Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_014260.1 Length=172253 Score E Sequences producing significant alignments: (Bits) Value seq449735 176 5e-39 seq509673 127 2e-24 seq128994 86.0 7e-12 >seq449735 Length=3187 Score = 176 bits (194), Expect = 5e-39 Identities = 424/632 (67%), Gaps = 11/632 (2%) Strand=Plus/Minus Query 144696 TAAATTCGTGCAGTGCCTGAACGTTCAGTCATGAACAATTCGAAGAGGTCACGTGCCTTA 144755 ||||| || | || | || |||||| | |||| | ||| || ||| || ||| Sbjct 653 TAAATACGACCGGTACTTGCACGTTCTTGCGCAAACATTGAGAACAGTTCAATAGCTTTA 594 Query 144756 ATACGTTTCTTACGAATACTAGGGTCTTTTTCTGCAGCTTCATACAATTCACGG-AAACG 144814 || ||||| |||||||| ||||| ||| | | || | | || | || |||| Sbjct 593 ATGCGTTTTTTACGAATTGATTCGTCTTGTTC-GTATTTT-ACATAAAGCGCGTCAAACT 536 Query 144815 -GTCTTGGTCTTCGAAATAAGAATGGTAAAGCTCACCGCTCATTTCATGAGGACTAAACA 144873 |||||||||||| ||| | | || |||||| | || ||| || || ||||||| Sbjct 535 CGTCTTGGTCTTCAAAAAATGCATCGTAAAGGCCTG-GCACAT--CAGAGGGGCTAAACA 479 Query 144874 GAGTAATGTAATCATTCTTACCGAAACGTTCCATCATCAGGTCATTCAACTGGATTCCGT 144933 |||||||| || | ||| ||||| ||| || | ||| ||||| | |||| Sbjct 478 AGGTAATGTAGTCGTCTTTAATTAAACGCGAGTACATTAGTTTATTAAACTGTACGCCGT 419 Query 144934 AGTCCATATGTCGAATACGGTTTTCATCAACGCCCTTGTTATTTTTCAGAACGAGCAGAT 144993 | || | ||| || | ||||| |||||||| || ||||||||| || || | ||| | Sbjct 418 AATCTAAATGACGCACGCGGTTGTCATCAACCCCGCGGTTATTTTTAAGTACTAACAGGT 359 Query 144994 TTTCAACTTCCAAATGCCAAATAGGATA--ATAAGCAGTAGCAGCGCCGCCACGGATTCC 145051 |||| ||||| |||||||||| || || | ||| || || ||||||||||| | || Sbjct 358 TTTCTACTTCTAAATGCCAAAGCGGGTAGAACAAG--GTTGCTGCGCCGCCACGTACACC 301 Query 145052 ACCTTGTGAACATGATTTAACAGCAGTCTGGAAATGTTTCCAGAATGGAATAACACCGGT 145111 ||||| ||||| |||||| || || || || || || | || |||||| ||| || Sbjct 300 GCCTTGCGAACAGCTTTTAACCGCTGTTTGAAAGTGCTTATAAAAAGGAATACAACCCGT 241 Query 145112 ATGTTTGACTTCACCCATGCCAATACGAGAACCTTCAGCACGAATCATACCAACGTTGAT 145171 ||| | |||| || ||| ||| | ||| |||||||| ||| |||| || Sbjct 240 ATGGTACGCTTCGCCATTGCGAATGTGGCTACCCAGTGCACGAATGCGACCTGCGTTAAT 181 Query 145172 ACCAATACCTGCACGTTTAGAAATGTATTCAATTATCGAGTTAGCAGTTTTGTTAATAGA 145231 ||||| || ||||||| || | ||||| || || | | || |||||| || Sbjct 180 GCCAATGCCGGCACGTTGCGATACGTATTTAACAATTGCAGACGAGGTGGCGTTAATTGA 121 Query 145232 TTTCAGCGAGTCGCCTGCTTCAATAACCACACAAGAACTAAATTGGCGAGTCGGTGTACG 145291 | || |||||| || || | ||||| || ||||| ||||| || || ||||| Sbjct 120 ATCAAGGCTGTCGCCACACTCTATTAATACACACGAGCTAAACTGGCGTGTTGGCGTACG 61 Query 145292 CGCTCCAGCCATAATAGGGGTAGGCAACGAAA 145323 | || |||||||| || ||||| | |||| Sbjct 60 AACACCTGCCATAATTGGCGTAGGTAGTGAAA 29 >seq509673 Length=441 Score = 127 bits (140), Expect = 2e-24 Identities = 147/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 144917 ATTCAACTGGATTCCGTAGTCCATATGTCGAATACGGTTTTCATCAACGCCCTTGTTATT 144976 ||| ||||| | ||||| |||||||| || | |||||| || || ||||| |||||| Sbjct 221 ATTTAACTGTACGCCGTAATCCATATGACGGACACGGTTGTCTTCCACGCCGCGGTTATT 280 Query 144977 TTTCAGAACGAGCAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGC 145036 |||||| || | | |||||||| |||||||| | || ||| | || || || Sbjct 281 TTTCAGTACCAATAATGACTCAACTTCTAAATGCCATAATGGGTAAAACAACGTCGCTGC 340 Query 145037 GCCGCCACGGATTCCACCTTGTGAACATGATTTAACAGCAGTCTGGAAATGTTTCCAGAA 145096 |||||||||| || |||||||| || ||||||||||||| ||||| |||| |||| Sbjct 341 ACCGCCACGGACGCCGCCTTGTGAGCAGCATTTAACAGCAGTTTGGAACAGTTTATAGAA 400 Query 145097 TGGAATAACACCGGTATG 145114 ||| ||| ||| ||||| Sbjct 401 TGGGATACAACCCGTATG 418 >seq128994 Length=861 Score = 86.0 bits (94), Expect = 7e-12 Identities = 209/311 (67%), Gaps = 13/311 (4%) Strand=Plus/Plus Query 142728 ACCGTCTTTGAACAGGTGAGTGGCCCATTCTTTTTCTTG----GCGGTTAACTTCCATGA 142783 ||| |||||||| | || ||||||||||||||||||| || | ||| | || Sbjct 170 ACCATCTTTGAATAAGTACTTGGCCCATTCTTTTTCTTGTTCCGCCG----CTTTGACGA 225 Query 142784 AAATATCAACTGCTTCTTGTTCGCACTCTTGAGCAATTTTAACCCATTCGTCGCCATCAG 142843 | | ||| |||||||| | ||||| |||||||| || ||| | | || Sbjct 226 ATAAGTCATACGCTTCTTGCTTACACTCAGCAGCAATTTCTCCCATTTCTGGGTCGTCTT 285 Query 142844 TACCAAGTTGAAGCTGACGAATAATGTACTGGGTGCCTTTAAGGTGGAGCTGTTCATCAC 142903 ||||| || | | || | ||||| || || | || ||||| | |||||||| Sbjct 286 TACCACCCTGCATCAGAGCTAAAATGTGTTGTGTACTATTGAGGTGTAAGGCTTCATCAC 345 Query 142904 GTGCAATGAACTTCATAATCTTAGCATTACCTTCCATGATTTCCATGTTCTTATGGAAGT 142963 | ||||| || ||||| ||||||||||||||||| | | | |||| | ||| Sbjct 346 GGGCAATTAAGCGAATAATTTTAGCATTACCTTCCAT-AACACGACGTTC--AGCAAAGG 402 Query 142964 TAAAGGTACATGCGAAAGATACATAAAAACGAATAGCTTCTAGGGCGTTGA-TTACATGC 143022 ||| | ||| || ||| ||||| || ||||| ||||||| ||| |||| | |||| | Sbjct 403 CAAACGAACAGGCAAAACTGACATAGAAGCGAATCGCTTCTAAGGCATTGACTGACAT-C 461 Query 143023 AGGCAAAGATA 143033 | ||| | ||| Sbjct 462 ATGCACAAATA 472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547461668962960