Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_014636.1 Length=225268 Score E Sequences producing significant alignments: (Bits) Value seq449735 174 2e-38 seq475275 170 3e-37 seq450559 125 1e-23 seq250551 116 5e-21 seq507286 114 2e-20 seq511551 102 1e-16 seq509355 100 4e-16 seq516580 86.0 9e-12 seq128994 86.0 9e-12 >seq449735 Length=3187 Score = 174 bits (192), Expect = 2e-38 Identities = 315/457 (69%), Gaps = 4/457 (1%) Strand=Plus/Minus Query 129013 GGACTGAACAAGGTAATATAGTCGTCGTTTTTCAACCGTTCTAACATCAGCTTATTGATT 129072 || || ||||||||||| |||||||| || | || || |||| || ||||| | Sbjct 488 GGGCTAAACAAGGTAATGTAGTCGTCTTTAATTAAACGCGAGTACATTAGTTTATTAAAC 429 Query 129073 TGGATACCGTAGTCAAGATGTCGGATTCGGTTTTCTTCAACGCCCTTGTTATTCTTGAGC 129132 || | ||||| || | ||| || | ||||| || ||||| || |||||| || || Sbjct 428 TGTACGCCGTAATCTAAATGACGCACGCGGTTGTCATCAACCCCGCGGTTATTTTTAAGT 369 Query 129133 ACAAGGATTTTTTCAACTTCGAGGTGCCACATTGGGTAATATAGAGTTGCGGCACCGCCG 129192 || | | ||||| ||||| | ||||| | ||||| | | ||||| || ||||| Sbjct 368 ACTAACAGGTTTTCTACTTCTAAATGCCAAAGCGGGTAGAACAAGGTTGCTGCGCCGCCA 309 Query 129193 CGAACACCACCCTGTGAACAGCTCTTTACCGCAGTCTGGAAGTATTTCCAAAATGGGATA 129252 || ||||| || || |||||||| || ||||| || || |||| || |||| || ||| Sbjct 308 CGTACACCGCCTTGCGAACAGCTTTTAACCGCTGTTTGAAAGTGCTTATAAAAAGGAATA 249 Query 129253 ATACCGGTATGTCGCACTTCACCGCTACGAATGCGAGATCCCTCGGCACGAATCGCACCG 129312 ||| ||||| | |||| || | |||||| | ||| |||||||| ||| Sbjct 248 CAACCCGTATGGTACGCTTCGCCATTGCGAATGTGGCTACCCAGTGCACGAATGCGACCT 189 Query 129313 CCGTTGATGCCGATACCAGCGCGTTTGCTGATA--TAGTCAACGATAGAACTAGCGGTAG 129370 |||| ||||| || || || || |||| |||| || | ||| || | | | ||| | Sbjct 188 GCGTTAATGCCAATGCCGGCACG-TTGC-GATACGTATTTAACAATTGCAGACGAGGTGG 131 Query 129371 CGTTGATGCTATCCAGTTCGTCTCCACATTCGATCTTGACACAAGAGCTAAACTGCCGAG 129430 |||| || ||| || ||| ||||| || || ||||| ||||||||||| || | Sbjct 130 CGTTAATTGAATCAAGGCTGTCGCCACACTCTATTAATACACACGAGCTAAACTGGCGTG 71 Query 129431 TCGGGGTGCGAACACCTGCGAGAATCGGAGTTGGCAG 129467 | || || ||||||||||| | ||| || || || || Sbjct 70 TTGGCGTACGAACACCTGCCATAATTGGCGTAGGTAG 34 Score = 127 bits (140), Expect = 3e-24 Identities = 192/270 (71%), Gaps = 10/270 (4%) Strand=Plus/Minus Query 126933 GCCCATTCTTTTTCTTGTTCGGCAGCGTCCAGAAAAATCTGAACAGCCTTTGACTCAAGA 126992 ||||||||||||||||| || |||||||||| ||| || | || || || | | | | Sbjct 2628 GCCCATTCTTTTTCTTGCTCTGCAGCGTCCACAAACATTTTAATTGC-TTCGTCGCGGCA 2570 Query 126993 C-GTTTAGCAATATCAACCATTTCTGGGTCATCTTCGCCGTTTTGCCAAGTGCGAATTTG 127051 | | |||| | |||||||||| || |||| |||| |||| | | |||| Sbjct 2569 CTGCGCGGCAACAATCGCCATTTCTGGATCGTCTTTACCGTCTTGCATAAT----ATTTA 2514 Query 127052 ATA----CTGGGTGCCTTTGAGGTGCAATTGTTCATCACGCGCAATCAGTTTCATGATCT 127107 | | ||| ||||| | || | |||||| || ||||| || || || || | Sbjct 2513 AAATATGCTGAGTGCCAGATAAATGTAGCGCTTCATCGCGGGCAATAAGCTTGATTATTT 2454 Query 127108 TAGCGTTGCCTTCCATCAAACCGCGTTCGGCAAACGAGAAGGTGCAGGCGAAGCTTACAT 127167 ||||||| ||||||||||| | || || ||||||| || | |||||| ||||| |||| Sbjct 2453 TAGCGTTACCTTCCATCAATTCACGCTCAGCAAACGCAAACGAGCAGGCAAAGCTGACAT 2394 Query 127168 AAAAACGAATCGCTTCCAAAGCGTTTACCG 127197 |||||||||||||||| ||| ||||||| Sbjct 2393 AAAAACGAATCGCTTCTAAAATATTTACCG 2364 >seq475275 Length=1050 Score = 170 bits (188), Expect = 3e-37 Identities = 247/348 (71%), Gaps = 3/348 (1%) Strand=Plus/Plus Query 124646 TTCGTCAATGCGATTAATTGTGTTGCCACCATAAATGTGACTTGCAACCTGTGCAATGAT 124705 |||||| || || ||||| ||| | ||||||||||| ||||| || ||||| ||||| || Sbjct 1 TTCGTCGATACGGTTAATCGTGGTACCACCATAAATATGACTCGCGACCTGAGCAATAAT 60 Query 124706 TTGAGCAGTAACAGCCGCAGCGGTAGCGATGCTCTTAGGAGTTTCGATCTGTGCATTACC 124765 ||| || |||||||| | ||| || | || |||||| | ||| || | |||||||| Sbjct 61 TTGCGCCGTAACAGCAGTAGCAGTTGAAATAGACTTAGGCGGTTCTATTTCAGCATTACC 120 Query 124766 CATGCGGAACCCACGCTCTAACATGCCGTTGAGATCAATCAACATGCAGTTAAACATTGG 124825 ||| || ||| | || ||||||| | |||||| |||||||| |||||||| || Sbjct 121 CATTTTAAAACCATGAGTTAGCATGCCGGCCAAATCAATTAACATGCAATTAAACATCGG 180 Query 124826 GAAGAACGGAGAGTAATCAAGATCATGGAAGTGAATAAAACCAGCTTCGTG---TGCTTG 124882 ||| || || | ||||| | || || ||||||| || ||| || ||| Sbjct 181 GAAAAAAGGTGCATAATCTAAGTCGTGATAGTGAATTTCGCCTTTTTCATGGGCGGCTAC 240 Query 124883 CAGAACTTCGGTCGGCAGATAGTGCTTTGCAAAGTGCTTGCTTACTATGCCCGCGACTAA 124942 || | ||| | | | | || | || ||| | ||||| || || ||||| | ||| Sbjct 241 CACATCTTTTGGCAGTAAATGGGTTTTGGCATAATGCTTAGCCACAATACCCGCTAATAA 300 Query 124943 ATCGCGTTGTGTCGGAATAACTTTTGCATCTTTGTTTGCATTCTCATT 124990 ||| || || |||||||| ||||| |||||||| || ||||| ||||| Sbjct 301 ATCACGCTGGGTCGGAATGACTTTGGCATCTTTATTGGCATTTTCATT 348 >seq450559 Length=633 Score = 125 bits (138), Expect = 1e-23 Identities = 140/187 (75%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 124645 CTTCGTCAATGCGATTAATTGTGTTGCCACCATAAATGTGACTTGCAACCTGTGCAATGA 124704 ||||||| || || ||||| ||| | ||||||||||| || || || ||||| ||||| | Sbjct 200 CTTCGTCGATACGGTTAATCGTGGTACCACCATAAATATGGCTCGCTACCTGAGCAATAA 141 Query 124705 TTTGAGCAGTAACAGCCGCAGCGGTAGCGATGCTCTTAGGAGTTTCGATCTGTGCATTAC 124764 |||| || |||||||| | || || | || |||||| | ||| || | ||||||| Sbjct 140 TTTGCGCCGTAACAGCAGTGGCAGTTGATATAGACTTAGGCGGTTCTATTTCAGCATTAC 81 Query 124765 CCATGCGGAACCCACGCTCTAACATGCCGTTGAGATCAATCAACATGCAGTTAAACATTG 124824 |||| || ||| | |||||||||| | |||||| | ||||||||||||||| | Sbjct 80 CCATTTTAAAACCATGAGTTAACATGCCGGCCAAATCAATTAGCATGCAGTTAAACATCG 21 Query 124825 GGAAGAA 124831 |||| || Sbjct 20 GGAAAAA 14 >seq250551 Length=853 Score = 116 bits (128), Expect = 5e-21 Identities = 285/423 (67%), Gaps = 8/423 (2%) Strand=Plus/Minus Query 123214 ATTACATATGTTTGACACGACGCTGGACTTCGTCCTGTTTG-CCGACGTTAAATGCGCGA 123272 |||| | ||| || || | |||| ||||| | || || |||| |||||||| || Sbjct 814 ATTATAAATGCTTCACTCTGCGCTTAACTTCTTGTTGCTTAACCGAAGTTAAATGGTCGC 755 Query 123273 GATCCAGGGTTACCCAAATACCCACAGA-CGCGACGAATAACGTTCA-TCTTACGGTCAT 123330 | | ||| | || ||||| || || | |||||||| |||| || || | | | Sbjct 754 GCATCTGGGCTGCCTAAATAACCGCACAACGCGACGAGTAACAGACACTCGGCTTGGC-T 696 Query 123331 CGTGATTGCCACACTTCGGACATTCGTATCCTTTAGAAGTAGCGGTAAACTCACCGTTAA 123390 | ||||| ||||| || || || | | || ||| ||| |||||||||| ||| Sbjct 695 CATGATTACCACATTTAGGGCACACAAACCCCTTACTGGTACAATTAAACTCACCAATAA 636 Query 123391 ATCCACATTCAAAACAAACATCAACTGGAGTGTTTGTTCCATAGTACGGAGTGTTCCGAT 123450 | || || || |||| |||||| ||||| || || || || || || | || Sbjct 635 AACCGCAATCGTAACACTCATCAATGGGAGTATTGGTGCCGTAATATGGCACTCGGCTAT 576 Query 123451 AAGCATAATCCCAAACTGCTTCGAGTGCTTCCAGATTGTGTTTCATATTCGGATATTCAC 123510 || ||||||||||| |||||| ||||| | |||||| | ||| || |||||||| | Sbjct 575 AACTGTAATCCCAAACGTTTTCGAGCGCTTCAATATTGTGCTGCATGTTGGGATATTCGC 516 Query 123511 CGTATGAAATGAAACCACCGGT-ACTA-AGCGGAATGAATTGCTTTTCAAAATCGATCTT 123568 |||| |||| || || || | | | || | || | | | ||||||||| ||||| Sbjct 515 CGTAACAAATAAACCCGCCATTGGCGATGGCTGGAT--AAGGTTGTTCAAAATCAATCTT 458 Query 123569 GTCATACGGATTTGTGTTCATATCCACAGACAGATGGAAGCTGTTTGTGTAATAGTCTTT 123628 ||| | |||||| ||| | || ||| | |||||||| || ||||||||| |||| Sbjct 457 ATCAAAAGGATTTACTTTCTTTTCAACATCTAAGTGGAAGCTATTGGTGTAATAGCCTTT 398 Query 123629 ATC 123631 || Sbjct 397 GTC 395 >seq507286 Length=366 Score = 114 bits (126), Expect = 2e-20 Identities = 152/209 (73%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 124785 AACATGCCGTTGAGATCAATCAACATGCAGTTAAACATTGGGAAGAACGGAGAGTAATCA 124844 |||||||| | |||||||| ||| ||||||||||| ||||| ||||| || ||||| Sbjct 9 AACATGCCAGCCAAATCAATCAGCATACAGTTAAACATAGGGAAAAACGGCGAATAATCT 68 Query 124845 AGATCATGGAAGTGAATAAAACCAGCTTCGTGTGCTTGCAGAACTTCGGTCGGCAGATAG 124904 | || ||| |||| || ||| ||||| || || | || || | |||| | Sbjct 69 AAGTCGTGGTAGTGGATCTCACCCGCTTCATGGGCAGCAACCACATCCTTTGGCAAAATA 128 Query 124905 TG-CTTT--GCAAAGTGCTTGCTTACTATGCCCGCGACTAAATCGCGTTGTGTCGGAATA 124961 || |||| ||| | || || ||||||||||||| |||||| || || ||||| || Sbjct 129 TGACTTTTGGCATAATGTTTTGCCACTATGCCCGCGAGTAAATCCCGCTGAGTCGGGATC 188 Query 124962 ACTTTTGCATCTTTGTTTGCATTCTCATT 124990 ||||| | |||||| || ||||||||||| Sbjct 189 ACTTTCGAATCTTTATTGGCATTCTCATT 217 >seq511551 Length=634 Score = 102 bits (112), Expect = 1e-16 Identities = 299/458 (65%), Gaps = 12/458 (3%) Strand=Plus/Minus Query 124083 AGTGCGATACGCGGCAAGTTCAGAGTAACAACACCGAGATTGTTTCTGCCTTCATGAACT 124142 ||||| | ||| || | ||| | | || ||||| | ||||| | || ||| ||| Sbjct 501 AGTGCAACACGAGGTAGGTTTAAGCTTACCACACCTAAGTTGTTACGTCCATCAAACACT 442 Query 124143 TCATTACCGGTTTCGTCTTCCCAGCGATGCAAGAAA-CTACGGCATCCCATAGGGAACTT 124201 || ||||| | ||||| | | | |||| || || | ||| ||||| ||| Sbjct 441 TCCTTACCAGAAGAGTCTTTATA-CTCTCCAAGGAAGCTCCTGCAGCCCATGCTTGCCTT 383 Query 124202 AAAGCTACCAGTCACTTCTACCACTTTATCATAACTCAAGATGTCTGGATACATACGCTT 124261 ||| | |||||| || ||||| | ||||| || | | || || || ||||||||||| Sbjct 382 AAAACCACCAGTAACCTCTACAATCTTATCGTAGTTGATAATATCAGGGTACATACGCTT 323 Query 124262 GGCAGCGCACTCCAGTGCCATCTGTTTGATACGATACAGAGGATCAGTTGGTTTCAAGTT 124321 || ||||| || || | |||||| ||| ||| || || |||| ||||| Sbjct 322 ACTGGCACACTCTAGAGCTAACTGTTTAATATTATAGTTTGGGTCTTCCTGTTTAAAGTT 263 Query 124322 GTGTCCGTCTTTCAGCGCGAAAACAAGTTTCGGGAAAACGGGAGTAATACCTTCTTTG-- 124379 | |||||||| | | | | ||| || ||||| || | || | |||||| Sbjct 262 GACACCGTCTTTAATAGTTAGGATAAGCTTAGGGAATACCGCTGT-----CCTCTTTGAT 208 Query 124380 ---CCAAGACCTTTCATCCGAACTTTCAGAATTGCTTCCTGAATGAGTTCGGATTCCCAG 124436 || | ||||| || || || | || || | || |||||| || | || ||||| Sbjct 207 GCACCTAAGCCTTTAATACGCACCTCAAGGATGGATTTCTGAATTAGCTTAGACTCCCAA 148 Query 124437 CTAGTGCCTAGTCCAAACCCGAAAGTGCAGAATGGAGTTTGACCATTTGCCGAGTGCAGA 124496 | ||| |||| ||||| || | || || || || |||| |||||||| | ||| | Sbjct 147 CAAGTACCTAAACCAAAACCTACCGTACAAAAGGGGCTTTGTCCATTTGCTGTGTGTAAG 88 Query 124497 GTGTTTACCTCATACTCTAGGCTTTGCATTGCATCATA 124534 ||||| | || ||||| || ||||| | |||||||| Sbjct 87 GTGTTAATTTCGTACTCAAGACTTTGGAAAGCATCATA 50 >seq509355 Length=474 Score = 100 bits (110), Expect = 4e-16 Identities = 66/72 (92%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 193689 GCGGGAGGTGGATTTGAACCACCGACCTTTAGCTTATGAGGCTAACGAGATT-CCAGACT 193747 ||||||| ||||||||||||| ||||||||||||||||||||||||||| || ||||||| Sbjct 362 GCGGGAGCTGGATTTGAACCAGCGACCTTTAGCTTATGAGGCTAACGAGCTTACCAGACT 303 Query 193748 TCTCCATCCCGC 193759 ||| ||||||| Sbjct 302 GCTCTATCCCGC 291 >seq516580 Length=413 Score = 86.0 bits (94), Expect = 9e-12 Identities = 152/221 (69%), Gaps = 3/221 (1%) Strand=Plus/Plus Query 124074 TTTGCGTCGAGTGCGATACGCGGCAAGTTCAGAGTAACAACACCGAGATTGTTTCTGCCT 124133 ||||| | ||| || | ||| || ||||| | | |||||||| | || || | || Sbjct 75 TTTGCTTTGAGCGCTAAACGAGGTAAGTTGATTGATACAACACCCAAGTTATTACGTCCA 134 Query 124134 TCATGAACTTCATTACCGGTTTC---GTCTTCCCAGCGATGCAAGAAACTACGGCATCCC 124190 |||| ||| | ||| ||| | |||| ||| || | ||| ||| || ||| Sbjct 135 TCATATACTGGTTCACCTGTTACTGGGTCTGACCATTCGTGTAGGAATGAACGACAGCCC 194 Query 124191 ATAGGGAACTTAAAGCTACCAGTCACTTCTACCACTTTATCATAACTCAAGATGTCTGGA 124250 || ||| |||| || | |||||| ||| || | || || || |||| || |||||| Sbjct 195 ATTGGGTACTTGAACCCACCAGTAGTTTCAACTAACTTGTCGTAGTTCAAAATATCTGGA 254 Query 124251 TACATACGCTTGGCAGCGCACTCCAGTGCCATCTGTTTGAT 124291 ||||||||||||| ||| || || | ||| | ||||||||| Sbjct 255 TACATACGCTTGGTAGCACATTCAACTGCTAACTGTTTGAT 295 >seq128994 Length=861 Score = 86.0 bits (94), Expect = 9e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 126998 AGCAATATCAACCATTTCTGGGTCATCTTCGCCGTTTTGCCA-AGTGCGAATTTGATACT 127056 |||||| || ||||||||||||| |||| || ||| || || || || | | Sbjct 257 AGCAATTTCTCCCATTTCTGGGTCGTCTTTACCACCCTGCATCAGAGCTAAAATG-TGTT 315 Query 127057 GGGTGCCTTTGAGGTGCAATTGTTCATCACGCGCAATCAGTTTCATGATCTTAGCGTTGC 127116 | || | |||||||| || ||||||||| ||||| | || || ||||| || | Sbjct 316 GTGTACTATTGAGGTGTAAGGCTTCATCACGGGCAATTAAGCGAATAATTTTAGCATTAC 375 Query 127117 CTTCCATCAAACCGCGTTCGGCAAACGAGAAGGTGCAGGCGAAGCTTACATAAAAACGAA 127176 ||||||| | || ||||| ||||| | || | ||||| || || ||||| || |||| Sbjct 376 CTTCCATAACACGACGTTCAGCAAAGGCAAACGAACAGGCAAAACTGACATAGAAGCGAA 435 Query 127177 TCGCTTCCAAAGCGTTTAC 127195 ||||||| || || || || Sbjct 436 TCGCTTCTAAGGCATTGAC 454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 715995289421760