Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_014467.1 Length=176788 Score E Sequences producing significant alignments: (Bits) Value seq449735 237 2e-57 seq506238 150 2e-31 seq509673 132 5e-26 seq508109 127 2e-24 seq351952 105 8e-18 seq522862 95.1 1e-14 seq128994 95.1 1e-14 seq450559 86.0 7e-12 >seq449735 Length=3187 Score = 237 bits (262), Expect = 2e-57 Identities = 435/633 (69%), Gaps = 12/633 (2%) Strand=Plus/Plus Query 41133 TAAACTGTCATTACCTACGCCTATTATGGCGGGTGTGCGTACTCCTACGCGTCAGTTCTC 41192 |||| | ||| |||||||||| |||||||| ||||| ||||| || || || ||||| Sbjct 24 TAAAATTTCACTACCTACGCCAATTATGGCAGGTGTTCGTACGCCAACACGCCAGTTTAG 83 Query 41193 CAGTTGTGTTGTAATCGAATCTGGTGATTCTCTGGGTTCTCTGAACGCTGTTACGTCCGC 41252 | ||||| |||| || | ||| || || | ||| | ||||| |||| || Sbjct 84 CTCGTGTGTATTAATAGAGTGTGGCGACAGCCTTGATTCAATTAACGCCACCTCGTCTGC 143 Query 41253 GATCGTGAAATATATCTCTCAACGTGCGGGTATCGGTGTCAACGCCGGACACATTCGCGC 41312 || || ||||| | || |||||||| || || || | ||||| || | |||||| || Sbjct 144 AATTGTTAAATACGTATCGCAACGTGCCGGCATTGGCATTAACGCAGGTCGCATTCGTGC 203 Query 41313 TATGGGTTCAAAAATCCGTGGTGGTGAAGCAGTCCATACAGGCGTTATCCCGTTCTGGAA 41372 ||||| | || || ||| ||||| |||||| || ||| || || | || Sbjct 204 ACTGGGTAGCCACATTCGCAATGGCGAAGCGTACCATACGGGTTGTATTCCTTTTTATAA 263 Query 41373 ACACATTCAGACGGCGGTTAAATCTTGTTCCCAGGGTGGCGTTCGTGGTGGTGCAGCAAC 41432 ||| |||| || ||||||||| ||||| || || || || ||||| || |||||||| Sbjct 264 GCACTTTCAAACAGCGGTTAAAAGCTGTTCGCAAGGCGGTGTACGTGGCGGCGCAGCAAC 323 Query 41433 CCTGTATTATCCGATCTGGCATCTTGAAGTTGAAAACCTGCTGGTTCTGAAAAATAACCG 41492 | ||| || ||| | |||||| | ||||| ||||||||| | || || ||||||||||| Sbjct 324 CTTGTTCTACCCGCTTTGGCATTTAGAAGTAGAAAACCTGTTAGTACTTAAAAATAACCG 383 Query 41493 TGGCGTTGAAGAAAACCGTATTCGTCACCTGGACTATGGCGTACAGCTTAACGATTTGAT 41552 || ||||| || ||||| | ||||| | || || ||||||||| |||| | | || Sbjct 384 CGGGGTTGATGACAACCGCGTGCGTCATTTAGATTACGGCGTACAGTTTAATAAACTAAT 443 Query 41553 GTATAAGCGTTTAATCAATAACGATTACATCACTCTGTTCAGCC---CTGACGTTGCGAA 41609 ||| ||||||||| || |||| ||||| || |||| |||| |||| | ||| | Sbjct 444 GTACTCGCGTTTAATTAAAGACGACTACATTACCTTGTTTAGCCCCTCTGATG-TGCCA- 501 Query 41610 TGATCGCCTCTATGACGCGTTCTATCAAGCGGATCAGACTGAGTTTGAAGAACTCTATAC 41669 |||| || || || || | | ||| | |||| |||||||| | || ||| Sbjct 502 ----GGCCTTTACGATGCATTTTTTGAAGACCA--AGAC-GAGTTTGACGCGCTTTATGT 554 Query 41670 CAGTCTGGAAAAAGACCCAGCGGTACGCAAGAAACGTATTAAAGCGGTAGATCTGTTCCA 41729 | ||| ||||| | | | || || ||||| |||||||| | || |||||| Sbjct 555 AAAATACGAACAAGACGAATCAATTCGTAAAAAACGCATTAAAGCTATTGAACTGTTCTC 614 Query 41730 GTTGCTTGTTCAGGAACGCGCACAGACCGGACG 41762 || ||| || ||||| ||| ||||| || Sbjct 615 AATGTTTGCGCAAGAACGTGCAAGTACCGGTCG 647 >seq506238 Length=275 Score = 150 bits (166), Expect = 2e-31 Identities = 137/173 (79%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 51307 GAAGGTGGACAACACTTAAACGTAAACGTGTTGCGCCGCGAAACTCTGGAAGATGCTGTG 51366 |||||||| ||||| |||||||| || ||||| || || ||||| ||||||||||||| Sbjct 221 GAAGGTGGTCAACATTTAAACGTGAATGTGTTACGTCGTGAAACATTGGAAGATGCTGTT 162 Query 51367 AAGCATCCAGAAAAATACCCACAGTTAACGATCCGTGTGTCCGGCTATGCAGTGCGTTTC 51426 || || || |||||||| ||||| ||||| || ||||| || || || ||||||||||| Sbjct 161 AAACACCCTGAAAAATATCCACAATTAACTATTCGTGTATCAGGTTACGCAGTGCGTTTT 102 Query 51427 AATTCACTGACTCCTGAACAACAGCGCGACGTTATCGCCCGAACCTTTACAGA 51479 || ||| | || || |||||||||| ||||| | | || || |||||||| Sbjct 101 AACTCATTAACACCAGAACAACAGCAAGACGTATTAACACGTACATTTACAGA 49 >seq509673 Length=441 Score = 132 bits (146), Expect = 5e-26 Identities = 161/218 (74%), Gaps = 1/218 (0%) Strand=Plus/Minus Query 41326 ATCCGTGGTGGTGAAGCAGTCCATACAGGCGTTATCCCGTTCTGGAAACACATTCAGACG 41385 || ||||| || ||||| ||||| || |||||| |||| |||| | || || Sbjct 439 ATTCGTGGCGGCGAAGCGCAGCATACGGGTTGTATCCCATTCTATAAACTGTTCCAAACT 380 Query 41386 GCGGTTAAATCTTGTTCCCAGGGTGGCGTTCGTGGTGGTGCAGCAACCCTGTATTATCCG 41445 || ||||||| || || || || ||||| ||||| |||||||| || ||| ||| || Sbjct 379 GCTGTTAAATGCTGCTCACAAGGCGGCGTCCGTGGCGGTGCAGCGACGTTGTTTTACCCA 320 Query 41446 ATCTGGCATCTTGAAGTTGAAAACCTGCTGGTTCTGAAAAATAACCGTGGCGTTGAAGAA 41505 | |||||| | |||||||| | |||| |||||||||||||| ||||| ||||| Sbjct 319 TTATGGCATTTAGAAGTTGAGTCATTATTGGTACTGAAAAATAACCGCGGCGTGGAAGAC 260 Query 41506 AACCGTATTCGTCACCTGGACTATGGCGTACAGCTTAA 41543 |||||| | ||||| |||| || ||||||||| |||| Sbjct 259 AACCGTGTCCGTCATATGGATTACGGCGTACAG-TTAA 223 >seq508109 Length=334 Score = 127 bits (140), Expect = 2e-24 Identities = 211/305 (69%), Gaps = 0/305 (0%) Strand=Plus/Minus Query 90860 CCGCGTCCCTTTTGTTTCAGCCCCAGGAACACAATCGCATTGACTTGTTTCAGTCGCGGA 90919 ||||| |||||||| |||| | ||||||||| ||||| || | | ||| || Sbjct 305 CCGCGACCCTTTTGCTTCAATGATAAGAACACAATAGCATTTACATTAGCTAATCGTGGG 246 Query 90920 TCATTGCGCACAGCATCAACAACGTTAAACGCATCATCATAGGTTTTAGAGCTAACCATG 90979 ||| | || ||| ||| || || ||||||| ||| || | || | ||| Sbjct 245 TCAGTTTTCATAGCTTCAGTTACAGTATACGCATCTTCAATAGTACGACCACTGATCATA 186 Query 90980 AAGTGAAGGTTAATTTGCTGTTGTCCTGCTTCTGCCAGGTTCGCTACCGAGTCGAAAGCG 91039 ||||| ||||| ||||||| ||| || || | | | ||| || ||| || || Sbjct 185 AAGTGTAGGTTGATTTGCTTTTGACCAGCAGCGGTTAAACGCGCAACACTGTCAAACGCT 126 Query 91040 ACATCGAAGCCAGCATGTTTATAAACCGATACCGCAACAGCCCCAGCAACAGCCGCTAAA 91099 ||||| || ||||| ||||||||||| ||||| |||| ||| |||||||| | ||||| Sbjct 125 ACATCAAAACCAGCGTGTTTATAAACTGATACAGCAATAGCACCAGCAACTGATGCTAAT 66 Query 91100 CGCGCTGCAACGTCTTTTGATACATCGGCAATGGTAAGGTTCGGCACAATGCCTTTAGAA 91159 || ||||| |||| ||| ||||| ||||| || || || || | ||| |||| ||| Sbjct 65 TTAGCAGCAACTTCTTCTGACACATCAGCAATTGTTAGATTTGGGATAATACCTTGTGAA 6 Query 91160 CGCGC 91164 || || Sbjct 5 CGAGC 1 >seq351952 Length=416 Score = 105 bits (116), Expect = 8e-18 Identities = 133/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 51307 GAAGGTGGACAACACTTAAACGTAAACGTGTTGCGCCGCGAAACTCTGGAAGATGCTGTG 51366 |||||||| |||||||||||||| || || || ||| |||| | ||||| || Sbjct 203 GAAGGTGGTCAACACTTAAACGTTAATGTAATGAACCGTGAAATGTTATTGGATGCAATG 144 Query 51367 AAGCATCCAGAAAAATACCCACAGTTAACGATCCGTGTGTCCGGCTATGCAGTGCGTTTC 51426 | ||||||| || || ||||| ||||| || ||||| || || || ||||| || || Sbjct 143 GAAAATCCAGATAAGTATCCACAATTAACAATTCGTGTATCGGGTTACGCAGTACGATTT 84 Query 51427 AATTCACTGACTCCTGAACAACAGCGCGACGTTATCGCCCGAACCTTTACAGAGAGTCTA 51486 || || | ||| | |||||| ||| || || ||| | || |||||||||| || ||| Sbjct 83 AACTCGTTAACTGCAGAACAAAAGCAAGATGTAATCACACGTACCTTTACAGCGACGCTA 24 Query 51487 TAA 51489 ||| Sbjct 23 TAA 21 >seq522862 Length=256 Score = 95.1 bits (104), Expect = 1e-14 Identities = 176/256 (69%), Gaps = 2/256 (1%) Strand=Plus/Plus Query 43522 TCGAACCTGCAATATCAAACCCTGTTGGATACCATTCAGGGGCGCGGCCCTAACCTGGCT 43581 || |||||| |||||||||| || || || | || ||||| || | |||||| |||| Sbjct 2 TCAAACCTGAAATATCAAACACTATTAGACTCGATACAGGGTCGTAGTCCTAACATGGCA 61 Query 43582 TTCCTCCCTATCGCTTCCGATGTCTC-GATGGAAACGTGGATCGAAACATGGGCGTTCAG 43640 || || || |||| ||| | || | | || || ||||||||||| ||| | ||||| Sbjct 62 TTACTTCCGATCGTATCCT-TACCTGAGTTAGAGACATGGATCGAAACCTGGTCCTTCAG 120 Query 43641 TGAAACAATCCATAGCCGCAGTTATACGCACATTCAGCGCAACCTACACATCGACCCGTC 43700 ||| || ||||| |||| || || || || |||| || ||| || | |||||||| Sbjct 121 TGAGACTATCCACAGCCAGAGCTACACACATATTCTTCGTAACATATTCGATGACCCGTC 180 Query 43701 AAAAGAGTTCGATAAAATTCTGCGCAACGAAGCGATCATGAAACGTTCGGCTTCCATGAC 43760 ||| | | ||| | ||| | |||| | | ||| |||||| | || | || | Sbjct 181 TGAAGTGCTAGATGATATTGTCAGCAATGTTGAGATACAGAAACGAGCTGCACCAATCGC 240 Query 43761 AAAATACTACGATGAC 43776 || || || |||||| Sbjct 241 AAGCTATTATGATGAC 256 >seq128994 Length=861 Score = 95.1 bits (104), Expect = 1e-14 Identities = 181/265 (68%), Gaps = 4/265 (2%) Strand=Plus/Minus Query 43933 GTCAACGCTCTGGAAGCGATCCGCTTCTACGTGTCGTTTACCTTCACGTTCAACTTTGCC 43992 ||||| || | |||||||| |||||||| || ||| ||| |||| |||||| Sbjct 454 GTCAATGCCTTAGAAGCGATTCGCTTCTATGTCAGTTTTGCCTGTTCGTTTGCCTTTGCT 395 Query 43993 GAACAAGGTAAGATGGAAGGTAACGCGAAGATCATGCGTCTGATTGCCCGTGATGAAGCA 44052 |||| || ||||||||||| || || || || || | ||||||||||||||||| Sbjct 394 GAACGTCGTGTTATGGAAGGTAATGCTAAAATTATTCGCTTAATTGCCCGTGATGAAGCC 335 Query 44053 CTTCATCAGAAAGGTACTCAAAGCAAGATCCGACTCTG--GCAAATGGGTAAAGACGACC 44110 | || | || |||| ||| || | ||||| ||| ||||||||||||| Sbjct 334 TTACACCTCAATAGTACACAA--CACATTTTAGCTCTGATGCAGGGTGGTAAAGACGACC 277 Query 44111 CAGAAATGGCAGAAATCGCATTCCAGTATGAAGAGGAAGCGACACAGATTTTCCTTGAAG 44170 ||||||||| |||||| || ||| | | | |||||| | | ||| | ||| Sbjct 276 CAGAAATGGGAGAAATTGCTGCTGAGTGTAAGCAAGAAGCGTATGACTTATTCGTCAAAG 217 Query 44171 TATACGAACAGGAAAAAGAATGGGC 44195 ||||| |||||||||||||| Sbjct 216 CGGCGGAACAAGAAAAAGAATGGGC 192 >seq450559 Length=633 Score = 86.0 bits (94), Expect = 7e-12 Identities = 75/91 (82%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 155251 ACCGAAAAAGA-TGTATTCGATGCGTTCCAGTCCTATGAGTATGAAGTGAATACCCTGCA 155309 ||||||||||| ||| | || || |||||||| ||| ||||||||||||||| |||| Sbjct 296 ACCGAAAAAGAGTGTCAT-GACGCATTCCAGTCACTTGAATATGAAGTGAATACCTTGCA 354 Query 155310 TACTGCCAACGGGCAAACCCCGTTTGTTACC 155340 ||| || || || ||||| |||||||||||| Sbjct 355 TACCGCTAATGGCCAAACACCGTTTGTTACC 385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561878342900160