Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_015208.1
Length=39562
Score E
Sequences producing significant alignments: (Bits) Value
seq512931 470 4e-128
seq500082 241 3e-59
seq521066 203 8e-48
seq524349 179 9e-41
seq501937 167 6e-37
>seq512931
Length=538
Score = 470 bits (520), Expect = 4e-128
Identities = 427/538 (79%), Gaps = 0/538 (0%)
Strand=Plus/Plus
Query 37346 CCGGCCCGTCCTGACCACTCTCCGTCCGTGAAGTCCGTGGGCGTGACTGGCGGTATGACC 37405
|| || |||||||||||| || || |||||||||||||| || ||||||||||||||
Sbjct 1 CCTGCTCGTCCTGACCACAGCCCCTCGGTGAAGTCCGTGGGTGTTACTGGCGGTATGACT 60
Query 37406 GGTAGCCGTGCTGACATACTGATCGCGGACGACGTTGAGGTCCCCGGTAACTCCGGCACT 37465
||||||||||||||||| || || ||||| ||||||||||||||||| ||||| |||||
Sbjct 61 GGTAGCCGTGCTGACATCCTCATTGCGGATGACGTTGAGGTCCCCGGCAACTCTGGCACA 120
Query 37466 CAGTCGGCTCGTGACCATCTGGGCGAGCTGGTTAAGGAGTTCGATGCGATCCTGAAGCCG 37525
||||| || | || || || ||||||||||| ||||| ||||||||||||||||||||
Sbjct 121 CAGTCCGCAAGGGATCACCTTGGCGAGCTGGTAAAGGAATTCGATGCGATCCTGAAGCCT 180
Query 37526 GGCGGTACGATCATCTATCTGGGCACCCCTCAGACCGAGATGACCCTGTACCGTGAGCTG 37585
| ||||||||||||||| |||| ||||| |||||||| |||||||| ||| | || ||
Sbjct 181 GACGGTACGATCATCTACTTGGGAACCCCACAGACCGAAATGACCCTCTACAGGGAACTT 240
Query 37586 GAAGAGCGTGGCTATACCACGACCATCTGGCCTGCACGTTACCCGCGCGACCAAGCTGAC 37645
|| || || ||||| | ||||| |||||||||||||| ||||| || || ||||||
Sbjct 241 GAGGACCGCGGCTACTCGACGACGATCTGGCCTGCACGATACCCTCGGGATGTGGCTGAC 300
Query 37646 CTTGAGTCCTACTTCCAGCCTAAGCAGAACCGTAGCCGACTGGCTCCGAAGATGCTTGAG 37705
||||||||||||| || | ||| || || || |||| | | ||||| ||
Sbjct 301 CTTGAGTCCTACTGGCACGCCAAGGGCAAGCGCTCACGTCTGGACCTTACCATGCTCAAG 360
Query 37706 GAACTGGAGGCCGACCCACGGCTGTTCGGTATGCCTTCCGACCCTGTTCGATTCGATGAA 37765
|| ||||| | |||| ||||||| | | |||| | |||||| |||||||||||||
Sbjct 361 GAGCTGGAAGACGACGAGAAGCTGTTCTGGAAGCCTACAGACCCTATTCGATTCGATGAT 420
Query 37766 GAGGACCTCAGAGAGCGTGAGCTGTCGTACGGTAAGGGCGGCTTCGCGTTGCAGTTCATG 37825
|| ||||| | ||||| || || || || || ||||| |||||||| | |||||||||
Sbjct 421 GAAGACCTGCGTGAGCGCGAACTCTCATATGGCAAGGGTGGCTTCGCTCTACAGTTCATG 480
Query 37826 CTCAACCCGAACCTCAGCGACATCGCTAAGTACCCTCTGAAGCTGCGAGATTTCATCG 37883
|||||||||||||| |||||||||| |||||||| |||||||||| |||| ||||
Sbjct 481 CTCAACCCGAACCTTAGCGACATCGAGAAGTACCCGTTGAAGCTGCGTGATTGGATCG 538
>seq500082
Length=313
Score = 241 bits (266), Expect = 3e-59
Identities = 240/311 (77%), Gaps = 0/311 (0%)
Strand=Plus/Minus
Query 5362 GAAGACGGCATCAAGTGGCTTATGATCCACGGTGCGAACACGGCAGGCGTCGATAAGGTA 5421
||||| || || | ||||| ||||| ||||| || ||||| || || |||||||||||
Sbjct 312 GAAGATGGTATTCAATGGCTCATGATTCACGGGGCCAACACTGCTGGGGTCGATAAGGTC 253
Query 5422 CCTTTCGATGAACGACAACAATGGGTTCGAGACAATGAACGAACCATCCTACAGTGCGCT 5481
||||||||| |||| | ||||||||||| ||||||||| || ||||| | ||||||
Sbjct 252 CCTTTCGATCAACGCAAGCAATGGGTTCGTGACAATGAATCGACTATCCTCCGATGCGCT 193
Query 5482 GAAGACCCACTTACACACACTGAGTGGATGTCAATGGATAGTCCCTTCTGCTTCCTTGCC 5541
|||||||| || || ||||| ||||||||| ||||| |||||||| ||| | ||
Sbjct 192 GAAGACCCGCTCACTCACACCGAGTGGATGGGGATGGACTCGCCCTTCTGTTTCTTGGCG 133
Query 5542 TTCTGTTTTGAATGGGCTGGAGTCGTTAAAGATGGTCCGAACCACGTATCTGCTCTCCCC 5601
||||| || || ||||| || |||||| ||||| | ||| ||| ||||| ||
Sbjct 132 TTCTGCTTCGAGTGGGCCGGTGTCGTTCGCGATGGAGCTGCACACCGATCCGCTCTACCA 73
Query 5602 ATTGCTTTTGATGGGAGTTGCTCGGGCATTCAGCACTTTTCTGCAATGCTCCGAGACGAA 5661
|| |||||||| || || || ||||| || ||||| |||||||| |||||||| ||||||
Sbjct 72 ATCGCTTTTGACGGAAGCTGTTCGGGTATCCAGCATTTTTCTGCCATGCTCCGGGACGAA 13
Query 5662 ACAGGCGGTCG 5672
||||| || ||
Sbjct 12 ACAGGGGGACG 2
>seq521066
Length=280
Score = 203 bits (224), Expect = 8e-48
Identities = 215/280 (77%), Gaps = 5/280 (2%)
Strand=Plus/Plus
Query 19967 CATGGAGGCCAACTCCTACAGGACCACGCTGCACGAACTGATCCGTCAGTTGGTCGTGGC 20026
|||||| |||||| ||| | |||||| ||||||| ||||| ||||||||||| | ||
Sbjct 1 CATGGAAGCCAACAGTTACCGCACCACGTTGCACGAGCTGATTCGTCAGTTGGTGATCGC 60
Query 20027 TGGCAACGCTCTGCTGTACCTACCGAACCCTGAAGGT---ACACAAGGCTCCCCGATGAA 20083
||| | ||||||||||| ||| ||||| ||| || ||||| ||| |||||
Sbjct 61 TGGGTCTGGCCTGCTGTACCTTCCGCCTCCTGAGGGTTCGACCCAAGGGAGCCCTATGAA 120
Query 20084 GATGTACACCATGCACAACTACGTCTGCCAGCGCGACTCCTTCGGGAACGTCTTGCAGAT 20143
| | ||||| |||||||| |||| ||| || |||||||||||||||||| | |||||
Sbjct 121 GCTCTACACGCTGCACAACCACGTAGTCCAACGGGACTCCTTCGGGAACGTCCTACAGAT 180
Query 20144 CGTGACGTTGGACAAGGTGGCCTTCGCGGCACTCCCAGAGGACGTACGGTCCAAGCTGGA 20203
||| ||| | |||||||||||||| ||||| || || || ||||| |||||||| || ||
Sbjct 181 CGTTACGCTCGACAAGGTGGCCTTTGCGGCCCTTCCTGAAGACGTGCGGTCCAAACTTGA 240
Query 20204 CGGTGA-CAGGACCCCTGACGAAGAGGTTGAGGTCTACAC 20242
||| || || | ||| || |||||| | || |||| |||
Sbjct 241 CGGAGAGCATAAGCCC-GATGAAGAGATCGAAGTCTTCAC 279
>seq524349
Length=315
Score = 179 bits (198), Expect = 9e-41
Identities = 208/278 (75%), Gaps = 8/278 (3%)
Strand=Plus/Plus
Query 13718 GACCAGATCTGGAACGCTGAGAAGTACGTCCCGGATGGCGTGGTCTCGGCTAAGAGCCTC 13777
||||| | |||||||| ||||||||||||| ||||| ||||||||||| ||| |||
Sbjct 1 GACCAAGTGTGGAACGCCCAGAAGTACGTCCCTGATGGTGTGGTCTCGGCGAAGTACCTT 60
Query 13778 AAGGAGCGCATCAAGGCTAAGAAGCTGGCCGCATCGCTACCACTGGTCGCGCCATACAAG 13837
|||| |||||||| | |||||| | | | ||| | || |||| | || || ||
Sbjct 61 AAGGGCCGCATCAAAGAAAAGAAGGTTATCACTTCGATGCCTTTGGTGGGACCTCACGAG 120
Query 13838 CTCAAGAAAATGACCAAGGACATGCGTGAAGGGGAGGTAATCCTCATCACTTCGGGCTCC 13897
|| ||||||||| |||| || ||||| || || || || |||| |||||||||
Sbjct 121 CTGTCCCGCATGACCAAGAACATCCGCGAAGGCGAAGTCATTCTGGTCACCTCGGGCTCC 180
Query 13898 GGCTCCGGCAAGTCCACGTTCGTTCGACAGAACGTTCACAACCTGTTCTCCAATTCCGGC 13957
||||| ||||||||||||||||| ||||||||| ||||| || |||| | |||
Sbjct 181 GGCTCGGGCAAGTCCACGTTCGTCCGACAGAACACCTACAAC--GTCTTCCA--TGAGGC 236
Query 13958 ----ATCCCTGTTGGGGTTGCGATGCTTGAGGAATCCG 13991
||||| || || ||||||||||||||||||||||
Sbjct 237 GACGATCCCGGTGGGCGTTGCGATGCTTGAGGAATCCG 274
>seq501937
Length=338
Score = 167 bits (184), Expect = 6e-37
Identities = 207/274 (76%), Gaps = 12/274 (4%)
Strand=Plus/Plus
Query 33614 CAAGTTCCGGCTGCTGGCTGGGCACTCTCGGCTGGACAAGTCGCACACTCTGCGGCTGGC 33673
||||| |||| || ||||| ||| | ||||| || | | |||||| |||||||
Sbjct 3 CAAGTACCGGGTGTCTCATGGGCTCTCGCTGCTGGTCAGGCGGGGCACTCTCTGGCTGGC 62
Query 33674 TCTGCGGCAAC-AACGGATCGTCGCGGTGACCAAGAGTACATGCAGAGCCTCTACAACGG 33732
| |||| | | ||||| ||| || ||||||||||||||| || |||||||||||
Sbjct 63 TTGGCGGGATCTAACGG-TCGCCGTCAGGACCAAGAGTACATGACCAGTCTCTACAACGG 121
Query 33733 ACTCCGTAACGTGATC--CCTAACGACCCGGCCTCCCAGTTCATCCTGATGAAGATCATG 33790
|||||| | |||| ||||||||||||||||| |||||| |||||||||||||||||
Sbjct 122 GCTCCGT---GGGATCATCCTAACGACCCGGCCTCTCAGTTCCTCCTGATGAAGATCATG 178
Query 33791 G-AGAGCGAGGGGATCGAGGCGCGATAAAACCCCACACAATAGATAGGGCGCTTACATAG 33849
| ||||| |||| ||||| || || ||||||| | ||| || | ||| |||| || ||
Sbjct 179 GAAGAGC-AGGGTATCGAAGCACGGTAAAACCACTCAC-CTATACCGGGAGCTTGCACAG 236
Query 33850 GCCCTCCATTTTCATAAGGAGAACACAATGGCAC 33883
| || ||| |||||||||| | | |||||||
Sbjct 237 --CTCCCCTTTCCATAAGGAGACCTCTATGGCAC 268
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 125687542240176
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |