Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_014661.1
Length=164093
Score E
Sequences producing significant alignments: (Bits) Value
seq449735 197 1e-45
seq459402 98.7 1e-15
seq513135 95.1 1e-14
seq510557 82.4 8e-11
seq489937 82.4 8e-11
>seq449735
Length=3187
Score = 197 bits (218), Expect = 1e-45
Identities = 341/490 (70%), Gaps = 4/490 (1%)
Strand=Plus/Minus
Query 141402 GGACTGAACAAAGTAATGTAGTCGTTATTGATATAACGCTCAATA-AGTAACTCATTGAT 141460
|| || ||||| ||||||||||||| || || ||||| | || | || | ||| |
Sbjct 488 GGGCTAAACAAGGTAATGTAGTCGTCTTTAATTAAACGCG-AGTACATTAGTTTATTAAA 430
Query 141461 TTGAAGGCCATAATCCATGTGACGAATACGGTTTTCTTCAACACCTTTGTTGTTCTTCAA 141520
|| | ||| ||||| | ||||| | ||||| || ||||| || ||| || || |
Sbjct 429 CTGTACGCCGTAATCTAAATGACGCACGCGGTTGTCATCAACCCCGCGGTTATTTTTAAG 370
Query 141521 CACAATCAAGTTTTCCACTTCAAGGTGCCACATAGGGAAGAACATTGTTGCCGAACCTTT 141580
|| | || |||||| ||||| | ||||| | ||| |||||| ||||| | ||
Sbjct 369 TACTAACAGGTTTTCTACTTCTAAATGCCAAAGCGGGTAGAACAAGGTTGCTGCGCCGCC 310
Query 141581 ACGAATACCACCTTGAGAACAGCAATGAACCGCTGAGTTAAAGTGCTTCCAGAAAGGTAC 141640
||| | ||| ||||| ||||||| | |||||||| | ||||||||| | ||||| |
Sbjct 309 ACGTACACCGCCTTGCGAACAGCTTTTAACCGCTGTTTGAAAGTGCTTATAAAAAGGAA- 251
Query 141641 TACG-CCAGTGTGTTTGACTTCGCCTGGGCCAATTTTCGAACCTTCAGCTCGAATCATGC 141699
||| || || || | ||||||| || ||| | ||| || ||||| |
Sbjct 250 TACAACCCGTATGGTACGCTTCGCCATTGCGAATGTGGCTACCCAGTGCACGAATGCGAC 191
Query 141700 CTGCGTTAATCCCGATACCTGCTCGCTTAGAAACATACTTAACAATAGCAGAGTTTGCAT 141759
|||||||||| || || || || || | || || || |||||||| ||||| |
Sbjct 190 CTGCGTTAATGCCAATGCCGGCACGTTGCGATACGTATTTAACAATTGCAGACGAGGTGG 131
Query 141760 CATTGATTGAGTCAAGGCTGTCACCAGATTCAATAACTACACATGAACTGAATTGACGAG 141819
| || ||||| ||||||||||| ||| | || || | |||||| || || || || || |
Sbjct 130 CGTTAATTGAATCAAGGCTGTCGCCACACTCTATTAATACACACGAGCTAAACTGGCGTG 71
Query 141820 TTGGGGTACGAACACCAGCCATAATTGGAGTAGGCAACGAGATTTTACGAGTTGAAACAG 141879
|||| ||||||||||| ||||||||||| ||||| | || |||||| ||||| |
Sbjct 70 TTGGCGTACGAACACCTGCCATAATTGGCGTAGGTAGTGAAATTTTAAACAATGAAATCG 11
Query 141880 CTTCATAAAA 141889
| || |||||
Sbjct 10 CATCGTAAAA 1
>seq459402
Length=1498
Score = 98.7 bits (108), Expect = 1e-15
Identities = 72/84 (86%), Gaps = 0/84 (0%)
Strand=Plus/Minus
Query 80034 TTGGCTCCCCAGACACGGATCGAACGTGTGACCCACAGATTAACAGTCTGCTGCTCTACC 80093
|||||| | ||||| || |||||| ||||||| ||||||||||||||| |||||||||
Sbjct 163 TTGGCTGCTTAGACAGGGCTCGAACCTGTGACCATCAGATTAACAGTCTGGTGCTCTACC 104
Query 80094 AACTGAGCTACTGAGGAAGAAATT 80117
|||||||||||| || || |||||
Sbjct 103 AACTGAGCTACTAAGCAATAAATT 80
>seq513135
Length=367
Score = 95.1 bits (104), Expect = 1e-14
Identities = 118/162 (73%), Gaps = 0/162 (0%)
Strand=Plus/Minus
Query 141729 GAAACATACTTAACAATAGCAGAGTTTGCATCATTGATTGAGTCAAGGCTGTCACCAGAT 141788
|| ||||||||||| |||| | || | |||||||||| || | ||||| ||
Sbjct 366 GATACATACTTAACGATAGAGCTGCATGTAGCATTGATTGAATCTAAACTGTCGTTGGAC 307
Query 141789 TCAATAACTACACATGAACTGAATTGACGAGTTGGGGTACGAACACCAGCCATAATTGGA 141848
|||||||| ||||| ||||| ||||| || || || || | ||| |||| |||||| ||
Sbjct 306 TCAATAACCACACAAGAACTAAATTGTCGTGTAGGTGTTCTAACCCCAGACATAATAGGT 247
Query 141849 GTAGGCAACGAGATTTTACGAGTTGAAACAGCTTCATAAAAT 141890
|| || | |||||||||| | | || | | |||||| |||
Sbjct 246 GTTGGTAGCGAGATTTTATGCTTCGATGCTGATTCATAGAAT 205
>seq510557
Length=484
Score = 82.4 bits (90), Expect = 8e-11
Identities = 71/88 (81%), Gaps = 0/88 (0%)
Strand=Plus/Minus
Query 79191 ACCTATAATTTGGTGCACGAGACATGATTCGAACATGTGACCTGCTGCTCTTCAGGCAGC 79250
||||| || |||||| | ||| | || | |||| || ||||| || ||||||||| ||
Sbjct 449 ACCTACAAATTGGTGGAAGAGTTAGGAATTGAACCTGCGACCTTCTCCTCTTCAGGGAGA 390
Query 79251 CACTCTACCAACTGAGTTACTCGTGCGT 79278
|||||| ||||||||||||||| |||||
Sbjct 389 CACTCTTCCAACTGAGTTACTCTTGCGT 362
>seq489937
Length=329
Score = 82.4 bits (90), Expect = 8e-11
Identities = 105/141 (74%), Gaps = 3/141 (2%)
Strand=Plus/Plus
Query 79191 ACCTATAATTTGGTGCACGAGACATGATTCGAACATGTGACCTGCTGCTCTTCAGGCAGC 79250
||||| || |||||| | || | || | |||| | ||||| || ||||||||| ||
Sbjct 45 ACCTACAAATTGGTGGAACAGTTAGGAATTGAACCTAAGACCTTCTCCTCTTCAGGGAGA 104
Query 79251 CACTCTACCAACTGAGTTACTCGTGCGTTATTTGGTAGCGATATCCAGACTCGAA-CTGG 79309
||||||||||||||||||||| || | || |||| ||| | | || | ||| |||
Sbjct 105 CACTCTACCAACTGAGTTACT-GTTCCATAAATGGTTGCGGAAACAGGATTTGAACCTGT 163
Query 79310 AACCT-TTGGGTTATGAGCCC 79329
|||| ||||||||||| |||
Sbjct 164 GACCTGTTGGGTTATGAACCC 184
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 521521192815760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |