Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_015264.1 Length=40973 Score E Sequences producing significant alignments: (Bits) Value seq512931 610 2e-170 seq518992 365 1e-96 seq501937 318 2e-82 seq521066 311 2e-80 seq524349 248 2e-61 seq500082 201 3e-47 seq489868 140 8e-29 seq498418 136 1e-27 >seq512931 Length=538 Score = 610 bits (676), Expect = 2e-170 Identities = 458/538 (85%), Gaps = 0/538 (0%) Strand=Plus/Plus Query 36313 CCTGCGCGTCCTGACCACTCGCCCTCGGTGAAGTCTGTGGGTGTGACTGGTGGTATGACT 36372 ||||| |||||||||||| |||||||||||||| |||||||| ||||| ||||||||| Sbjct 1 CCTGCTCGTCCTGACCACAGCCCCTCGGTGAAGTCCGTGGGTGTTACTGGCGGTATGACT 60 Query 36373 GGTAGCCGTGCTGACATCCTCATCGCGGACGACGTGGAAGTACCGGGCAACTCTGGGACG 36432 ||||||||||||||||||||||| ||||| ||||| || || || ||||||||||| || Sbjct 61 GGTAGCCGTGCTGACATCCTCATTGCGGATGACGTTGAGGTCCCCGGCAACTCTGGCACA 120 Query 36433 CAATCTGCACGGGACCACCTCGGTGAACTCGTAAAGGAATTCGATGCGATCCTGAAGCCG 36492 || || ||| |||| ||||| || || || ||||||||||||||||||||||||||||| Sbjct 121 CAGTCCGCAAGGGATCACCTTGGCGAGCTGGTAAAGGAATTCGATGCGATCCTGAAGCCT 180 Query 36493 GACGGCACGATCATCTACCTCGGGACCCCACAGACTGAAATGACCCTTTACCGGGAACTT 36552 ||||| |||||||||||| | || ||||||||||| ||||||||||| ||| |||||||| Sbjct 181 GACGGTACGATCATCTACTTGGGAACCCCACAGACCGAAATGACCCTCTACAGGGAACTT 240 Query 36553 GAGGACCGTGGCTACTCGACGACTATCTGGCCTGCACGATACCCTCGGGACGTGGCTGAC 36612 |||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||| Sbjct 241 GAGGACCGCGGCTACTCGACGACGATCTGGCCTGCACGATACCCTCGGGATGTGGCTGAC 300 Query 36613 CTTGAGTCCTACTTCCATGCCAAGGGCAATCGTTCGCGACTTGACCCAACCATGCTGGCA 36672 ||||||||||||| || ||||||||||| || || || || |||| |||||||| Sbjct 301 CTTGAGTCCTACTGGCACGCCAAGGGCAAGCGCTCACGTCTGGACCTTACCATGCTCAAG 360 Query 36673 GAACTTGAGGCCGACTCACGGCTCTTCTGGAAGCCCACAGACCCTGTGCGGTTCGATGAT 36732 || || || | |||| ||| ||||||||||| ||||||||| | || ||||||||| Sbjct 361 GAGCTGGAAGACGACGAGAAGCTGTTCTGGAAGCCTACAGACCCTATTCGATTCGATGAT 420 Query 36733 GAGGACCTTCGGGAACGTGAGCTGTCATATGGTAAGGGTGGCTTTGCATTGCAGTTCATG 36792 || ||||| || || || || || |||||||| ||||||||||| || | ||||||||| Sbjct 421 GAAGACCTGCGTGAGCGCGAACTCTCATATGGCAAGGGTGGCTTCGCTCTACAGTTCATG 480 Query 36793 CTCAACCCAAACCTCAGCGACATCGAGAAGTACCCGCTCAAGCTACGTGACTGGATCG 36850 |||||||| ||||| ||||||||||||||||||||| | ||||| ||||| ||||||| Sbjct 481 CTCAACCCGAACCTTAGCGACATCGAGAAGTACCCGTTGAAGCTGCGTGATTGGATCG 538 >seq518992 Length=261 Score = 365 bits (404), Expect = 1e-96 Identities = 237/260 (91%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 9577 CAAAGCTGCCCCTTACGCGGCCATTCAGAAGCCCGACTTCGGCACCACCGAGTTCCCGCA 9636 ||| |||||||| || ||||| || || |||||||||||||||||||| |||||||| || Sbjct 260 CAAGGCTGCCCCATATGCGGCGATCCAAAAGCCCGACTTCGGCACCACTGAGTTCCCACA 201 Query 9637 ACCACGCGGCGAGTACAAGGTGAACCTCATCGTGCCCCTGAAGGATGCACAGGCTGACAT 9696 ||| || |||||||||||||||||||| |||||| || ||||||||||||| |||||||| Sbjct 200 ACCTCGTGGCGAGTACAAGGTGAACCTGATCGTGTCCTTGAAGGATGCACAAGCTGACAT 141 Query 9697 CAAGCGCATCACCAAGATTTACGAAGAGTCCTACGCCGAGTTCTTGGCTGAGCATGAAGC 9756 |||||||||||||||||||||||| || ||||||||||||||||||||||| || ||||| Sbjct 140 CAAGCGCATCACCAAGATTTACGAGGACTCCTACGCCGAGTTCTTGGCTGAACACGAAGC 81 Query 9757 GAACCCACCAAAGGTCGCTCCGGGCAAGCGTCCAGTGCCGGTCCGTCAAGGTGACCTTCC 9816 |||||| |||||||||||| | ||||||||||| || ||||||||||||||||||||||| Sbjct 80 GAACCCGCCAAAGGTCGCTGCTGGCAAGCGTCCCGTACCGGTCCGTCAAGGTGACCTTCC 21 Query 9817 GTTCTTCGAGGACGGCAACG 9836 |||||||||||||||||||| Sbjct 20 GTTCTTCGAGGACGGCAACG 1 >seq501937 Length=338 Score = 318 bits (352), Expect = 2e-82 Identities = 280/345 (81%), Gaps = 7/345 (2%) Strand=Plus/Plus Query 33124 ACCAAGTACCGGGTGCCTCATGGGCGCTCTCTGCTGGTCAAGCTGGACACAGTGCGATTG 33183 ||||||||||||||| ||||||||| ||| |||||||||| || || ||| | | || Sbjct 1 ACCAAGTACCGGGTGTCTCATGGGCTCTCGCTGCTGGTCAGGCGGGGCACTCTCTGGCTG 60 Query 33184 GCTTGGCGGGATCTTCGGGTCGCCGTCAGGATCAAGAGTACATGACCAGCCTCTACAACG 33243 |||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||| Sbjct 61 GCTTGGCGGGATCTAACGGTCGCCGTCAGGACCAAGAGTACATGACCAGTCTCTACAACG 120 Query 33244 GCCTGCGCGGGATCATCCCTAACGACCCAGCGTCTCAGTTCCTCCTGATGAAAATCATGG 33303 | || || |||||||| ||||||||||| || |||||||||||||||||||| ||||||| Sbjct 121 GGCTCCGTGGGATCAT-CCTAACGACCCGGCCTCTCAGTTCCTCCTGATGAAGATCATGG 179 Query 33304 AAGAGCAGGGCATTGAGGCACGGTAAAACCCCTCACCTAAACAGGGAGTGCTTACACAGG 33363 |||||||||| || || ||||||||||||| |||||||| || |||| |||| |||| | Sbjct 180 AAGAGCAGGGTATCGAAGCACGGTAAAACCACTCACCTATACCGGGA--GCTTGCACA-G 236 Query 33364 CTCCCATTCATTTCTTAAGGAGGCCCACATGGCTGACGCTCCAAAGACAACGATCACGTA 33423 ||||| | || | ||||||| || ||||| |||||||||||| | |||| Sbjct 237 CTCCC---CTTTCCATAAGGAGACCTCTATGGCACTCGCTCCAAAGACTGTCTTGGCGTA 293 Query 33424 TCCTCTTGACGGATCGAACAAAGACTTCCCGATCCCTTTCGAGTA 33468 ||| |||||||| |||| ||||||| |||||| || || || Sbjct 294 TCCGCTTGACGGTGCGAATCGAGACTTCGTGATCCCCTTTGAATA 338 >seq521066 Length=280 Score = 311 bits (344), Expect = 2e-80 Identities = 237/280 (85%), Gaps = 0/280 (0%) Strand=Plus/Plus Query 19115 CATGGAAGCCAACAGTTACCGCACCACGCTGCACGAGCTGATCCGTCAGTTGGTCATTGC 19174 |||||||||||||||||||||||||||| ||||||||||||| ||||||||||| || || Sbjct 1 CATGGAAGCCAACAGTTACCGCACCACGTTGCACGAGCTGATTCGTCAGTTGGTGATCGC 60 Query 19175 GGGTGCTGGGTGTCTGTACCTTCCGCCACCTGAGAGTTCGTCTCAAGGGTCGCCCATGAA 19234 || |||| |||||||||||||| |||||| ||||| | |||||| || ||||| Sbjct 61 TGGGTCTGGCCTGCTGTACCTTCCGCCTCCTGAGGGTTCGACCCAAGGGAGCCCTATGAA 120 Query 19235 GCTCTACACGCTGCACAACCACGTCGTCCAACGGGATGCGTTCGGTAACGTCCTGCAAAT 19294 |||||||||||||||||||||||| ||||||||||| | ||||| |||||||| || || Sbjct 121 GCTCTACACGCTGCACAACCACGTAGTCCAACGGGACTCCTTCGGGAACGTCCTACAGAT 180 Query 19295 CTGCACGCTCGACAGAGTGGCCTTCGCGGCCCTTCCTGAAGACGTTCGGACCAAGCTTGA 19354 | |||||||||| |||||||| |||||||||||||||||||| ||| |||| ||||| Sbjct 181 CGTTACGCTCGACAAGGTGGCCTTTGCGGCCCTTCCTGAAGACGTGCGGTCCAAACTTGA 240 Query 19355 CGGCGAACACAAACCGGACGAAGAGATCGAAGTGTACACC 19394 ||| || || || || || |||||||||||||| | |||| Sbjct 241 CGGAGAGCATAAGCCCGATGAAGAGATCGAAGTCTTCACC 280 >seq524349 Length=315 Score = 248 bits (274), Expect = 2e-61 Identities = 247/316 (78%), Gaps = 3/316 (1%) Strand=Plus/Plus Query 12531 GACCAAATCTGGAACGCCCCGAAGTACGTCCCCGATGGTGTGGTCTCCGCGTTGTCCCTA 12590 |||||| | |||||||||| |||||||||||| |||||||||||||| ||| || ||| Sbjct 1 GACCAAGTGTGGAACGCCCAGAAGTACGTCCCTGATGGTGTGGTCTCGGCGAAGTACCTT 60 Query 12591 AAGGAGCGCATCAAGGCCAAGAAGGTCGTGGCGTCAATGCCATTGGTCGGCCCTGAAGAG 12650 |||| |||||||| | |||||||| | | || ||||| ||||| || ||| | ||| Sbjct 61 AAGGGCCGCATCAAAGAAAAGAAGGTTATCACTTCGATGCCTTTGGTGGGACCTCACGAG 120 Query 12651 CT-TCGTGAAATGACCAAAGAGATCCGTGGTGGAGAGGTCATTCTGGTCACGTCGGGTAG 12709 || || | |||||||| | ||||| | || || |||||||||||||| ||||| Sbjct 121 CTGTCCCG-CATGACCAAGAACATCCGCGAAGGCGAAGTCATTCTGGTCACCTCGGGCTC 179 Query 12710 CGGCTCCGGCAAGTCTACCTACGTCCGTCAGAACACCTACAATCTGTTCCACTACAGCAA 12769 |||||| |||||||| || | |||||| |||||||||||||| | ||||| | | Sbjct 180 CGGCTCGGGCAAGTCCACGTTCGTCCGACAGAACACCTACAACGTCTTCCATGAGGCGAC 239 Query 12770 GATCGCTGTGGGCGTAGCGATGCTCGAAGAGTCCGTAGAGGAAA-CCGTACAGGACATCG 12828 |||| | |||||||| |||||||| || || ||||| ||||||| ||||||||||||||| Sbjct 240 GATCCCGGTGGGCGTTGCGATGCTTGAGGAATCCGTTGAGGAAACCCGTACAGGACATCG 299 Query 12829 TTGGTTTGCATATGGG 12844 | ||| | ||||| || Sbjct 300 TAGGTCTCCATATCGG 315 >seq500082 Length=313 Score = 201 bits (222), Expect = 3e-47 Identities = 219/289 (76%), Gaps = 4/289 (1%) Strand=Plus/Minus Query 4492 AATGGCTGATGATCCACGGGGCCAACACAGCGGGCGTCGATAAGGTTCCTTTTGATGAAC 4551 ||||||| ||||| |||||||||||||| || || ||||||||||| ||||| ||| ||| Sbjct 299 AATGGCTCATGATTCACGGGGCCAACACTGCTGGGGTCGATAAGGTCCCTTTCGATCAAC 240 Query 4552 GGAAACAATGGGTTCGCGACAATGAA--GACTGCATCCTGCGTTGCGCAAGAGACCCACT 4609 | || ||||||||||| ||||||||| |||| ||||| || ||||| |||||| || Sbjct 239 GCAAGCAATGGGTTCGTGACAATGAATCGACT--ATCCTCCGATGCGCTGAAGACCCGCT 182 Query 4610 TCAGAACACAGAATGGATGTCAATGGATTCTCCCTTTTGCTTCCTTGCCTTCTGTTTTGA 4669 |||| || |||||| ||||| || ||||| || ||| | || ||||| || || Sbjct 181 CACTCACACCGAGTGGATGGGGATGGACTCGCCCTTCTGTTTCTTGGCGTTCTGCTTCGA 122 Query 4670 ATGGGCTGGAGTCAAGCGCGACGGTGAGAACCACGTATCCGCTCTGCCCATCGCTTTTGA 4729 ||||| || ||| ||||| || | ||| ||||||||| || ||||||||||| Sbjct 121 GTGGGCCGGTGTCGTTCGCGATGGAGCTGCACACCGATCCGCTCTACCAATCGCTTTTGA 62 Query 4730 TGGGTCTTGCTCAGGCATTCAGCACTTTTCTGCAATGCTACGAGACGAA 4778 || || || || || ||||| |||||||| ||||| || |||||| Sbjct 61 CGGAAGCTGTTCGGGTATCCAGCATTTTTCTGCCATGCTCCGGGACGAA 13 >seq489868 Length=343 Score = 140 bits (154), Expect = 8e-29 Identities = 107/124 (86%), Gaps = 2/124 (2%) Strand=Plus/Plus Query 860 GTCGTGAACGTGATTCACAGTGACATCGGGCTGGAT-GCGTCCAGTAACCTCAACGCTTT 918 ||||||||||| || ||||||||||||| |||||| || ||||| | | | | ||| | Sbjct 1 GTCGTGAACGTAATCAACAGTGACATCGGTCTGGATCGCTTCCAGCACCGTGCAAGCTCT 60 Query 919 GACCGAGTAGCGTTAATCGGTGGCCTTCT-CTTGAGGGTCACCCGTTAAATCCACTCACT 977 | |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 61 GGTCGAGTAGCGTTAATCGGTGGCCTTCTTCTTGAGGGTCACCCGTTAAATCCACTCACT 120 Query 978 GCTA 981 | || Sbjct 121 GGTA 124 Score = 140 bits (154), Expect = 8e-29 Identities = 107/124 (86%), Gaps = 2/124 (2%) Strand=Plus/Plus Query 40848 GTCGTGAACGTGATTCACAGTGACATCGGGCTGGAT-GCGTCCAGTAACCTCAACGCTTT 40906 ||||||||||| || ||||||||||||| |||||| || ||||| | | | | ||| | Sbjct 1 GTCGTGAACGTAATCAACAGTGACATCGGTCTGGATCGCTTCCAGCACCGTGCAAGCTCT 60 Query 40907 GACCGAGTAGCGTTAATCGGTGGCCTTCT-CTTGAGGGTCACCCGTTAAATCCACTCACT 40965 | |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 61 GGTCGAGTAGCGTTAATCGGTGGCCTTCTTCTTGAGGGTCACCCGTTAAATCCACTCACT 120 Query 40966 GCTA 40969 | || Sbjct 121 GGTA 124 >seq498418 Length=347 Score = 136 bits (150), Expect = 1e-27 Identities = 129/164 (79%), Gaps = 8/164 (5%) Strand=Plus/Plus Query 38965 CGCTCTTTAACAACTTGGATGCAACATGGTCTGCAAGGCTCCGAAAG----GACACCTAC 39020 ||||||||||||| ||||| | ||||| | |||| ||| || || | ||| Sbjct 29 CGCTCTTTAACAATTTGGA----ATTTGGTCGGTCAGGCACCGTAACAGGTGAAAGATAC 84 Query 39021 AGGCATCGCTACGAAGGCAAGCACTGAGCCTTCTCATAGCGCCTTTGAGAACCTGAACGG 39080 |||||||||||||||||||||||||||||||| | ||| |||||||| || |||||| Sbjct 85 CGGCATCGCTACGAAGGCAAGCACTGAGCCTTCCTACAGCACCTTTGAGGGCCCGAACGG 144 Query 39081 ATGTTACGGGTAGGGTTAGCAAGGGCCTTATGGGAACCACTTAG 39124 |||| ||||||| ||| |||||||| ||| ||||||| ||||| Sbjct 145 ATGTCACGGGTACGGTCAGCAAGGGTCTTGTGGGAACACCTTAG 188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130174565873940