Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq79730 197 1e-44 seq439426 150 1e-30 seq340775 134 1e-25 seq300954 113 3e-19 seq413528 107 1e-17 seq280032 107 1e-17 seq509470 98.7 7e-15 seq137853 96.9 3e-14 seq525344 86.0 5e-11 >seq79730 Length=2051 Score = 197 bits (218), Expect = 1e-44 Identities = 935/1469 (64%), Gaps = 16/1469 (1%) Strand=Plus/Plus Query 517249 TTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAAT 517308 ||| || |||| | || || ||||| || |||||||| | || || || || || | Sbjct 531 TTTGTCGACGGCGGATACGTTCAGAATGCCGTTGGCATCAATGTCGAAAGTTACCTCCAC 590 Query 517309 TTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATT 517368 || || || |||| ||||||| ||||| || | | | ||| | ||||| || Sbjct 591 CTGTGGTACACCTCGGGGAGCAGGAGGGATGCCGGCAAGCTCAAACTTGCCCAGGAGGTT 650 Query 517369 ATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATT 517428 || || || || | || || ||||| | | || || || ||| || || Sbjct 651 GTTGTCCTTGGTCATGGCTCTCTCGCCCTCATACACCTGAATTAGCACACCAGGCTGGTT 710 Query 517429 ATCTGAATAAGTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAA 517487 ||| | || || | || | ||||| ||| || | || || || ||||| | | | Sbjct 711 ATCAGCGTAGGTGGAGAAGA-TCTGGGTTTGCTTGCTGGGGATAGTGGTGTTGCGTTTGA 769 Query 517488 TAATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAA 517547 | | ||||| | ||||| | || || | ||| ||||| || |||| || || | Sbjct 770 TTAGCGGCGTCATGACTCCACCAACAGTCTCAATACCCAGAGACAGGGGAGCCACGTCCA 829 Query 517548 CTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAG 517607 || | | || ||| | || || ||| | || | || || || || || | | Sbjct 830 GCAGCAGCAGATCTTGGACGTTCTCTGAAGTGTCTCCCATGAGGATGGCAGCCTGGACTG 889 Query 517608 CAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGA 517667 | |||||||| || || |||||||| || || | | | | || |||| | | ||||| | Sbjct 890 CTGCACCATAAGCCACTGCTTCATCTGGGTTGATACTCTTGTTCAGTTCTCTGCCATTAA 949 Query 517668 AAAAAT-TTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACA 517726 | |||| ||| ||||| || | | || ||||| | | || || ||||| | || Sbjct 950 AGAAATCTTGCAAGAACTTCTGG-ATTTTGGGAATTCTTGTGGAGCCACCAACCAGGACG 1008 Query 517727 ATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCA 517786 |||||||| | | || ||||||| || ||||| || |||| || || || || Sbjct 1009 ATTTCATGGATCATGGACTTATCCATCTTGGAATCTTTTAGGGCTTTCTCCACTGGCTCC 1068 Query 517787 AGACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACA 517846 || | || || | ||||| || || || || || || || || || Sbjct 1069 AGTGTTCCCCTGAAGAGCTCTGAGTTGAGCTCCTCAAAGCGTGCCCTTGT--GATGGAGG 1126 Query 517847 T-TATAA-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAG 517904 | || || || || || || |||| ||| || | |||||| | | || || || | Sbjct 1127 TGTAGAAGTCGATGCCCTCAAACAGAGAGTCGATTTCAATGCTGGCCTGGGTGCTTGAGG 1186 Query 517905 ATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATT 517964 | || | | || || | |||||| || || | ||||| | | ||| | || ||| Sbjct 1187 ACAGGGTCCTCTTCGCTCTTTCACAAGCGGTGCGCAGTCTCCTAACTGCTCT--CTTATT 1244 Query 517965 --GATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACG 518022 | | | ||| | || | ||||| || || || |||| | | || | || Sbjct 1245 TTGGCTGATGTCTTTCTTGTGCTTTCTTTTAAATTCCTCAAGGAAGTGACTGACCATCCG 1304 Query 518023 ATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAG 518082 ||| ||||| || || || || | | || | ||||| || ||| |||| | || | Sbjct 1305 ATTGTCAAAGTCCTCTCCACCAAGGTGTGTGTCTCCTGCAGTGGCTTTTACCTCAAAGAT 1364 Query 518083 TCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAG 518142 ||||| |||| | || | | || || ||| || ||||| | |||||| || || Sbjct 1365 GCCATCCTCAATGGTCAGGATGGACACGTCGAAGGTGCCTCCACCGAGATCAAAGATGAG 1424 Query 518143 TACATTCATTTCTTTGTCTTGGTT-TTTATCAAGACCATACGCAAAAGCAGCAGCAGTTG 518201 || || ||| |||| | |||||| | || || |||| || || || || | Sbjct 1425 CACGTTGCGCTCTCC-TCTTTTTCCTTTATCCAAGCCGTAGGCAATCGCTGCTGCTGTGG 1483 Query 518202 GTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTT 518261 | || || || || |||| |||||| ||||||| || ||| ||||| |||||||||| Sbjct 1484 GCTCGTTGATGATCCTCAGAACATTCAGACCAGAGATCACTCCAGCATCCTTAGTGGCTT 1543 Query 518262 GTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTAC 518321 | || || ||||| || ||||| || || || || || || |||| | || | || | Sbjct 1544 GCCTCTGAGAATCATTGAAATAAGCTGGCACTGTGATGACTGCATTTGAGACCTTTTGTC 1603 Query 518322 CAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTG 518381 | | || || || | | ||||||||| || | |||||| || |||| || | Sbjct 1604 CCAGGTAGGCCTCGGCTATCTCCTTCATTTTAACCAAGACCATTGACGAGATTTCCTC-G 1662 Query 518382 GGGAATATTGCTT-GGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACA 518440 ||| | | |||| || |||| || ||| || | || | || || | || Sbjct 1663 GGGTAGAAGGCTTTGGTTTCACCTTTATACTCCACCTGAACTTTGGGCTTTCCGTTATCA 1722 Query 518441 TTAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCT 518500 | || || || || ||||| |||||| || || || || | ||||||||| | | Sbjct 1723 TCGATCACCTTGAAAGGCCAAAGTTTCATGTCGGACTGGACGATGGAGTCATTAAACTTT 1782 Query 518501 CTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATAT 518560 || || |||| ||| || || ||||| || |||||||| || || || || | || | Sbjct 1783 CTTCCGATTAGTCGCTTGGCGTCAAATATTGTATTGGTGGGGTTCATGGCGACCTGGTTC 1842 Query 518561 TTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTG 518620 ||||| ||||||||||| || ||||| || |||| | ||||| |||||||| Sbjct 1843 TTGGCAGCATCTCCAATGAGCCTCTCTGTGTCGCTAAAGGCCACATAGCTGGGAGTTGTC 1902 Query 518621 CGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAA 518680 | || || || || || || || || || ||||| |||| ||| | || | || ||| Sbjct 1903 CTGTTGCCCTGGTCGTTGGCGATGATCTCCACTTTGCCATGTTGGAAAACTGCCACGCAA 1962 Query 518681 CTAAAAGTTGTTCCTAAATCAATACCAAT 518709 | | || ||||| ||||| || ||||| Sbjct 1963 GAATAGGTGGTTCCCAAATCTATGCCAAT 1991 >seq439426 Length=530 Score = 150 bits (166), Expect = 1e-30 Identities = 131/163 (80%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 518160 CTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCA 518219 |||| || ||||| | ||| || |||| || |||||||||||||| || ||||| | | Sbjct 182 CTTGCTTCTTATCGATACCGTAAGCAAGTGCTGCAGCAGTTGGTTCGTTGATAATACGCT 241 Query 518220 AAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAA 518279 ||||| |||||| ||||| | || |||||||| || ||||| | |||||||||||||| Sbjct 242 TAACATCAAGACCTGCAATACGACCAGCATCTTTCGTTGCTTGACGTTGTGAATCGTTAA 301 Query 518280 AATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACC 518322 | || |||||||| |||||||| || ||||| ||||||| ||| Sbjct 302 AGTAAGCAGGAACGGTAATAACCGCTTCAGTCACTTCTTCACC 344 >seq340775 Length=450 Score = 134 bits (148), Expect = 1e-25 Identities = 140/182 (77%), Gaps = 4/182 (2%) Strand=Plus/Plus Query 518173 AAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACC 518232 || |||||| || | || || || |||||||| || ||||| | | ||||| |||||| Sbjct 44 AATACCATAAGCTAGTGCCGCTGCCGTTGGTTCGTTGATAATACGCTTAACATCAAGACC 103 Query 518233 AGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAAC 518292 ||||| | || ||||||||||| ||||| | |||||||||||||| ||||| ||||| Sbjct 104 CGCAATACGACCAGCATCTTTAGTAGCTTGACGCTGTGAATCGTTAAAGTATGCCGGAAC 163 Query 518293 AGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTT--GCCGTTTGTTTCATT 518350 ||||||||| || ||||| || ||| ||| || || ||| ||||||| |||||| Sbjct 164 AGTAATAACTGCTTCAGTAACAGCTTCACC--TAAAAAGTCTTCAGCCGTTTTCTTCATT 221 Query 518351 TT 518352 || Sbjct 222 TT 223 Score = 87.8 bits (96), Expect = 1e-11 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 322243 ACCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCCGC 322302 ||| || || || || ||||| |||||||| || || || |||||| | |||||| Sbjct 47 ACCATAAGCTAGTGCCGCTGCCGTTGGTTCGTTGATAATACGCTTAACATCAAGACCCGC 106 Query 322303 AATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACAGT 322362 ||| | ||| ||| ||| ||||| | ||||| || ||||| ||||| || ||||| Sbjct 107 AATACGACCAGCATCTTTAGTAGCTTGACGCTGTGAATCGTTAAAGTATGCCGGAACAGT 166 Query 322363 AATAACTGCTTTATTAATAGGTT 322385 ||||||||||| | ||| || || Sbjct 167 AATAACTGCTTCAGTAACAGCTT 189 >seq300954 Length=1016 Score = 113 bits (124), Expect = 3e-19 Identities = 147/202 (73%), Gaps = 11/202 (5%) Strand=Plus/Minus Query 518154 CTTTGTC---TTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAA 518210 ||||||| || ||||| || | || || |||| |||||||| |||||||| || | Sbjct 838 CTTTGTCGCCTTTTTTTTTTTCCATGCCGTAAGCAAGGGCAGCAGCCGTTGGTTCGTTGA 779 Query 518211 TAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTG 518270 |||| || || | ||| || || | || |||||||| || ||||| | |||| Sbjct 778 TAAT-------ACGTTTA-ACCTGCGATACGACCAGCATCTTTCGTTGCTTGGCGCTGTG 727 Query 518271 AATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAG 518330 |||||||||| || ||||| || ||||| || || || || ||||||| ||| | |||| Sbjct 726 AATCGTTAAAGTAAGCAGGTACGGTAATGACTGCTTCTGTCACTTCTTCACCTAGATAAT 667 Query 518331 CGCTTGCCGTTTGTTTCATTTT 518352 | ||| |||| ||||||||| Sbjct 666 CTTCTGCTGTTTTTTTCATTTT 645 >seq413528 Length=500 Score = 107 bits (118), Expect = 1e-17 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 ||||| || || ||||| |||| || ||||||||||| || || || || | || ||| Sbjct 89 TTTTTGTCCAGGCCATAAGCAATGGCTGCAGCAGTTGGCTCGTTGATGATACGCAGCACA 148 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || || |||||||| ||| ||||||||||||||||| | || || || || ||||| Sbjct 149 TTGAGCCCAGCAATGACTCCAGCATCTTTAGTGGCTTGACGCTGGGAGTCATTGAAATAA 208 Query 518285 GCAGGAACAGTAATAACGGCAT 518306 |||||||| || || || |||| Sbjct 209 GCAGGAACCGTGATGACTGCAT 230 >seq280032 Length=493 Score = 107 bits (118), Expect = 1e-17 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 ||||| || || ||||| |||| || ||||||||||| || || || || | || ||| Sbjct 410 TTTTTGTCCAGGCCATAAGCAATGGCTGCAGCAGTTGGCTCGTTGATGATGCGCAGCACA 351 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || || |||||||| ||| ||||||||||||||||| | || || || || ||||| Sbjct 350 TTGAGCCCAGCAATGACTCCAGCATCTTTAGTGGCTTGACGCTGGGAGTCATTGAAATAA 291 Query 518285 GCAGGAACAGTAATAACGGCAT 518306 |||||||| || || || |||| Sbjct 290 GCAGGAACCGTGATGACTGCAT 269 >seq509470 Length=539 Score = 98.7 bits (108), Expect = 7e-15 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 366970 TTTATCAATAATAAAATAAAAATTGTAGTAGCCACAATAGCATTTGGTATGGGTATTAAT 367029 ||||| || || || | |||| ||||| || || | || ||||||||||||||| || Sbjct 369 TTTATTAAAGATGAAGTGGAAATCGTAGTTGCGACCGTGGCTTTTGGTATGGGTATTGAT 428 Query 367030 AAACCGGATGTTAGAGTTGTTATTCATTATGGAGCTCCCAAGAATATTGAAGGTTATTAT 367089 ||||| |||| | |||| | ||||||| | || ||||||||||| || ||| Sbjct 429 AAACCCAATGTACGTTTTGTGGTGCATTATGAAATACCTAAGAATATTGAGTCATACTAT 488 Query 367090 CAAGAAATTGGTAGAGCAGGTCGTGATGG 367118 ||||||| ||| |||||||| || ||||| Sbjct 489 CAAGAAACTGGGAGAGCAGGACGAGATGG 517 >seq137853 Length=2661 Score = 96.9 bits (106), Expect = 3e-14 Identities = 133/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 518523 CAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 518582 |||| | || ||||| || || || ||| | |||| ||||||||||||||||||||| Sbjct 1244 CAAAGACTGTGTTGGTGGGGTTCATGGCAACCTGATTTTTGGCTGCATCTCCAATCAGCC 1303 Query 518583 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 518642 ||||| ||||| || | ||||| || || || | || || || ||||| |||| Sbjct 1304 TCTCTGTATCTGTGAAGGCCACATAGCTGGGTGTGGTCCTGTTGCCCTGGTCATTGGCAA 1363 Query 518643 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 518702 | || ||||| || |||| || | ||||| ||||| | || ||||| | ||| | Sbjct 1364 TGATCTCAACCTTTCCATGCTGGAACACACCAACACAGGAGTAGGTGGTTCCAAGATCGA 1423 Query 518703 TACCAA 518708 |||||| Sbjct 1424 TACCAA 1429 >seq525344 Length=259 Score = 86.0 bits (94), Expect = 5e-11 Identities = 105/141 (74%), Gaps = 7/141 (5%) Strand=Plus/Minus Query 322243 ACCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTAT---TTTAAGAACATCTAAACC 322299 |||||| |||||||| || || |||||||| || || || ||| | |||| | ||| Sbjct 172 ACCGTAGGCAAGAGCCGCAGCTGTTGGTTCGTTGATGATACGTTTTA---CATCAAGACC 116 Query 322300 CGCAATTTTAGCAGAAT-CAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTA 322358 |||||||||| | | | | |||||||| | |||| |||||||||||| ||||||| Sbjct 115 CGCAATTTTACCCGCGTACTTTTGTTGCTTGACGTTGTGAGTCATTAAAATAAGCTGGTA 56 Query 322359 CAGTAATAACTGCTTTATTAA 322379 | || | ||| |||| | ||| Sbjct 55 CGGTTACAACCGCTTCAGTAA 35 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3754745259756412