Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq44246 176 5e-39 seq504380 107 2e-18 seq103378 100 3e-16 seq448634 89.7 6e-13 seq28532 82.4 9e-11 >seq44246 Length=4029 Score = 176 bits (194), Expect = 5e-39 Identities = 654/1007 (65%), Gaps = 26/1007 (3%) Strand=Plus/Minus Query 105841 CTTCATATCCTTGGACCAAAGACCAATCTTCTTGAGATCATTGACGAGATGCTTGTTGAC 105900 |||||| |||| | ||| || || ||| | | || || |||| ||||| |||||| Sbjct 1817 CTTCATCTCCTCGCCCCACAGCCCTCTCTCCGTCAGGTCCTTGAGCAGATGGGGGTTGAC 1758 Query 105901 AATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTGTAGGGTTCAAA 105960 ||| |||||||| | ||| | | |||||||| | ||||||| || | Sbjct 1757 GATCTGGAACTCTCCTGACAGGACCCGGCGGGTGTAGATGTTGCTGGTGTAGGCCTCGAT 1698 Query 105961 GCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAG 106020 | | || || || |||| ||| || ||||||||||| || ||||| || |||| || || Sbjct 1697 GGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGCAG 1638 Query 106021 ACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTAGTTGA- 106079 ||||| | | || | | ||| ||||| || | | |||||| | | Sbjct 1637 GCTGTTCCTCACGCCGTGCTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCACAGGTC 1578 Query 106080 GCTTGGTTTCACCTTCCCACATATCAAATTGAAGCAC-CCCTTGG-GACGTGGGAGAACC 106137 | | || || || ||||||| || | || || | |||||| |||| ||||| | Sbjct 1577 GGTGGGCGTCTTCT-CCCACATGTCGTACTGGAGGATGCCCTTGCTGACGGGGGAG---C 1522 Query 106138 CTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGC 106197 ||| | || || |||| || | | | |||| ||| ||||| |||||||||| || Sbjct 1521 CTCGTACGTGTCGTAGGGGCCCAGCTCGGCGGCCAGTTCGCAGCTGGCCTCCAGGGCGGC 1462 Query 106198 GTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGC 106257 || || ||||| |||||||| | |||| | || ||| || ||||| | Sbjct 1461 GTAGTAGATGGTCTCAAAGATCTGGATGTTCAGCAGCTGGGCCTCGGGGCTTTCAAAGGG 1402 Query 106258 GTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTG 106317 ||| || || || || | || || || || || || || | ||| || || ||||| Sbjct 1401 GTAACGCATCAGGATGAAGGCGTCGGCCAGGCCCTGGACGCCGATACCGATCGGCCTGTG 1342 Query 106318 TCGCATATTAGACTT-TCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGT 106376 ||| | || |||| ||| | || |||| || || || | || |||| || Sbjct 1341 GCGCTTGTTGGACTGATCGGCCTCGGGCACCGGG-TAGAAGTTAATCTCTATGATCTTGT 1283 Query 106377 TTAGATTTTTGGTAACAATCTTTGTGATTTCA---TGAAGTTTTTCATAATCAAAAGTGC 106433 | || || || || ||| | || | || | ||||| | | |||||||| | Sbjct 1282 TCAGGTTCTTC---ACGATCACTTTGGTCACAGACTCCAGTTTCTTGAAGTCAAAAGTCC 1226 Query 106434 GAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCT 106493 | ||| |||| ||| | || ||||| || |||| ||| || ||||| || Sbjct 1225 G---CTCGGGGGTGACGTACATGTTGAGAGCGATGGAGGCCAGATTACACACAGCGACCT 1169 Query 106494 CATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCA 106553 |||| | | ||| || | ||||| || || | |||| | ||| || || |||| Sbjct 1168 CATCGCCACTGGAGTATTCAACGATTTCCGTGCAGAGGTTGCTGCACTTGATGGTTCCCA 1109 Query 106554 AATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCG 106613 |||| ||||| ||||| ||||||| || || ||||| |||||||| ||||| |||| Sbjct 1108 GGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTACGGCGTGCCCG 1049 Query 106614 TCTCCGTCTGTGACTTGAGAATTGCCTTCCACACAT-CGGCGGCTGGTACAATGGCGTTG 106672 ||||||||| |||| || || || | |||||| | | | | || || || ||| Sbjct 1048 ACTCCGTCTGGGACTCGATGATGGCGTGCCACACCTGCTGAGCCTTCACCACACGC-TTG 990 Query 106673 GCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCG-TC 106731 |||| |||||| ||| || | |||||||| ||||||||||| ||| | || || Sbjct 989 ACCCGGCCCTCCCGCTCATATTGGGTGTAGAGCTTCTCAAACTCCTCCCCC-CAGCACTC 931 Query 106732 GGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCA--ACC 106789 | || || || || | ||||| | |||||||| | || | ||| ||| Sbjct 930 GTCCAGCCCGGGGCTCTCGCTGGGACACATCAGAGACCAGT--CCTGGTTGCTCTCCACC 873 Query 106790 CGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCT 106836 | ||||||||| ||||| || ||||||| | | ||||||||||| Sbjct 872 CTCTTCATGAACAGGTCGGGGATCCACAAGCCGTAGAAGAGATCTCT 826 >seq504380 Length=601 Score = 107 bits (118), Expect = 2e-18 Identities = 265/391 (68%), Gaps = 22/391 (6%) Strand=Plus/Plus Query 9279 TCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATT--CG 9336 |||||||||||||| || ||| | |||||| | || || || || |||||||| | Sbjct 14 TCAAAACCATCCATTTCGACCAATAATTGGTTCAGTGTCTGCTCACGCTCATCATTACCA 73 Query 9337 CTGGC-ATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACA 9395 | | | |||||| ||| | || || || |||||||| |||||||| |||| Sbjct 74 CCGCCCATACCAGAGCCAC---GATGACGACCGACCGCATCAATTTCATCAATAAAGATG 130 Query 9396 ATACATGGT----TGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCC 9451 ||||| || | |||| || | ||| || | |||||| || | | ||| || Sbjct 131 ATACAAGGCGCGCTCTTTTTAGCCTG----TTCGAACATATCGCGTACACGTGAGGCACC 186 Query 9452 CACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAG 9510 ||||| ||||||||||| ||||| | | | | | |||| || ||| || || |||| Sbjct 187 GACACCGACAAACATCTCAACAAAATCAGAACCTG-AGATTGAGAAGAACGGCACTTTAG 245 Query 9511 ATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGA 9570 |||||| |||||||||| ||| | | || ||||| |||||||| ||| | | | Sbjct 246 CTTCACCAGCAATGGCTCTGGCTAACAAGGTTTTACCGGTACCTGGAGGACCTACCATTA 305 Query 9571 GGGCACCCCGTGGAATCTTGGCGCCA--CTTCCAAAGTATCTCTCA-GGTTGCTTGAGAA 9627 | ||| ||||||||| | || ||| ||| || || | ||| ||| || | | || Sbjct 306 AGATACCACGTGGAATCGTCGCACCAAGCTTGGTAA--ATTTATCAGGGTCGCGT-AAAA 362 Query 9628 AATCCACAATCTCTTCCAATTCATCTTTGGC 9658 | || || | || ||| ||| |||||||| Sbjct 363 ACTCGACCACTTCGACCACTTCTTCTTTGGC 393 >seq103378 Length=1867 Score = 100 bits (110), Expect = 3e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 106492 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCC 106551 |||||| || |||||||| | || ||||| |||| ||| || || || || Sbjct 1798 CTCATCTTTGCTGGTGTACTCCACTATCTCTGTGCACAGATTGCTGGATTTGATGGTTCC 1739 Query 106552 CAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 106611 || ||||| ||||| ||||| |||||| || ||||||||||||||||| ||||| || Sbjct 1738 CAGATTCTGCTGGTTGCTCTTCCCGTTGCAGGCGTCCTTGTAGAGCATGTACGGCGTACC 1679 Query 106612 CGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA 106646 ||| || |||||||||| || || || | ||||| Sbjct 1678 CGTTTCAGTCTGTGACTCGATGATGGCGTACCACA 1644 >seq448634 Length=577 Score = 89.7 bits (98), Expect = 6e-13 Identities = 220/326 (67%), Gaps = 16/326 (5%) Strand=Plus/Minus Query 9239 GCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGT 9298 ||| || || || || || || | ||||||| | | | ||||||||||||| || Sbjct 545 GCGGTTAGTTGCAGCAATAACGATAATACCTTCGTTACCACCAAAACCATCCATTTCGAC 486 Query 9299 CAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATT--CGCTGGC-ATACCACCAGCACT 9355 | | |||||| | ||||| || ||||| || || ||| | | |||||| | ||| Sbjct 485 TAGCATTTGGTTTAGCGTTTGCTCACGTTCGTCGTTACCGCCGCCCATACCAGCGCCAC- 427 Query 9356 GCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACATGGT--TGATTTTC- 9412 ||| || || ||||| || |||||||| |||| |||||| ||| || |||| Sbjct 426 --GTTTACGACCTACAGCATCTATTTCATCAATAAAGATAATACAGGGTGATGCTTTTTT 369 Query 9413 -GCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCA 9471 || || || || | ||| || || | |||||||||||||||||||| || | Sbjct 368 AGCTTGC----TCGAACATATCTCGTACGCGAGATGCGCCCACACCAACAAACATTTCAA 313 Query 9472 CAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGG 9530 |||||| | | ||| || | | ||| || || || | |||||| |||| |||| Sbjct 312 CAAAGTCCGAACCAGAA-ATAGTAAAGAACGGCACTTTTGCTTCACCAGCAACGGCTTTA 254 Query 9531 GCGAGAAGAGTCTTACCCGTACCTGG 9556 || || | || ||||| ||||| || Sbjct 253 GCAAGTAACGTTTTACCTGTACCAGG 228 >seq28532 Length=8763 Score = 82.4 bits (90), Expect = 9e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 117293 CCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTCT 117352 ||||||| | | ||| || ||||| |||||| || || ||||| | || | ||||| Sbjct 1945 CCTCATCCCTGCTAATCAGCTCATTGGAGAAGGTAAGCCCGGGCATTAAGCCTCTCTTCT 1886 Query 117353 TCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAACG 117412 ||| |||| | || || ||| || |||||||||||||| |||||||| ||||| | Sbjct 1885 TCAGCCAAAAGATGGCAGCGAACGAACCGGAGAAGAAGATTCCCTCCACGGCAGCAAAAG 1826 Query 117413 CAAAAAGGCGCTC 117425 | | || |||||| Sbjct 1825 CCACAATGCGCTC 1813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 586105348870480