Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_014661.1 Length=164093 Score E Sequences producing significant alignments: (Bits) Value seq449735 197 1e-45 seq459402 98.7 1e-15 seq513135 95.1 1e-14 seq510557 82.4 8e-11 seq489937 82.4 8e-11 >seq449735 Length=3187 Score = 197 bits (218), Expect = 1e-45 Identities = 341/490 (70%), Gaps = 4/490 (1%) Strand=Plus/Minus Query 141402 GGACTGAACAAAGTAATGTAGTCGTTATTGATATAACGCTCAATA-AGTAACTCATTGAT 141460 || || ||||| ||||||||||||| || || ||||| | || | || | ||| | Sbjct 488 GGGCTAAACAAGGTAATGTAGTCGTCTTTAATTAAACGCG-AGTACATTAGTTTATTAAA 430 Query 141461 TTGAAGGCCATAATCCATGTGACGAATACGGTTTTCTTCAACACCTTTGTTGTTCTTCAA 141520 || | ||| ||||| | ||||| | ||||| || ||||| || ||| || || | Sbjct 429 CTGTACGCCGTAATCTAAATGACGCACGCGGTTGTCATCAACCCCGCGGTTATTTTTAAG 370 Query 141521 CACAATCAAGTTTTCCACTTCAAGGTGCCACATAGGGAAGAACATTGTTGCCGAACCTTT 141580 || | || |||||| ||||| | ||||| | ||| |||||| ||||| | || Sbjct 369 TACTAACAGGTTTTCTACTTCTAAATGCCAAAGCGGGTAGAACAAGGTTGCTGCGCCGCC 310 Query 141581 ACGAATACCACCTTGAGAACAGCAATGAACCGCTGAGTTAAAGTGCTTCCAGAAAGGTAC 141640 ||| | ||| ||||| ||||||| | |||||||| | ||||||||| | ||||| | Sbjct 309 ACGTACACCGCCTTGCGAACAGCTTTTAACCGCTGTTTGAAAGTGCTTATAAAAAGGAA- 251 Query 141641 TACG-CCAGTGTGTTTGACTTCGCCTGGGCCAATTTTCGAACCTTCAGCTCGAATCATGC 141699 ||| || || || | ||||||| || ||| | ||| || ||||| | Sbjct 250 TACAACCCGTATGGTACGCTTCGCCATTGCGAATGTGGCTACCCAGTGCACGAATGCGAC 191 Query 141700 CTGCGTTAATCCCGATACCTGCTCGCTTAGAAACATACTTAACAATAGCAGAGTTTGCAT 141759 |||||||||| || || || || || | || || || |||||||| ||||| | Sbjct 190 CTGCGTTAATGCCAATGCCGGCACGTTGCGATACGTATTTAACAATTGCAGACGAGGTGG 131 Query 141760 CATTGATTGAGTCAAGGCTGTCACCAGATTCAATAACTACACATGAACTGAATTGACGAG 141819 | || ||||| ||||||||||| ||| | || || | |||||| || || || || || | Sbjct 130 CGTTAATTGAATCAAGGCTGTCGCCACACTCTATTAATACACACGAGCTAAACTGGCGTG 71 Query 141820 TTGGGGTACGAACACCAGCCATAATTGGAGTAGGCAACGAGATTTTACGAGTTGAAACAG 141879 |||| ||||||||||| ||||||||||| ||||| | || |||||| ||||| | Sbjct 70 TTGGCGTACGAACACCTGCCATAATTGGCGTAGGTAGTGAAATTTTAAACAATGAAATCG 11 Query 141880 CTTCATAAAA 141889 | || ||||| Sbjct 10 CATCGTAAAA 1 >seq459402 Length=1498 Score = 98.7 bits (108), Expect = 1e-15 Identities = 72/84 (86%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 80034 TTGGCTCCCCAGACACGGATCGAACGTGTGACCCACAGATTAACAGTCTGCTGCTCTACC 80093 |||||| | ||||| || |||||| ||||||| ||||||||||||||| ||||||||| Sbjct 163 TTGGCTGCTTAGACAGGGCTCGAACCTGTGACCATCAGATTAACAGTCTGGTGCTCTACC 104 Query 80094 AACTGAGCTACTGAGGAAGAAATT 80117 |||||||||||| || || ||||| Sbjct 103 AACTGAGCTACTAAGCAATAAATT 80 >seq513135 Length=367 Score = 95.1 bits (104), Expect = 1e-14 Identities = 118/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 141729 GAAACATACTTAACAATAGCAGAGTTTGCATCATTGATTGAGTCAAGGCTGTCACCAGAT 141788 || ||||||||||| |||| | || | |||||||||| || | ||||| || Sbjct 366 GATACATACTTAACGATAGAGCTGCATGTAGCATTGATTGAATCTAAACTGTCGTTGGAC 307 Query 141789 TCAATAACTACACATGAACTGAATTGACGAGTTGGGGTACGAACACCAGCCATAATTGGA 141848 |||||||| ||||| ||||| ||||| || || || || | ||| |||| |||||| || Sbjct 306 TCAATAACCACACAAGAACTAAATTGTCGTGTAGGTGTTCTAACCCCAGACATAATAGGT 247 Query 141849 GTAGGCAACGAGATTTTACGAGTTGAAACAGCTTCATAAAAT 141890 || || | |||||||||| | | || | | |||||| ||| Sbjct 246 GTTGGTAGCGAGATTTTATGCTTCGATGCTGATTCATAGAAT 205 >seq510557 Length=484 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/88 (81%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 79191 ACCTATAATTTGGTGCACGAGACATGATTCGAACATGTGACCTGCTGCTCTTCAGGCAGC 79250 ||||| || |||||| | ||| | || | |||| || ||||| || ||||||||| || Sbjct 449 ACCTACAAATTGGTGGAAGAGTTAGGAATTGAACCTGCGACCTTCTCCTCTTCAGGGAGA 390 Query 79251 CACTCTACCAACTGAGTTACTCGTGCGT 79278 |||||| ||||||||||||||| ||||| Sbjct 389 CACTCTTCCAACTGAGTTACTCTTGCGT 362 >seq489937 Length=329 Score = 82.4 bits (90), Expect = 8e-11 Identities = 105/141 (74%), Gaps = 3/141 (2%) Strand=Plus/Plus Query 79191 ACCTATAATTTGGTGCACGAGACATGATTCGAACATGTGACCTGCTGCTCTTCAGGCAGC 79250 ||||| || |||||| | || | || | |||| | ||||| || ||||||||| || Sbjct 45 ACCTACAAATTGGTGGAACAGTTAGGAATTGAACCTAAGACCTTCTCCTCTTCAGGGAGA 104 Query 79251 CACTCTACCAACTGAGTTACTCGTGCGTTATTTGGTAGCGATATCCAGACTCGAA-CTGG 79309 ||||||||||||||||||||| || | || |||| ||| | | || | ||| ||| Sbjct 105 CACTCTACCAACTGAGTTACT-GTTCCATAAATGGTTGCGGAAACAGGATTTGAACCTGT 163 Query 79310 AACCT-TTGGGTTATGAGCCC 79329 |||| ||||||||||| ||| Sbjct 164 GACCTGTTGGGTTATGAACCC 184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521521192815760