Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq44246 138 1e-27 seq496362 122 1e-22 seq504380 113 6e-20 seq448634 93.3 5e-14 seq478780 84.2 3e-11 >seq44246 Length=4029 Score = 138 bits (152), Expect = 1e-27 Identities = 948/1498 (63%), Gaps = 57/1498 (4%) Strand=Plus/Plus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 || ||| ||||| ||||| |||| || |||| ||||| | ||||| || | | Sbjct 349 CCGCAGCACATGCTCATGAGGGTGTCGGTCGGAATCCACAAGACGGATATCGACGCCGCC 408 Query 111672 TTGGAGACATACGACAAGATGTCCC-GTGGTATGTTCATCCACGCAACACCAACCCTCTT 111730 | ||||| ||| || | | || | || ||||| |||||| | || || ||||| Sbjct 409 ATCGAGACCTACAACCTGCTCTCGGAGAAGTG-GTTCACCCACGCCTCCCCCACGCTCTT 467 Query 111731 CAACGCTGGTACACCAA--GACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAG 111788 |||||| || || ||| | || || | ||||| || ||||| | | | ||||| Sbjct 468 CAACGCAGGAAC--CAACCGGCCTCAGCTCTCCAGCTGCTTCCTGCTCACCATGAAGGAC 525 Query 111789 GATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCT 111848 || ||| | ||||| |||| ||| || | | ||||| | ||||| |||| ||| Sbjct 526 GACAGCATCGAGGGCATCTACGACACGCTGAAGCAGTGTGCACTCATCTCCAAGTCGGCA 585 Query 111849 GGTGGTATCGGGATGCACATCCATGATG--TCAGAGCCAACAAGTCTCGTATTAGAGGTA 111906 || || ||||| || | || | || || || ||| | | || || | Sbjct 586 GGAGGAATCGGTGTGGCCGTCA--GCTGCATCCGATCCACCGGGAGCTACATCGCCGGCA 643 Query 111907 CAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCT 111966 | || || | || | || | | || ||||| | || | ||| |||||| |||| Sbjct 644 CCAACGGCAACTCCAACGGGCTGGTCCCCATGCTGAGGGTCTACAACAACACAGCACGCT 703 Query 111967 ATGTAAACCAAGCTGGGCGTCG-CAAGGGATCTATCGCAGTC------TATCTTGAGCCA 112019 |||| |||| ||||| | |||| || | ||| || || || ||||| Sbjct 704 ATGTCGACCA----GGGCGGCAACAAGCGACCCGGCGCCTTCGCCATGTACCTGGAGCCG 759 Query 112020 TGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCG 112079 |||||| || | | || ||||| ||| || ||| | || || |||||| | Sbjct 760 TGGCACTTTGACGTGTTCGACTTCCTGGAGCTGAAGAAGAAC-ACGGGGA--AGGAGGAG 816 Query 112080 CGGTG---CCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTT 112136 | | | | | |||||||||| || | ||||| || || || ||||||||||| || Sbjct 817 CAGAGAGCCAGAGATCTCTTCTACGGCTTGTGGATCCCCGACCTGTTCATGAAGAGGGT- 875 Query 112137 GAGGAGAGTGGCAAT---TGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGA- 112192 |||||| | | |||||||| | ||||| | || ||||| || ||| Sbjct 876 --GGAGAGCAACCAGGACTGGTCTCTGATGTGTCCCAGCGAGAGCCCCGGGCTGGACGAG 933 Query 112193 TGCCGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGAC 112252 ||| | ||| ||||||||||| |||||||| | || ||| || | |||| | Sbjct 934 TGCTGGGGG-GAGGAGTTTGAGAAGCTCTACACCCAATATGAGCGGGAGGGCCGGGTCAA 992 Query 112253 TGCGAC-GGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTG 112311 ||| |||| ||| | |||||| | || || || |||| || || ||| | | Sbjct 993 -GCGTGTGGTGAAGGCTCAGCAGGTGTGGCACGCCATCATCGAGTCCCAGACGGAGTCGG 1051 Query 112312 GTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGG 112371 | || || || ||||| |||||||||||||| ||| ||||| || || |||| ||| Sbjct 1052 GCACGCCGTACATGCTGTACAAAGACGCCTGCAACAGGAAGAGCAACCAGCAGAACCTGG 1111 Query 112372 GTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAAT-TTACAGACAAAGATGAG 112430 | |||||| | ||||||||| || |||||| | |||| | ||| |||||| Sbjct 1112 GAACCATCAAGTGCAGCAACCTCTGCACGGAAATCGTTGAATACTCCAG-TGGCGATGAG 1170 Query 112431 ACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAG 112490 ||||||||||| || || || ||||||||| || ||| || || ||| | Sbjct 1171 GTCGCTGTGTGTAATCTGGCCTCCATCGCTCTCAACATGTACGTCACCCCCGAG---CGG 1227 Query 112491 ACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGA 112550 || ||||| | | ||||| | || || ||| || || ||||| |||| Sbjct 1228 ACTTTTGACTTCAAGAAACTGGAGTCTGTGACCAAAGTGATCGTGAAGAACCTGAACAAG 1287 Query 112551 GTTATTGATAGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGACAC 112607 | || || | || || ||||| || ||| | | || | || || | | | ||| Sbjct 1288 ATCATAGAGATTAACTTCTACCCGGTGCCCGAGGCCGATC---AGTCCAACAAGCGCCAC 1344 Query 112608 CGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCA 112667 | || || ||| |||| ||||| || || || || | ||||| || || || | Sbjct 1345 AGGCCGATCGGTATCGGCGTCCAGGGCCTGGCCGACGCCTTCATCCTGATGCGTTACCCC 1404 Query 112668 TTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCC 112727 ||||| | ||| || || | || | || |||||||| || || ||||| Sbjct 1405 TTTGAAAGCCCCGAGGCCCAGCTGCTGAACATCCAGATCTTTGAGACCATCTACTACGCC 1464 Query 112728 GCTCTTGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGT 112787 || || ||||| || | || |||| | | || || || || || | |||| Sbjct 1465 GCCCTGGAGGCCAGCTGCGAACTGGCCGCCGAGCTGGGCCCCTACGACACGTACGAGG-- 1522 Query 112788 TCTCCAGCTTCA-CAAGGG-GTGCTTCAATTTGATATGTGGGAAGGTGA-GACCAAGCTT 112844 |||| | ||| |||||| | || || | || ||||||| || || | ||| Sbjct 1523 -CTCCCCCGTCAGCAAGGGCATCCTCCAGTACGACATGTGGG-AGAAGACGCCCACCGAC 1580 Query 112845 CACTACGACTGGGACGCT-CTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCT 112903 | | |||| ||| ||| || ||||| ||| || | || | | ||||| || Sbjct 1581 CTGTGGGACT-GGAAGCTGCTGAAGGAGAAGATCGCCAAGCACGGCGTGAGGAACAGCCT 1639 Query 112904 TTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTT 112963 || |||| || ||||| || ||||||||||| || ||| |||| || || || | | | Sbjct 1640 GCTGCTGGCCCCGATGCCCACGGCCTCCACCGCCCAGATCCTGGGCAACAACGAGTCCAT 1699 Query 112964 TGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGT 113023 || ||||||| | |||||||| | | ||| | |||||||| ||| || Sbjct 1700 CGAGGCCTACACCAGCAACATCTACACCCGCCGGGTCCTGTCAGGAGAGTTCCAGATCGT 1759 Query 113024 CAACAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAG 113081 |||| ||||| | | ||||| | |||| || || ||| | |||| |||||| Sbjct 1760 CAACCCCCATCTGCTCAAGGACCTGACGGAGAGAGGGCTGTGGGGCGAGGAGATGAAG 1817 >seq496362 Length=882 Score = 122 bits (134), Expect = 1e-22 Identities = 334/504 (66%), Gaps = 16/504 (3%) Strand=Plus/Plus Query 101817 TGGACTGCTGAAGAGGTAGATCTCTCAAAGGATTTGGACGATTGGAAGACTC---TAAAT 101873 |||||||| ||||| | ||| | ||| | ||||| |||| ||||| | | ||| Sbjct 118 TGGACTGCCGAAGAAATTGATTTGTCACAAGATTTAAACGACTGGAATAACAAGTTGAAT 177 Query 101874 GAAAATGAAAAGAAATTCATAAAATACATCCTGGCATTCTTTGCTGGGTCCGATGGAATT 101933 || | ||| | | || || ||| |||| | ||||| || || | || || |||||| Sbjct 178 AAAGACGAACAATACTTTATCAAACACATTTTAGCATTTTTCGCCGCTTCAGACGGAATT 237 Query 101934 GTTTTTGAGAATATCAATAACAACTTTGCTGATGAGGTGCAATCCTCTGAAGCGAGAT-C 101992 || ||| ||| | | | ||||||| |||| ||||||| ||||||||| || | Sbjct 238 GTAAATGAAAATCTTGCTGAAAACTTTGTAAATGAAGTGCAATATGCTGAAGCGAAATTC 297 Query 101993 TTTCTATGCGTATCAATGTCATAATG-AAATGGTGCATGGGGAGACATACAGTAAACTCA 102051 |||||||| || || | |||| ||| ||| | || | || || || | | Sbjct 298 TTTCTATG-GTTTCCAAATCATGATGGAAAATATTCACAGCGAAACGTATTCCTTGTTAA 356 Query 102052 TAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCT-TTGAAGCCATCCAAACA 102110 | |||| ||| | || || | || ||||| ||| | | | || || ||| || Sbjct 357 TCGACACTTATGTAAAAGACGAAGCAGAGAA--AGCCGATTTATTCAACGCATTAGAAGT 414 Query 102111 GTTCCATG-TATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCG 102169 || | || ||| ||||||||||||| ||||| || | ||| ||||| || | Sbjct 415 TTTTCCTGCTATCAAAAAGAAAGCGGACTGGGCAATTCAATGGATTGATTCAGA------ 468 Query 102170 TTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTC 102229 ||| || || |||||| | | || ||||| || || || || |||||||| ||| | Sbjct 469 TTCTTTCGCAGAGCGATTGATTGCTTTTGCAGCAGTGGAAGGAATTTTCTTCTCAGGTGC 528 Query 102230 CTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAA 102289 || || | |||| ||| | || || |||||| | |||||||| | ||||| || Sbjct 529 TTTTTGTTCCATTTTCTGGTTGAAAAAACGAGGTTTGATGCCAGGATTGACATTCTCAAA 588 Query 102290 CGAGCTTATCTCTCGTGACGAGGG 102313 ||| | || ||||||||||| || Sbjct 589 CGAATTGATTTCTCGTGACGAAGG 612 >seq504380 Length=601 Score = 113 bits (124), Expect = 6e-20 Identities = 266/391 (68%), Gaps = 22/391 (6%) Strand=Plus/Plus Query 15972 TCAAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATT--CG 16029 |||||||||||||| || ||| | ||||| | || || || || |||||||| | Sbjct 14 TCAAAACCATCCATTTCGACCAATAATTGGTTCAGTGTCTGCTCACGCTCATCATTACCA 73 Query 16030 CTGGC-ATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACG 16088 | | | |||||| ||| | || || || |||||||| |||||||| |||| | Sbjct 74 CCGCCCATACCAGAGCCAC---GATGACGACCGACCGCATCAATTTCATCAATAAAGATG 130 Query 16089 ATGCATGGT----TGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCC 16144 || || || | |||| || | ||| || | ||| |||||||| ||| || Sbjct 131 ATACAAGGCGCGCTCTTTTTAGCCTG----TTCGAACATATCGCGTACACGTGAGGCACC 186 Query 16145 CACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAG 16203 ||||| ||||||||||| ||||| | | | | | |||| || ||| || || |||| Sbjct 187 GACACCGACAAACATCTCAACAAAATCAGAACCTG-AGATTGAGAAGAACGGCACTTTAG 245 Query 16204 ATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGA 16263 |||||| |||||||||| ||| | | || ||||| |||||||| ||| | | | Sbjct 246 CTTCACCAGCAATGGCTCTGGCTAACAAGGTTTTACCGGTACCTGGAGGACCTACCATTA 305 Query 16264 GGGCACCTCGTGGAATCTTGGCGCCA--CTTCCAAAGTATCTCTCA-GGTTGCTTAAGAA 16320 | ||| ||||||||| | || ||| ||| || || | ||| ||| || ||| || Sbjct 306 AGATACCACGTGGAATCGTCGCACCAAGCTTGGTAA--ATTTATCAGGGTCGCGTAA-AA 362 Query 16321 AATCCACAATCTCTTCCAATTCATCTTTGGC 16351 | || || | || ||| ||| |||||||| Sbjct 363 ACTCGACCACTTCGACCACTTCTTCTTTGGC 393 >seq448634 Length=577 Score = 93.3 bits (102), Expect = 5e-14 Identities = 222/327 (68%), Gaps = 18/327 (6%) Strand=Plus/Minus Query 15932 GCGATTCGTTGCGGCGATGACAACAATACCTGTTTCGTTATCA---AAACCATCCATCTC 15988 ||| || ||||| || || || | ||||||| |||||| || ||||||||||| || Sbjct 545 GCGGTTAGTTGCAGCAATAACGATAATACCT---TCGTTACCACCAAAACCATCCATTTC 489 Query 15989 TGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATT--CGCTGGC-ATACCACCAGC 16045 | | ||||| | ||||| || ||||| || || ||| | | |||||| | | Sbjct 488 GACTAGCATTTGGTTTAGCGTTTGCTCACGTTCGTCGTTACCGCCGCCCATACCAGCGCC 429 Query 16046 ACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGT--TGATTT 16103 || ||| || || ||||| || |||||||| |||| || || ||| || ||| Sbjct 428 AC---GTTTACGACCTACAGCATCTATTTCATCAATAAAGATAATACAGGGTGATGCTTT 372 Query 16104 TCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCC 16163 | ||| || || | ||| ||||| || |||||||||||||||||||| || Sbjct 371 TTT--AGCTTGCTCGAACATATCTCGTACGCGAGATGCGCCCACACCAACAAACATTTCA 314 Query 16164 ACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCG 16222 ||||||| | | ||| || | | ||| || || || | |||||| |||| |||| Sbjct 313 ACAAAGTCCGAACCAGAA-ATAGTAAAGAACGGCACTTTTGCTTCACCAGCAACGGCTTT 255 Query 16223 GGCGAGAAGAGTCTTACCCGTACCTGG 16249 || || | || ||||| ||||| || Sbjct 254 AGCAAGTAACGTTTTACCTGTACCAGG 228 >seq478780 Length=440 Score = 84.2 bits (92), Expect = 3e-11 Identities = 139/196 (71%), Gaps = 6/196 (3%) Strand=Plus/Minus Query 16059 CCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTT--GATTTTCGCGAGCGACTT 16116 || || |||||||| ||||| || |||| ||| || ||| |||||| ||| || Sbjct 439 CCTACAGCATCAATTTCATCGATAAAGATGATACAAGGTGCAGATTTTTT--AGCTTGTT 382 Query 16117 CAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGG 16176 |||| | ||| || ||||| || || ||||| |||||||| |||||||| | | Sbjct 381 CAAACATATCACGCACACGAGATGCACCAACACCGACAAACATTTCCACAAAATCAGAAC 322 Query 16177 CGGAACATTGGAT-GAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTC 16235 | ||| || | | ||| || || ||||||||||| ||||| || || || | || Sbjct 321 CTGAA-ATGGTAAAGAATGGCACCTTAGATTCACCAGCAATAGCCTTCGCTAGTAAGGTT 263 Query 16236 TTACCCGTACCTGGCT 16251 ||||| |||||||||| Sbjct 262 TTACCTGTACCTGGCT 247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 616664882841440