Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_015208.1 Length=39562 Score E Sequences producing significant alignments: (Bits) Value seq512931 470 4e-128 seq500082 241 3e-59 seq521066 203 8e-48 seq524349 179 9e-41 seq501937 167 6e-37 >seq512931 Length=538 Score = 470 bits (520), Expect = 4e-128 Identities = 427/538 (79%), Gaps = 0/538 (0%) Strand=Plus/Plus Query 37346 CCGGCCCGTCCTGACCACTCTCCGTCCGTGAAGTCCGTGGGCGTGACTGGCGGTATGACC 37405 || || |||||||||||| || || |||||||||||||| || |||||||||||||| Sbjct 1 CCTGCTCGTCCTGACCACAGCCCCTCGGTGAAGTCCGTGGGTGTTACTGGCGGTATGACT 60 Query 37406 GGTAGCCGTGCTGACATACTGATCGCGGACGACGTTGAGGTCCCCGGTAACTCCGGCACT 37465 ||||||||||||||||| || || ||||| ||||||||||||||||| ||||| ||||| Sbjct 61 GGTAGCCGTGCTGACATCCTCATTGCGGATGACGTTGAGGTCCCCGGCAACTCTGGCACA 120 Query 37466 CAGTCGGCTCGTGACCATCTGGGCGAGCTGGTTAAGGAGTTCGATGCGATCCTGAAGCCG 37525 ||||| || | || || || ||||||||||| ||||| |||||||||||||||||||| Sbjct 121 CAGTCCGCAAGGGATCACCTTGGCGAGCTGGTAAAGGAATTCGATGCGATCCTGAAGCCT 180 Query 37526 GGCGGTACGATCATCTATCTGGGCACCCCTCAGACCGAGATGACCCTGTACCGTGAGCTG 37585 | ||||||||||||||| |||| ||||| |||||||| |||||||| ||| | || || Sbjct 181 GACGGTACGATCATCTACTTGGGAACCCCACAGACCGAAATGACCCTCTACAGGGAACTT 240 Query 37586 GAAGAGCGTGGCTATACCACGACCATCTGGCCTGCACGTTACCCGCGCGACCAAGCTGAC 37645 || || || ||||| | ||||| |||||||||||||| ||||| || || |||||| Sbjct 241 GAGGACCGCGGCTACTCGACGACGATCTGGCCTGCACGATACCCTCGGGATGTGGCTGAC 300 Query 37646 CTTGAGTCCTACTTCCAGCCTAAGCAGAACCGTAGCCGACTGGCTCCGAAGATGCTTGAG 37705 ||||||||||||| || | ||| || || || |||| | | ||||| || Sbjct 301 CTTGAGTCCTACTGGCACGCCAAGGGCAAGCGCTCACGTCTGGACCTTACCATGCTCAAG 360 Query 37706 GAACTGGAGGCCGACCCACGGCTGTTCGGTATGCCTTCCGACCCTGTTCGATTCGATGAA 37765 || ||||| | |||| ||||||| | | |||| | |||||| ||||||||||||| Sbjct 361 GAGCTGGAAGACGACGAGAAGCTGTTCTGGAAGCCTACAGACCCTATTCGATTCGATGAT 420 Query 37766 GAGGACCTCAGAGAGCGTGAGCTGTCGTACGGTAAGGGCGGCTTCGCGTTGCAGTTCATG 37825 || ||||| | ||||| || || || || || ||||| |||||||| | ||||||||| Sbjct 421 GAAGACCTGCGTGAGCGCGAACTCTCATATGGCAAGGGTGGCTTCGCTCTACAGTTCATG 480 Query 37826 CTCAACCCGAACCTCAGCGACATCGCTAAGTACCCTCTGAAGCTGCGAGATTTCATCG 37883 |||||||||||||| |||||||||| |||||||| |||||||||| |||| |||| Sbjct 481 CTCAACCCGAACCTTAGCGACATCGAGAAGTACCCGTTGAAGCTGCGTGATTGGATCG 538 >seq500082 Length=313 Score = 241 bits (266), Expect = 3e-59 Identities = 240/311 (77%), Gaps = 0/311 (0%) Strand=Plus/Minus Query 5362 GAAGACGGCATCAAGTGGCTTATGATCCACGGTGCGAACACGGCAGGCGTCGATAAGGTA 5421 ||||| || || | ||||| ||||| ||||| || ||||| || || ||||||||||| Sbjct 312 GAAGATGGTATTCAATGGCTCATGATTCACGGGGCCAACACTGCTGGGGTCGATAAGGTC 253 Query 5422 CCTTTCGATGAACGACAACAATGGGTTCGAGACAATGAACGAACCATCCTACAGTGCGCT 5481 ||||||||| |||| | ||||||||||| ||||||||| || ||||| | |||||| Sbjct 252 CCTTTCGATCAACGCAAGCAATGGGTTCGTGACAATGAATCGACTATCCTCCGATGCGCT 193 Query 5482 GAAGACCCACTTACACACACTGAGTGGATGTCAATGGATAGTCCCTTCTGCTTCCTTGCC 5541 |||||||| || || ||||| ||||||||| ||||| |||||||| ||| | || Sbjct 192 GAAGACCCGCTCACTCACACCGAGTGGATGGGGATGGACTCGCCCTTCTGTTTCTTGGCG 133 Query 5542 TTCTGTTTTGAATGGGCTGGAGTCGTTAAAGATGGTCCGAACCACGTATCTGCTCTCCCC 5601 ||||| || || ||||| || |||||| ||||| | ||| ||| ||||| || Sbjct 132 TTCTGCTTCGAGTGGGCCGGTGTCGTTCGCGATGGAGCTGCACACCGATCCGCTCTACCA 73 Query 5602 ATTGCTTTTGATGGGAGTTGCTCGGGCATTCAGCACTTTTCTGCAATGCTCCGAGACGAA 5661 || |||||||| || || || ||||| || ||||| |||||||| |||||||| |||||| Sbjct 72 ATCGCTTTTGACGGAAGCTGTTCGGGTATCCAGCATTTTTCTGCCATGCTCCGGGACGAA 13 Query 5662 ACAGGCGGTCG 5672 ||||| || || Sbjct 12 ACAGGGGGACG 2 >seq521066 Length=280 Score = 203 bits (224), Expect = 8e-48 Identities = 215/280 (77%), Gaps = 5/280 (2%) Strand=Plus/Plus Query 19967 CATGGAGGCCAACTCCTACAGGACCACGCTGCACGAACTGATCCGTCAGTTGGTCGTGGC 20026 |||||| |||||| ||| | |||||| ||||||| ||||| ||||||||||| | || Sbjct 1 CATGGAAGCCAACAGTTACCGCACCACGTTGCACGAGCTGATTCGTCAGTTGGTGATCGC 60 Query 20027 TGGCAACGCTCTGCTGTACCTACCGAACCCTGAAGGT---ACACAAGGCTCCCCGATGAA 20083 ||| | ||||||||||| ||| ||||| ||| || ||||| ||| ||||| Sbjct 61 TGGGTCTGGCCTGCTGTACCTTCCGCCTCCTGAGGGTTCGACCCAAGGGAGCCCTATGAA 120 Query 20084 GATGTACACCATGCACAACTACGTCTGCCAGCGCGACTCCTTCGGGAACGTCTTGCAGAT 20143 | | ||||| |||||||| |||| ||| || |||||||||||||||||| | ||||| Sbjct 121 GCTCTACACGCTGCACAACCACGTAGTCCAACGGGACTCCTTCGGGAACGTCCTACAGAT 180 Query 20144 CGTGACGTTGGACAAGGTGGCCTTCGCGGCACTCCCAGAGGACGTACGGTCCAAGCTGGA 20203 ||| ||| | |||||||||||||| ||||| || || || ||||| |||||||| || || Sbjct 181 CGTTACGCTCGACAAGGTGGCCTTTGCGGCCCTTCCTGAAGACGTGCGGTCCAAACTTGA 240 Query 20204 CGGTGA-CAGGACCCCTGACGAAGAGGTTGAGGTCTACAC 20242 ||| || || | ||| || |||||| | || |||| ||| Sbjct 241 CGGAGAGCATAAGCCC-GATGAAGAGATCGAAGTCTTCAC 279 >seq524349 Length=315 Score = 179 bits (198), Expect = 9e-41 Identities = 208/278 (75%), Gaps = 8/278 (3%) Strand=Plus/Plus Query 13718 GACCAGATCTGGAACGCTGAGAAGTACGTCCCGGATGGCGTGGTCTCGGCTAAGAGCCTC 13777 ||||| | |||||||| ||||||||||||| ||||| ||||||||||| ||| ||| Sbjct 1 GACCAAGTGTGGAACGCCCAGAAGTACGTCCCTGATGGTGTGGTCTCGGCGAAGTACCTT 60 Query 13778 AAGGAGCGCATCAAGGCTAAGAAGCTGGCCGCATCGCTACCACTGGTCGCGCCATACAAG 13837 |||| |||||||| | |||||| | | | ||| | || |||| | || || || Sbjct 61 AAGGGCCGCATCAAAGAAAAGAAGGTTATCACTTCGATGCCTTTGGTGGGACCTCACGAG 120 Query 13838 CTCAAGAAAATGACCAAGGACATGCGTGAAGGGGAGGTAATCCTCATCACTTCGGGCTCC 13897 || ||||||||| |||| || ||||| || || || || |||| ||||||||| Sbjct 121 CTGTCCCGCATGACCAAGAACATCCGCGAAGGCGAAGTCATTCTGGTCACCTCGGGCTCC 180 Query 13898 GGCTCCGGCAAGTCCACGTTCGTTCGACAGAACGTTCACAACCTGTTCTCCAATTCCGGC 13957 ||||| ||||||||||||||||| ||||||||| ||||| || |||| | ||| Sbjct 181 GGCTCGGGCAAGTCCACGTTCGTCCGACAGAACACCTACAAC--GTCTTCCA--TGAGGC 236 Query 13958 ----ATCCCTGTTGGGGTTGCGATGCTTGAGGAATCCG 13991 ||||| || || |||||||||||||||||||||| Sbjct 237 GACGATCCCGGTGGGCGTTGCGATGCTTGAGGAATCCG 274 >seq501937 Length=338 Score = 167 bits (184), Expect = 6e-37 Identities = 207/274 (76%), Gaps = 12/274 (4%) Strand=Plus/Plus Query 33614 CAAGTTCCGGCTGCTGGCTGGGCACTCTCGGCTGGACAAGTCGCACACTCTGCGGCTGGC 33673 ||||| |||| || ||||| ||| | ||||| || | | |||||| ||||||| Sbjct 3 CAAGTACCGGGTGTCTCATGGGCTCTCGCTGCTGGTCAGGCGGGGCACTCTCTGGCTGGC 62 Query 33674 TCTGCGGCAAC-AACGGATCGTCGCGGTGACCAAGAGTACATGCAGAGCCTCTACAACGG 33732 | |||| | | ||||| ||| || ||||||||||||||| || ||||||||||| Sbjct 63 TTGGCGGGATCTAACGG-TCGCCGTCAGGACCAAGAGTACATGACCAGTCTCTACAACGG 121 Query 33733 ACTCCGTAACGTGATC--CCTAACGACCCGGCCTCCCAGTTCATCCTGATGAAGATCATG 33790 |||||| | |||| ||||||||||||||||| |||||| ||||||||||||||||| Sbjct 122 GCTCCGT---GGGATCATCCTAACGACCCGGCCTCTCAGTTCCTCCTGATGAAGATCATG 178 Query 33791 G-AGAGCGAGGGGATCGAGGCGCGATAAAACCCCACACAATAGATAGGGCGCTTACATAG 33849 | ||||| |||| ||||| || || ||||||| | ||| || | ||| |||| || || Sbjct 179 GAAGAGC-AGGGTATCGAAGCACGGTAAAACCACTCAC-CTATACCGGGAGCTTGCACAG 236 Query 33850 GCCCTCCATTTTCATAAGGAGAACACAATGGCAC 33883 | || ||| |||||||||| | | ||||||| Sbjct 237 --CTCCCCTTTCCATAAGGAGACCTCTATGGCAC 268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 125687542240176