Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq300954 140 1e-27 seq518414 132 2e-25 seq340775 123 1e-22 seq79730 114 5e-20 seq508743 104 9e-17 seq500326 96.9 1e-14 seq509421 95.1 5e-14 seq413528 91.5 6e-13 seq280032 91.5 6e-13 seq137853 91.5 6e-13 seq375244 87.8 7e-12 seq152719 86.0 2e-11 >seq300954 Length=1016 Score = 140 bits (154), Expect = 1e-27 Identities = 241/350 (69%), Gaps = 14/350 (4%) Strand=Plus/Plus Query 451274 AAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACT 451333 ||||||||| ||||||||||| | ||| | ||| ||| || || ||||| ||||| Sbjct 645 AAAATGAAAAAAACAGCAGAAGATTATCTAGGTGAAGAAGTGACAGAAGCAGTCATTACC 704 Query 451334 GTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCT 451393 || || ||||| || || ||| |||| || |||||||| |||||||| || | ||| || Sbjct 705 GTACCTGCTTACTTTAACGATTCACAGCGCCAAGCAACGAAAGATGCTGGTCGTATCGCA 764 Query 451394 GGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTA 451453 |||| || || ||||| || ||||| || || ||||| || || || || | Sbjct 765 GGTTAAA--------CGTATTATCAACGAACCAACGGCTGCTGCCCTTGCTTACGG-CAT 815 Query 451454 GGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACT 451513 ||| |||| ||| || || ||| || || | ||||| ||||| || || Sbjct 816 GGA-----AAAAAAAAAAGGCGACAAAGTCGTTGCGGTTTACGATTTAGGTGGTGGTACA 870 Query 451514 CATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGT 451573 |||| |||| | ||| | | | ||| || || ||||||||| | | || || || Sbjct 871 TTCGATATTTCTATCCTTGAATTAGGAGACGGAGTTTTTGAAGTATTGTCTACAAACGGA 930 Query 451574 GATACTCATCTAGGAGGTGAAGATATTGATAATGCAATTGTGGAATGGTT 451623 ||||| || |||| || || ||| |||| ||| |||| | || ||||| Sbjct 931 GATACACACTTAGGTGGAGATGATTTTGACCATGAAATTATTGACTGGTT 980 >seq518414 Length=499 Score = 132 bits (146), Expect = 2e-25 Identities = 223/316 (71%), Gaps = 10/316 (3%) Strand=Plus/Plus Query 63830 CAGTAAAT--TGTTTAGTATCCTTATCACTCCACCAATTATTTAAATTACCATCCGCATC 63887 |||||||| |||| | ||| | ||| |||||||||| ||| ||| ||||| || | Sbjct 123 CAGTAAATAATGTTAA--ATCTTCGTCAGACCACCAATTAATTAGATTTCCATCTGCGTT 180 Query 63888 AAATCTTTTTCCTTGATCATCAAACCCATGAGTGATTTCATGAGCTATAACTACTCCAAT 63947 ||| | ||| ||||||||| ||||||| ||||| || | || || ||||||| Sbjct 181 AAAGCGCGATCCGGAATCATCAAATCCATGAGAAATTTCGTGTCCAATTACAGCTCCAAT 240 Query 63948 TCCTCCATAATTTTGTGCA--ATCGTATAATCTAAACTaaaaaaaGGTGGTTGTAAAATA 64005 ||| ||||||||| || |||| | | || | |||| || ||||| |||||| Sbjct 241 TCCACCATAATTTACAGCTTCATCGGCT--TGATAATTGTAAAATGGCGGTTGCAAAATA 298 Query 64006 GCAGCTGGAAATACAATTTCATTTAATAAAGGATGATAATAAGCATTTACTTGGTGTGGC 64065 || |||||||| ||||||||||| | |||||| ||||| ||||||||| || || Sbjct 299 GCTGCTGGAAAGACAATTTCATTATAAGAAGGATTGTAATATGCATTTACTGTTTGAGGA 358 Query 64066 AACATTTCCCATTTTTTAGTATCAGTAGGTTGATATAATTCTTTAAT-TTCATCATAAAA 64124 |||| ||||| | |||| ||||| || ||| |||| ||| ||| | ||||| Sbjct 359 GACATAAACCATTCGTCTTTATCTACAGGTTTATTTAAGTCTTCAATATTCTTTTTAAAA 418 Query 64125 CCACCATTCAGAAATT 64140 | ||||| | |||| Sbjct 419 -CTCCATTTGGCAATT 433 >seq340775 Length=450 Score = 123 bits (136), Expect = 1e-22 Identities = 133/176 (76%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 451274 AAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACT 451333 |||||||| |||| || ||| | | | | ||| | |||||||| ||||| |||||| Sbjct 223 AAAATGAAGAAAACGGCTGAAGACTTTTTAGGTGAAGCTGTTACTGAAGCAGTTATTACT 164 Query 451334 GTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCT 451393 ||||| || || || || ||| |||| || ||||| ||||||||||| || | |||||| Sbjct 163 GTTCCGGCATACTTTAACGATTCACAGCGTCAAGCTACTAAAGATGCTGGTCGTATTGCG 104 Query 451394 GGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGG 451449 ||| | ||||| || ||||| || ||||| || ||||| || ||||| ||||| Sbjct 103 GGTCTTGATGTTAAGCGTATTATCAACGAACCAACGGCAGCGGCACTAGCTTATGG 48 >seq79730 Length=2051 Score = 114 bits (126), Expect = 5e-20 Identities = 277/417 (66%), Gaps = 3/417 (1%) Strand=Plus/Minus Query 451190 AAAGGAAAGCCCTATATTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAA 451249 || ||||||||| | |||| || | |||||||||||||| ||| | || || || Sbjct 1718 AACGGAAAGCCCAAAGTTCAGGTGGAGTATAAAGGTGAAACCAAAGCCTTCTACCCCGAG 1659 Query 451250 GAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCT 451309 ||||| || || ||||| | ||||||||| || | ||| || || | || Sbjct 1658 GAAATCTCGTCAATGGTCTTGGTTAAAATGAAGGAGATAGCCGAGGCCTACCTGGGACAA 1599 Query 451310 CCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCA 451369 || | ||||||| || || || || ||||||||||||||| | || ||||||| Sbjct 1598 AAGGTCTCAAATGCAGTCATCACAGTGCCAGCTTATTTCAATGATTCTCAGAGGCAAGCC 1539 Query 451370 ACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACA 451429 ||||| ||||| ||| || ||||| | |||||||| | || || || || || ||| Sbjct 1538 ACTAAGGATGCTGGAGTGATCTCTGGTCTGAATGTTCTGAGGATCATCAACGAGCCCACA 1479 Query 451430 GCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTA 451489 ||||| || | || || || || ||| || | | ||| || ||| || | | Sbjct 1478 GCAGCAGCGATTGCCTACGG-CTTGGATAA--AGGAAAAAGAGGAGAGCGCAACGTGCTC 1422 Query 451490 GTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTA 451549 | |||||| | |||||||| || || || | || | ||||| ||||| | Sbjct 1421 ATCTTTGATCTCGGTGGAGGCACCTTCGACGTGTCCATCCTGACCATTGAGGATGGCATC 1362 Query 451550 TTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAAT 451606 ||||| ||||| || || || || || || || || || || || |||| ||| Sbjct 1361 TTTGAGGTAAAAGCCACTGCAGGAGACACACACCTTGGTGGAGAGGACTTTGACAAT 1305 >seq508743 Length=320 Score = 104 bits (114), Expect = 9e-17 Identities = 128/172 (74%), Gaps = 6/172 (3%) Strand=Plus/Plus Query 63908 CAAACCCATGAGTGATTTCATGAGCTATAACTACTCCAATTCCTCCATAATTTTGTGCAA 63967 |||| || |||| |||||| || | |||||| |||||||||| || |||||| || Sbjct 1 CAAAACCGTGAGAGATTTCGTGTCCAATAACTGCTCCAATTCCACCGTAATTTACAGCT- 59 Query 63968 TCGTATAATCTA---AACTaaaaaaaGGTGGTTGTAAAATAGCAGCTGGAAATACAATTT 64024 || || | || || | ||||||||||||| || || || |||||||||||||| | Sbjct 60 TC--ATCAGCTTGATAATTGTAAAAAGGTGGTTGCAAGATTGCCGCTGGAAATACAATCT 117 Query 64025 CATTTAATAAAGGATGATAATAAGCATTTACTTGGTGTGGCAACATTTCCCA 64076 |||| ||| |||||| | |||| || ||||| ||||| ||||| |||| Sbjct 118 CATTAAATGAAGGATTAAAATACGCGTTTACCGTTTGTGGAGACATTCCCCA 169 >seq500326 Length=1040 Score = 96.9 bits (106), Expect = 1e-14 Identities = 307/470 (65%), Gaps = 27/470 (6%) Strand=Plus/Plus Query 451892 ATTGATGAAATTGTGCTTGTAGGAGGTTCTACACGAATTCCTAAAATTCAAGAT-ATGTT 451950 ||||| ||| || | | ||||| || |||||||| || || | |||| || | ||| Sbjct 273 ATTGACGAAGTTATCTTAGTAGGTGGATCTACACGTATGCCAAGAATTGCTGAAGAAGTT 332 Query 451951 GTCTTCTTATTTTGGAGGAAAACAACTATGTAAGAGCGTAAATCCTGATGAAGCTGTTGC 452010 | || ||| |||||| ||| || || | || || ||||| |||| ||||| Sbjct 333 GAAAAATTCTTT----GGAAAAAAACCATCAAAAGGAGTTAACCCTGACGAAGTAGTTGC 388 Query 452011 ATATGGTGCTGCAGTTCAAGCAGCTATTCTAACAGGTTCAGATGATGAAAAATTAGGAGA 452070 | ||| || || |||||| | | || ||||| |||| |||| || Sbjct 389 AATTGGAGCAGCTATTCAAGGTGGAGTACT------TTCAGGAGATGTAAAA------GA 436 Query 452071 TATTCTGTTAGTAGATGTAACACCTCTATCTCTTGGAGTTGAAACAGCTGGTGGAATGAT 452130 | | ||||| | || || |||||| ||||| | ||| | ||||| |||||||| || Sbjct 437 TGTATTGTTACTTGACGTTACACCTTTATCTTTAGGAATCGAAACTATGGGTGGAATTAT 496 Query 452131 GACTAATTTAATTAAACGAGGAACTTCTATTCCTTGTAAAAAGAGTCAAACATTTAGTAC 452190 ||||| |||||| || ||| |||| || |||||| |||| || ||| Sbjct 497 GACTATCTTAATTGAAGCTAATACTACTATCCCAACTAAAAAATCTCAAGTTTTCTCTAC 556 Query 452191 AGCAAGTGATAACCAACCAGGTGTAACTATTCAAGTGTTTGAAGGAGAACGTGCAATGAC 452250 ||| ||| ||||| ||| || || || || |||||||| | |||||| | Sbjct 557 AGCTGCAGATTCTCAACCTACTGTTGAAATACACGTTCTTCAAGGAGAAAGAGCAATGGC 616 Query 452251 ACGAGATAATAATAAACTA--GGAGAATTTACTCTTTCAAAC---ATTCCTCCTATGCCA 452305 ||||| || ||||| ||| |||| ||| | || ||||| || ||| Sbjct 617 TGCTGATAACAA--AACTATCGGACGTTTTAA-CTT--AGACGGTATTCCACCAGCACCA 671 Query 452306 AGGGGAACTCCTCAAATTGAAATTACCTATGATGTTGATGCAAATGGTAT 452355 || ||| |||||||||||| || | | |||| |||||||||||||||| Sbjct 672 AGAGGAGTTCCTCAAATTGAGGTTTCTTTTGATATTGATGCAAATGGTAT 721 >seq509421 Length=352 Score = 95.1 bits (104), Expect = 5e-14 Identities = 151/215 (70%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 63852 ATCACTCCACCAATTATTTAAATTACCATCCGCATCAAATCTTTTTCCTTGATCATCAAA 63911 |||| ||||||||||| | |||| | ||||| | || |||||||||||||| Sbjct 119 ATCAGTCCACCAATTACGCTGAATACCGTTGGCATCTGACTTTGACCCTTGATCATCAAA 178 Query 63912 CCCATGAGTGATTTCATGAGCTATAACTACTCCAATTCCTCCATAATTT--TGTGCAATC 63969 ||||| ||||||||| |||| ||| | || || | || |||||| || | ||| Sbjct 179 ACCATGGCCCATTTCATGACCTATTACTGCACCTATAGCGCCGTAATTTACTGCGGCATC 238 Query 63970 GTATAATCTAAACTaaaaaaaGGTGGTTGTAAAATAGCAGCTGGAAATACAATTTCATTT 64029 | || | ||||| || ||||||||||| || || ||||| ||||||||||| Sbjct 239 G--GCATTGGGATCGAAAAATGGCGGTTGTAAAATCGCGGCCGGAAAAACAATTTCATTA 296 Query 64030 AATAAAGGATGATAATAAGCATTTACTTGGTGTGG 64064 ||| || | ||||||||||| || | ||||| Sbjct 297 AATGAACTGTTGTAATAAGCATTAACGCGTTGTGG 331 >seq413528 Length=500 Score = 91.5 bits (100), Expect = 6e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 451320 ATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATG 451379 ||||||| || || ||||| |||||||||||||| | || || ||||| |||||||||| Sbjct 230 ATGCAGTCATCACGGTTCCTGCTTATTTCAATGACTCCCAGCGTCAAGCCACTAAAGATG 171 Query 451380 CAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTC 451439 | ||| |||||||| | ||||| || || || || || || || || || || || Sbjct 170 CTGGAGTCATTGCTGGGCTCAATGTGCTGCGTATCATCAACGAGCCAACTGCTGCAGCCA 111 Query 451440 TAGCATATGGACT 451452 | || ||||| || Sbjct 110 TTGCTTATGGCCT 98 >seq280032 Length=493 Score = 91.5 bits (100), Expect = 6e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 451320 ATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATG 451379 ||||||| || || ||||| |||||||||||||| | || || ||||| |||||||||| Sbjct 269 ATGCAGTCATCACGGTTCCTGCTTATTTCAATGACTCCCAGCGTCAAGCCACTAAAGATG 328 Query 451380 CAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTC 451439 | ||| |||||||| | ||||| || || || || || || || || || || || Sbjct 329 CTGGAGTCATTGCTGGGCTCAATGTGCTGCGCATCATCAACGAGCCAACTGCTGCAGCCA 388 Query 451440 TAGCATATGGACT 451452 | || ||||| || Sbjct 389 TTGCTTATGGCCT 401 >seq137853 Length=2661 Score = 91.5 bits (100), Expect = 6e-13 Identities = 98/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 451320 ATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATG 451379 |||| || |||| || || || || || ||||| | ||||| |||||||| || |||| Sbjct 788 ATGCTGTTGTTACAGTACCTGCATACTTTAATGACTCGCAACGTCAAGCAACCAAGGATG 729 Query 451380 CAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTC 451439 | ||| ||| ||||||||||||| | |||| || ||||| ||||| ||||| ||| Sbjct 728 CTGGAACTATCTCTGGTTTAAATGTGTTAAGAATCATAAATGAGCCTACTGCAGCAGCTA 669 Query 451440 TAGCATATGG 451449 | || ||||| Sbjct 668 TCGCTTATGG 659 >seq375244 Length=1421 Score = 87.8 bits (96), Expect = 7e-12 Identities = 127/177 (72%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 63853 TCACTCCACCAATTATTTAAATTACCATCCGCATCAAATCTTTTTCCTTGATCATCAAAC 63912 || |||||||| ||| ||||||||| || | || || | ||||| || ||||| Sbjct 336 TCGCTCCACCAGTTACGTAAATTACCGTCGCCGTCGTATTTAGCACCTTGGTCGTCAAAA 277 Query 63913 CCATGAGTGATTTCATGAGCTATAACTACTCCAATTCCTCCATAATTTTGTGCAATCGTA 63972 ||||| | |||||| | || || | ||||| | || |||||| |||| || | Sbjct 276 CCATGGCCTAACTCATGACCAATTACCGCGCCAATAGCACCGTAATTTACTGCA-TCATC 218 Query 63973 TAAT-CTAAACTaaaaaaaGGTGGTTGTAAAATAGCAGCTGGAAATACAATTTCATT 64028 | | |||| ||||||| || || ||||||||||| |||||||| |||||||| || Sbjct 217 TGCTTCTAAGTTAAAAAATGGCGGCTGTAAAATAGCTGCTGGAAACACAATTTCGTT 161 >seq152719 Length=2073 Score = 86.0 bits (94), Expect = 2e-11 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || || || ||||||||||| ||||| ||||| || |||||| | Sbjct 726 ATGCAGATCTTTGTGAAGACCCTGACTGGTAAGACTATCACTCTGGAGGTTGAACCCAGC 667 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | | ||| || || || |||||||| || || ||||||||||| Sbjct 666 GACACCATTGAGAATGTAAAAGCTAAGATCCAGGATAAGGAGGGCATCCCTCCTGATCAG 607 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || | | || || | || || || || |||||||| | || || | |||||||| Sbjct 606 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGTCGCACCATGTCAGATTATAAC 547 Query 391230 AT 391231 || Sbjct 546 AT 545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1962415899126216