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 40080 TTTCAGTTCGTTGTAATCAACGGTAAACTGTCTCTACAGTGGTATCAGCGTTCAGTTGAT 40139 ||||||||| |||| | ||||||||| ||| ||||||||||||| ||| Sbjct 555 TTTCAGTTCTTTGTGGCGGATAATAAACTGTCATGCCAGCTCTATCAGCGTTCAGCAGAT 614 Query 40140 GTCTTCTTAGGGTTGCCGTTCAATATCGCCTCCTATGCTCTCCTGACGCATATTATCGCT 40199 | ||| |||| ||||||| || || ||| |||||| || || || ||||| |||| Sbjct 615 TTATTCCTAGGTGTGCCGTTTAACATTGCCAGCTATGCCCTACTTACCCATATGGTCGCG 674 Query 40200 GATATTTGCGGGTACGAAGTGGGCGATCTGGTTTGGACTGGTGGTGATGTCCATATCTAT 40259 | ||||| || |||||||| || | | ||||| ||||||||| ||| || ||| Sbjct 675 CAAATTTGTGGTCTAGAAGTGGGGGAATTCATCTGGACAGGTGGTGATTGCCACATTTAT 734 Query 40260 AAAAA 40264 |||| Sbjct 735 CAAAA 739 >seq494957 Length=669 Score = 89.7 bits (98), Expect = 6e-13 Identities = 79/96 (82%), Gaps = 2/96 (2%) Strand=Plus/Minus Query 49383 ACAGTTCTAAAAAATATTGGCCCCTTAGCTCAATAGG-TAGAGCTAATCACTCATAATGG 49441 |||||| || |||| |||||||||||||||| | || |||||| | ||||||||| | Sbjct 164 ACAGTTATACAAAAAGTTGGCCCCTTAGCTCAGTTGGTTAGAGCACACGACTCATAATCG 105 Query 49442 TTAGGTTCCCGGTTCAAGTCACGGGAGGGGCCACCA 49477 |||||| ||| |||| |||| |||||||||||||| Sbjct 104 TTAGGTCCCCAGTTCGAGTC-TGGGAGGGGCCACCA 70 >seq353462 Length=332 Score = 82.4 bits (90), Expect = 8e-11 Identities = 157/224 (70%), Gaps = 12/224 (5%) Strand=Plus/Minus Query 42892 AAAAACAACTTTCTTTCTTCTGGCGTCCGGAAGAAGTCGATCTGTCTACTGACCGTATGC 42951 |||| ||||| || ||||| |||||||| |||||||||||| | || ||| |||||| Sbjct 222 AAAAGCAACTGTCGTTCTTTTGGCGTCCAGAAGAAGTCGATGTATCACGTGATCGTATGG 163 Query 42952 AGTAT-GCAAAACTTCCTGAACATGAA---AAAATCATTTTCGATTCTAACCTACAGTAT 43007 | ||| |||| |||| ||| ||| | ||| || || ||||||| ||||| Sbjct 162 ATTATGGCAATTTGTCCT-CACACGAACAGCATATCTTTATC---AGTAACCTAAAGTAT 107 Query 43008 CAAACCCTGTTAGATACCATTCAGGGACGTGGGCCTAACCTCGCATTTTTGCCAATTGCA 43067 ||||| || | || | || || || ||| | || ||| | | | |||||| | | | Sbjct 106 CAAACGCTACTCGACTCTATCCAAGGTCGTAGCCCAAACGTGGTGCTATTGCCATTGGTA 47 Query 43068 TCCGAT--GTGAGCATGGAAACCTGGATCGAAACGTGGGCGTTT 43109 | |||| ||||| | || || ||||| || |||||| ||||| Sbjct 46 T-CGATTCCTGAGC-TTGAGACATGGATTGAGACGTGGACGTTT 5 >seq128994 Length=861 Score = 82.4 bits (90), Expect = 8e-11 Identities = 133/189 (70%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 42966 CCTGAACATGAAAAAATCATTTTCGATTCTAACCTACAGTATCAAACCCTGTTAGATACC 43025 |||||||||||| || |||||| || || | |||| |||||| ||||||| | Sbjct 856 CCTGAACATGAACAACATATTTTCTTCTCAAATTTGAAGTACCAAACCTTGTTAGACTCA 797 Query 43026 ATTCAGGGACGTGGGCCTAACCTCGCATTTTTGCCAATTGCATC-CGATGTGAGCATGGA 43084 ||||| || || || || | ||||||||||| | | ||| | | ||| |||| Sbjct 796 ATTCAAGGCCGCTCACCGAATGTGGCATTTTTGCCTTTGGTATCGCTACCTGA-ATTGGA 738 Query 43085 AACCTGGATCGAAACGTGGGCGTTTAGTGAAACCATCCACAGCCGTAGTTACACGCATAT 43144 ||| ||||| ||||| ||| ||||| ||||||||| ||| ||| ||||| || || Sbjct 737 AACGTGGATTGAAACATGGTCGTTTTCTGAAACCATTCACTCGCGTTCGTACACTCACAT 678 Query 43145 TCAACGTAA 43153 | ||||| Sbjct 677 TATTCGTAA 669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 554401382128320