Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq44246 176 5e-39
seq504380 107 2e-18
seq103378 100 3e-16
seq448634 89.7 6e-13
seq28532 82.4 9e-11
>seq44246
Length=4029
Score = 176 bits (194), Expect = 5e-39
Identities = 654/1007 (65%), Gaps = 26/1007 (3%)
Strand=Plus/Minus
Query 105841 CTTCATATCCTTGGACCAAAGACCAATCTTCTTGAGATCATTGACGAGATGCTTGTTGAC 105900
|||||| |||| | ||| || || ||| | | || || |||| ||||| ||||||
Sbjct 1817 CTTCATCTCCTCGCCCCACAGCCCTCTCTCCGTCAGGTCCTTGAGCAGATGGGGGTTGAC 1758
Query 105901 AATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTGTAGGGTTCAAA 105960
||| |||||||| | ||| | | |||||||| | ||||||| || |
Sbjct 1757 GATCTGGAACTCTCCTGACAGGACCCGGCGGGTGTAGATGTTGCTGGTGTAGGCCTCGAT 1698
Query 105961 GCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAG 106020
| | || || || |||| ||| || ||||||||||| || ||||| || |||| || ||
Sbjct 1697 GGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGCAG 1638
Query 106021 ACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTAGTTGA- 106079
||||| | | || | | ||| ||||| || | | |||||| | |
Sbjct 1637 GCTGTTCCTCACGCCGTGCTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCACAGGTC 1578
Query 106080 GCTTGGTTTCACCTTCCCACATATCAAATTGAAGCAC-CCCTTGG-GACGTGGGAGAACC 106137
| | || || || ||||||| || | || || | |||||| |||| ||||| |
Sbjct 1577 GGTGGGCGTCTTCT-CCCACATGTCGTACTGGAGGATGCCCTTGCTGACGGGGGAG---C 1522
Query 106138 CTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGC 106197
||| | || || |||| || | | | |||| ||| ||||| |||||||||| ||
Sbjct 1521 CTCGTACGTGTCGTAGGGGCCCAGCTCGGCGGCCAGTTCGCAGCTGGCCTCCAGGGCGGC 1462
Query 106198 GTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGC 106257
|| || ||||| |||||||| | |||| | || ||| || ||||| |
Sbjct 1461 GTAGTAGATGGTCTCAAAGATCTGGATGTTCAGCAGCTGGGCCTCGGGGCTTTCAAAGGG 1402
Query 106258 GTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTG 106317
||| || || || || | || || || || || || || | ||| || || |||||
Sbjct 1401 GTAACGCATCAGGATGAAGGCGTCGGCCAGGCCCTGGACGCCGATACCGATCGGCCTGTG 1342
Query 106318 TCGCATATTAGACTT-TCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGT 106376
||| | || |||| ||| | || |||| || || || | || |||| ||
Sbjct 1341 GCGCTTGTTGGACTGATCGGCCTCGGGCACCGGG-TAGAAGTTAATCTCTATGATCTTGT 1283
Query 106377 TTAGATTTTTGGTAACAATCTTTGTGATTTCA---TGAAGTTTTTCATAATCAAAAGTGC 106433
| || || || || ||| | || | || | ||||| | | |||||||| |
Sbjct 1282 TCAGGTTCTTC---ACGATCACTTTGGTCACAGACTCCAGTTTCTTGAAGTCAAAAGTCC 1226
Query 106434 GAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCT 106493
| ||| |||| ||| | || ||||| || |||| ||| || ||||| ||
Sbjct 1225 G---CTCGGGGGTGACGTACATGTTGAGAGCGATGGAGGCCAGATTACACACAGCGACCT 1169
Query 106494 CATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCA 106553
|||| | | ||| || | ||||| || || | |||| | ||| || || ||||
Sbjct 1168 CATCGCCACTGGAGTATTCAACGATTTCCGTGCAGAGGTTGCTGCACTTGATGGTTCCCA 1109
Query 106554 AATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCG 106613
|||| ||||| ||||| ||||||| || || ||||| |||||||| ||||| ||||
Sbjct 1108 GGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTACGGCGTGCCCG 1049
Query 106614 TCTCCGTCTGTGACTTGAGAATTGCCTTCCACACAT-CGGCGGCTGGTACAATGGCGTTG 106672
||||||||| |||| || || || | |||||| | | | | || || || |||
Sbjct 1048 ACTCCGTCTGGGACTCGATGATGGCGTGCCACACCTGCTGAGCCTTCACCACACGC-TTG 990
Query 106673 GCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCG-TC 106731
|||| |||||| ||| || | |||||||| ||||||||||| ||| | || ||
Sbjct 989 ACCCGGCCCTCCCGCTCATATTGGGTGTAGAGCTTCTCAAACTCCTCCCCC-CAGCACTC 931
Query 106732 GGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCA--ACC 106789
| || || || || | ||||| | |||||||| | || | ||| |||
Sbjct 930 GTCCAGCCCGGGGCTCTCGCTGGGACACATCAGAGACCAGT--CCTGGTTGCTCTCCACC 873
Query 106790 CGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCT 106836
| ||||||||| ||||| || ||||||| | | |||||||||||
Sbjct 872 CTCTTCATGAACAGGTCGGGGATCCACAAGCCGTAGAAGAGATCTCT 826
>seq504380
Length=601
Score = 107 bits (118), Expect = 2e-18
Identities = 265/391 (68%), Gaps = 22/391 (6%)
Strand=Plus/Plus
Query 9279 TCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATT--CG 9336
|||||||||||||| || ||| | |||||| | || || || || |||||||| |
Sbjct 14 TCAAAACCATCCATTTCGACCAATAATTGGTTCAGTGTCTGCTCACGCTCATCATTACCA 73
Query 9337 CTGGC-ATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACA 9395
| | | |||||| ||| | || || || |||||||| |||||||| ||||
Sbjct 74 CCGCCCATACCAGAGCCAC---GATGACGACCGACCGCATCAATTTCATCAATAAAGATG 130
Query 9396 ATACATGGT----TGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCC 9451
||||| || | |||| || | ||| || | |||||| || | | ||| ||
Sbjct 131 ATACAAGGCGCGCTCTTTTTAGCCTG----TTCGAACATATCGCGTACACGTGAGGCACC 186
Query 9452 CACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAG 9510
||||| ||||||||||| ||||| | | | | | |||| || ||| || || ||||
Sbjct 187 GACACCGACAAACATCTCAACAAAATCAGAACCTG-AGATTGAGAAGAACGGCACTTTAG 245
Query 9511 ATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGA 9570
|||||| |||||||||| ||| | | || ||||| |||||||| ||| | | |
Sbjct 246 CTTCACCAGCAATGGCTCTGGCTAACAAGGTTTTACCGGTACCTGGAGGACCTACCATTA 305
Query 9571 GGGCACCCCGTGGAATCTTGGCGCCA--CTTCCAAAGTATCTCTCA-GGTTGCTTGAGAA 9627
| ||| ||||||||| | || ||| ||| || || | ||| ||| || | | ||
Sbjct 306 AGATACCACGTGGAATCGTCGCACCAAGCTTGGTAA--ATTTATCAGGGTCGCGT-AAAA 362
Query 9628 AATCCACAATCTCTTCCAATTCATCTTTGGC 9658
| || || | || ||| ||| ||||||||
Sbjct 363 ACTCGACCACTTCGACCACTTCTTCTTTGGC 393
>seq103378
Length=1867
Score = 100 bits (110), Expect = 3e-16
Identities = 115/155 (74%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 106492 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCC 106551
|||||| || |||||||| | || ||||| |||| ||| || || || ||
Sbjct 1798 CTCATCTTTGCTGGTGTACTCCACTATCTCTGTGCACAGATTGCTGGATTTGATGGTTCC 1739
Query 106552 CAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 106611
|| ||||| ||||| ||||| |||||| || ||||||||||||||||| ||||| ||
Sbjct 1738 CAGATTCTGCTGGTTGCTCTTCCCGTTGCAGGCGTCCTTGTAGAGCATGTACGGCGTACC 1679
Query 106612 CGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA 106646
||| || |||||||||| || || || | |||||
Sbjct 1678 CGTTTCAGTCTGTGACTCGATGATGGCGTACCACA 1644
>seq448634
Length=577
Score = 89.7 bits (98), Expect = 6e-13
Identities = 220/326 (67%), Gaps = 16/326 (5%)
Strand=Plus/Minus
Query 9239 GCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGT 9298
||| || || || || || || | ||||||| | | | ||||||||||||| ||
Sbjct 545 GCGGTTAGTTGCAGCAATAACGATAATACCTTCGTTACCACCAAAACCATCCATTTCGAC 486
Query 9299 CAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATT--CGCTGGC-ATACCACCAGCACT 9355
| | |||||| | ||||| || ||||| || || ||| | | |||||| | |||
Sbjct 485 TAGCATTTGGTTTAGCGTTTGCTCACGTTCGTCGTTACCGCCGCCCATACCAGCGCCAC- 427
Query 9356 GCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACATGGT--TGATTTTC- 9412
||| || || ||||| || |||||||| |||| |||||| ||| || ||||
Sbjct 426 --GTTTACGACCTACAGCATCTATTTCATCAATAAAGATAATACAGGGTGATGCTTTTTT 369
Query 9413 -GCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCA 9471
|| || || || | ||| || || | |||||||||||||||||||| || |
Sbjct 368 AGCTTGC----TCGAACATATCTCGTACGCGAGATGCGCCCACACCAACAAACATTTCAA 313
Query 9472 CAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGG 9530
|||||| | | ||| || | | ||| || || || | |||||| |||| ||||
Sbjct 312 CAAAGTCCGAACCAGAA-ATAGTAAAGAACGGCACTTTTGCTTCACCAGCAACGGCTTTA 254
Query 9531 GCGAGAAGAGTCTTACCCGTACCTGG 9556
|| || | || ||||| ||||| ||
Sbjct 253 GCAAGTAACGTTTTACCTGTACCAGG 228
>seq28532
Length=8763
Score = 82.4 bits (90), Expect = 9e-11
Identities = 98/133 (74%), Gaps = 0/133 (0%)
Strand=Plus/Minus
Query 117293 CCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTCT 117352
||||||| | | ||| || ||||| |||||| || || ||||| | || | |||||
Sbjct 1945 CCTCATCCCTGCTAATCAGCTCATTGGAGAAGGTAAGCCCGGGCATTAAGCCTCTCTTCT 1886
Query 117353 TCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAACG 117412
||| |||| | || || ||| || |||||||||||||| |||||||| ||||| |
Sbjct 1885 TCAGCCAAAAGATGGCAGCGAACGAACCGGAGAAGAAGATTCCCTCCACGGCAGCAAAAG 1826
Query 117413 CAAAAAGGCGCTC 117425
| | || ||||||
Sbjct 1825 CCACAATGCGCTC 1813
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 586105348870480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |