Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_015251.1 Length=235229 Score E Sequences producing significant alignments: (Bits) Value seq506238 122 1e-22 seq511551 95.1 2e-14 seq296889 84.2 3e-11 >seq506238 Length=275 Score = 122 bits (134), Expect = 1e-22 Identities = 130/172 (76%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 27983 CTGTAAAAGTACGAGAAACAACATCGCGTTGTTGTTCTGGGGTTAGAGAATTAAATCTAA 28042 ||||||| ||||| | | || || | ||||||||||| |||| || ||||| | | Sbjct 50 CTGTAAATGTACGTGTTAATACGTCTTGCTGTTGTTCTGGTGTTAATGAGTTAAAACGCA 109 Query 28043 CGGCATAACCAGATACTCGAATTGTCAATTGTGGGTATTTTTCTGGAAATTTAATTGCAT 28102 | || ||||| ||||| ||||| || |||||||| |||||||| || ||||| |||| Sbjct 110 CTGCGTAACCTGATACACGAATAGTTAATTGTGGATATTTTTCAGGGTGTTTAACAGCAT 169 Query 28103 CTTCTAAAGTTTCTTTATTCAAGACATTTACATTTAAATGTTGACCCCCTTC 28154 |||| || ||||| | || ||||| || |||||||||||||| ||||| Sbjct 170 CTTCCAATGTTTCACGACGTAACACATTCACGTTTAAATGTTGACCACCTTC 221 >seq511551 Length=634 Score = 95.1 bits (104), Expect = 2e-14 Identities = 227/338 (67%), Gaps = 4/338 (1%) Strand=Plus/Minus Query 29785 TTATAAGAACCTGTGACCTTTACCACTTGATCGTAACTCATAATATCCGGATATATACGC 29844 ||| || ||| || |||| ||| | | |||||| | |||||||| || || |||||| Sbjct 384 TTAAAACCACCAGTAACCTCTACAATCTTATCGTAGTTGATAATATCAGGGTACATACGC 325 Query 29845 TTAGACGAACACTCAAGAGCAAGTTGTTTTATATCGTAATGAGGATCCCAAGGATTCAGA 29904 ||| | |||||| ||||| | ||||| |||| || | || || | || | Sbjct 324 TTACTGGCACACTCTAGAGCTAACTGTTTAATATTATAGTTTGGGTCTTCCTGTTTAAAG 265 Query 29905 TTAAGACCGTCTTTAAGAGTGAATACAAGTTTAGGAAATACAGCAGT-TTCTTTATCTTC 29963 || | ||||||||||| ||| | | ||| ||||| ||||| || || ||||| | | Sbjct 264 TTGACACCGTCTTTAATAGTTAGGATAAGCTTAGGGAATACCGCTGTCCTCTTT-GATGC 206 Query 29964 ACCAAGTCCATCAATACGGACTCTCAA-GATCATTTCCTGAACTAGTTTAGCCTCTGGAC 30022 ||| | || | |||||| || ||||| ||| || ||||| ||| |||| ||| || Sbjct 205 ACCTAAGCCTTTAATACGCAC-CTCAAGGATGGATTTCTGAATTAGCTTAGACTCCCAAC 147 Query 30023 TAGAACCAATACCAAACGTAACGGTTGTGAATGGAGTCTGACCTTGACCGGTAGTTAATG 30082 || ||| | |||||| || || || || | || || | | || ||| | Sbjct 146 AAGTACCTAAACCAAAACCTACCGTACAAAAGGGGCTTTGTCCATTTGCTGTGTGTAAGG 87 Query 30083 AGTTCAATTGATACTCAAGCGTTTGGATAGAATCATAA 30120 ||| | || |||||||| |||||| || ||||||| Sbjct 86 TGTTAATTTCGTACTCAAGACTTTGGAAAGCATCATAA 49 >seq296889 Length=3494 Score = 84.2 bits (92), Expect = 3e-11 Identities = 69/83 (83%), Gaps = 1/83 (1%) Strand=Plus/Minus Query 112288 GGATGTGGTGAAATTGGCAGACACACCAGATTTAGGTTCTGGCG-CTTATAGCGTGACGG 112346 |||||||||| |||||| |||| ||||||||||||||||||||| | | | |||| | Sbjct 141 GGATGTGGTGGAATTGGTAGACGCACCAGATTTAGGTTCTGGCGCCGCAAGGTGTGAGAG 82 Query 112347 TTCGAGTCCGTCCATCCCCACCA 112369 |||||||| |||| |||||||| Sbjct 81 TTCGAGTCTCTCCAGCCCCACCA 59 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 747661108404880