Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_015269.1
Length=118351
Score E
Sequences producing significant alignments: (Bits) Value
seq426744 205 7e-48
seq507483 152 4e-32
seq506238 116 3e-21
seq450559 114 1e-20
seq435060 114 1e-20
seq351952 100 2e-16
seq484804 98.7 7e-16
seq155978 96.9 3e-15
seq508595 86.0 5e-12
>seq426744
Length=341
Score = 205 bits (226), Expect = 7e-48
Identities = 239/314 (76%), Gaps = 8/314 (3%)
Strand=Plus/Plus
Query 99850 ATTAAGCGGTAGCGTAAGCACCAGATACAACACCATTACTA--AAGTA-ACGTTGCAGGT 99906
|||| || | ||||| | ||||| || | ||| |||| || | |||||| ||||
Sbjct 29 ATTACGCTGCTGCGTATGTACCAGTAACGATACCTTTACCTGCAATCATACGTTGTAGGT 88
Query 99907 TAACACGCTGAGTAACGTAGTAAGCATCACGCTGTTTACCAGCTTGGCGCTCACGTTCAA 99966
||| ||| ||||| |||||||| |||||||| || ||||||||||| ||||||||||| |
Sbjct 89 TAAGACGTTGAGTTACGTAGTATGCATCACGTTGCTTACCAGCTTGACGCTCACGTTCTA 148
Query 99967 CAGTAACAGCGCGCTGACGCGGCATTACGAAGTTATCTTTATAAACAATAACTGCGAACT 100026
| |||| || || ||||| || | |||||||| || ||||| ||| ||| |
Sbjct 149 CTGTAATAGTACGTTGACGAGGAACAACGAAGTTCTCACGGTAAACGATAGTACAGAATT 208
Query 100027 CTTTATCTG-CTGCTTTAGCTGGGAAGTACTCAGAAACTACAACGGGCAGACCATAAATA 100085
| | | ||| | ||||||||||||||||| | |||||||| ||| | ||||| || |||
Sbjct 209 C-TGAACTGACAGCTTTAGCTGGGAAGTAGTTAGAAACTAGAACTGCTAGACCGTAGATA 267
Query 100086 CGCCCAACCTGACCTTGCAG-TTTAAC-AG-AATCATTACCAACCTGGGCAACATCCTGC 100142
|| ||||| || ||||| || |||||| || ||| |||||| ||| ||||||||||
Sbjct 268 CGACCAACTTGTCCTTGAAGTTTTAACGAGTTATCCGCACCAACTTGGTTAACATCCTGC 327
Query 100143 CATTCTTCATCTTC 100156
||||||||||||||
Sbjct 328 CATTCTTCATCTTC 341
>seq507483
Length=1083
Score = 152 bits (168), Expect = 4e-32
Identities = 561/861 (65%), Gaps = 37/861 (4%)
Strand=Plus/Plus
Query 70243 TAAATTGACAGATACTGGAGCGGACTCTACAGATGCAGAAGCTCTGAACGAACTGTCTAC 70302
|||||| |||| |||||| || |||||| |||||||||| || | ||||
Sbjct 227 TAAATTTACAGGTACTGGTGCAATCTCTACTGATGCAGAAGTACTAGAAAAACTA----- 281
Query 70303 GCAGCATCCAATT-GCTAA--AACT--CTGCTAGAGATTCGTAAGCTGACTAAGCTGATC 70357
| || | || || |||| || | || || |||||||| ||| || || | |
Sbjct 282 GGAGAAACCCATGAGCTACCCAAGTTACTACTGGAGATTCGCAAGGCAACAAAAGTACTT 341
Query 70358 TCTACTTACGTTGAGAAGATTCTTCTGAGCATTGATGCTGATGGTTGCATT--CGTACTG 70415
|||||| || ||||| | | |||||| |||||| |||| ||||| |
Sbjct 342 AATACTTATGTAATTAAGATGTTAGACAACATTGACCGAGATGGT--CATTTACGTACAG 399
Query 70416 GCTTCCACGAACACATGACTACTTCTGGTCGCCTGAGTTCTTCTGGTAAACTGAACCTGC 70475
| || | |||||| ||| ||||| ||||| || ||||| || || ||||| ||| | |
Sbjct 400 GGTTTAGCCAACACACGACCACTTCGGGTCGTCTAAGTTCATCAGGCAAACTTAACTTAC 459
Query 70476 AACAGTTACCTCGTGATGAATCTATTATCAAGGGTTGTGTAGTAGCTCCTCCGGGGTATC 70535
| || | ||||||||||| |||| | ||||| ||| | ||||||||| |||| |||
Sbjct 460 AGCAACTTCCTCGTGATGATGCTATGGTTAAGGGATGTATTGTAGCTCCTGCGGGCTATA 519
Query 70536 GTGTAATCGCATGGGACTTAACAACTGCGGAAGTTTATTATGCTGCTGTTCTATCTGGTG 70595
| ||| | || ||| | |||||||||| | | || || | || ||| |
Sbjct 520 GAGTAGTAGCCGTGGATATGGAAACTGCGGAAATGTGGGTAGCAGCAGCACTTAGTGGGG 579
Query 70596 ATAGAA-ATATGCA-ACAGGTATTTATCAACATGAGAAATGAACCTGATAAATACCCTGA 70653
||| || | | || | || |||| | | ||| | | || | || | ||
Sbjct 580 ATAAAAGACCTACAGAAAGTGTTTTAACGATATGGCTGACAAGTCTATTGTATCTGCCGA 639
Query 70654 CTTCCA---CTCTAACATCGCACACATGGTATTTAAGCTCCAATGCGAACCTCGTGATGT 70710
|||||| |||| || ||||||||||| || |||| | || | | | ||| |
Sbjct 640 CTTCCACAGCTCT---ATTGCACACATGGTGTTCAAGCCAAACTGTCTAGCGCATGA-AT 695
Query 70711 TAAAAAGT-TATTCCCAGCCCTGCGTCAAGCAGCTAAAGCAATCACCTTTGGTATTTTGT 70769
||||| | | ||||| || | ||||| || ||||||| || | || |||||| | |
Sbjct 696 TAAAAGCTATGTTCCCTGCATTACGTCAGGCTTCTAAAGCTATTTCATTCGGTATTCTAT 755
Query 70770 ATGGTTCTGGCCCGGCTAAAGTAGCTCATTCTGTTAATGAAGCTCTTCTGGAACAGGCTG 70829
||| ||| || ||||| ||||| | ||| ||||||| | || | || || ||
Sbjct 756 TCGGTAGTGGACCAGCTAAGGTAGCAGAATCTATTAATGAGTCGCTATTTGAGCAACATG 815
Query 70830 CTAAGACAGGCGAACCGTTTGTAGAGTGTACTGTTGCAGA---CGCTAAAGAGTACATTG 70886
||||| || || | || || || | ||| |||||||| |||||||
Sbjct 816 TAAAGACGGGTTGCCC---TTACGAACCTATTGATAAAGAAACAGCTAAAGATTACATTG 872
Query 70887 AAACTTACTTCGGCCAGTTCCCGCAGCTTAAGCGTTGGATTGATAAGTGTCACGACCAGA 70946
| |||||| | | ||||| | || || ||||||||||| || || || ||||
Sbjct 873 ATGTTTACTTTAGTCGTTTCCCTGACCTGAAACGTTGGATTGACGCGTCCCATGAGCAGA 932
Query 70947 TCAAGAATCATGGGTTTATCTATAGTCACTTTGGTCGTAAGCGTCGTCTGCACAATATCC 71006
| | ||||||||||| ||||| ||||| || ||||| ||| | || | |||||||
Sbjct 933 TTCTACAGCATGGGTTTATTTATAGCCACTTCGGACGTAAACGTAGACTACGTAATATCC 992
Query 71007 ACTC--CGAAGACCGTG-GTGTTCAGGGTGAAGAAATT-CGTTCTGGATTTAACGCAATC 71062
||| || | | | |||| |||||||| || ||||| || || ||||| |||
Sbjct 993 GCTCAGCGTCTAGAGAGACTGTT---GGTGAAGAGCTTACGTTCAGGCTTCAACGCTATC 1049
Query 71063 ATTCAGTCTGCTTCTTCTGAT 71083
||||| || || ||||||
Sbjct 1050 ATTCAAGGGGCATCATCTGAT 1070
>seq506238
Length=275
Score = 116 bits (128), Expect = 3e-21
Identities = 130/172 (76%), Gaps = 4/172 (2%)
Strand=Plus/Plus
Query 27389 GTAAATGTACGACTAATAACGTCGTTCTGTTGTTCACGAGTCAGTGCGTTAAATCGAACA 27448
||||||||||| | | ||||| | ||||||||| | || | || |||||| || ||
Sbjct 52 GTAAATGTACGTGTTAATACGTCTTGCTGTTGTTCTGGTGTTAATGAGTTAAAACGCACT 111
Query 27449 GCATAGCCAGAGACACGGATAGTCAATTGAGGATATTTTTCAGGATGTTTCTGTGCATC- 27507
|| || || || ||||| ||||| ||||| |||||||||||||| ||||| |||||
Sbjct 112 GCGTAACCTGATACACGAATAGTTAATTGTGGATATTTTTCAGGGTGTTTAACAGCATCT 171
Query 27508 -CAAAAGCTGATCACGGCTTAACACATTGACATTTAGGTGCTGACCACCTTC 27558
| || | | ||||| | ||||||||| || |||| || |||||||||||
Sbjct 172 TCCAATGTT--TCACGACGTAACACATTCACGTTTAAATGTTGACCACCTTC 221
>seq450559
Length=633
Score = 114 bits (126), Expect = 1e-20
Identities = 233/342 (68%), Gaps = 8/342 (2%)
Strand=Plus/Plus
Query 53232 ACTGAGAAAGAA-GTCTATGACGCTTGTCAGGGTTTAGAATATGAAATCAATACCATGTT 53290
|| || ||||| ||| ||||||| | ||| | ||||||||| | |||||| ||
Sbjct 296 ACCGAAAAAGAGTGTC-ATGACGCATTCCAGTCACTTGAATATGAAGTGAATACCTTGCA 354
Query 53291 CAACTCTAATGGACAGAGTCCATTTATTACCTTTGGTTTTGGTCTAGGAACTTCTTGGGA 53350
| | ||||||| || | || ||| ||||||||||||||||| |||| || |||||
Sbjct 355 TACCGCTAATGGCCAAACACCGTTTGTTACCTTTGGTTTTGGTTTAGGCGTGTCGTGGGA 414
Query 53351 AGCACGTCTAGTACAGAAAGCAATACTGAAAGTACGCATGGATGGTTTAGGTATCAAT-- 53408
| ||| || | ||| || | || | | |||||| |||| |||||||||| |||
Sbjct 415 GTCGCGTTTAATTCAGCAATCGATGTTAACAGTACGTATGGCGGGTTTAGGTAAAAATCG 474
Query 53409 -AAACGTACAGCTATCTTCCCGAAACTGGTATTTGTACTTCGTGATGGCGTAAATATGAA 53467
||| ||||| |||| || ||| |||| |||| || |||||||| ||| ||
Sbjct 475 CAAA---ACAGCAGTCTTTCCAAAATTGGTGTTTGCCATTAAAGATGGCGTGAATCATAA 531
Query 53468 ACCAGGAGATGTTAATTATGACATCAAGAAGTTAGCTATGAAATGTACTGCTGAACGTAT 53527
| | |||| ||||||||| || || ||| | || | | || | | || ||
Sbjct 532 AGCGACTGATGCTAATTATGATATTAAAAAGATGGCCTTAACGTGCTCAACCATGCGCAT 591
Query 53528 GTATCCAGATTATATCAGCTATGATAAGGTTGTGGAAGTTAC 53569
||| |||||| | | | |||||| |||| ||| |||| ||
Sbjct 592 GTACCCAGATATTCTTAATTATGATCAGGTAGTGAAAGTCAC 633
>seq435060
Length=507
Score = 114 bits (126), Expect = 1e-20
Identities = 318/487 (65%), Gaps = 17/487 (3%)
Strand=Plus/Plus
Query 70622 AACATGAGAAATGAACCTGATAAATACCCTGACTTCCACTCTAACATCGCACACATGGTA 70681
|| |||| | | || ||| || || || ||||||||| |||||| || ||||||||
Sbjct 23 AAGATGAAAGAAGATCCTACCAAGTATCCCGACTTCCACAGTAACATAGCTCACATGGTG 82
Query 70682 TTTAAGCTCCAATGCGAACCTCGTGATGTTAAAAAGTTATTCCCAGCCCTGCGTCAAGCA 70741
||||| || | || | ||| || ||||| || ||||||||||||| | || ||
Sbjct 83 TTTAACCTACCTTGTAAGCCTGAGGAAGTTAAGAAACTATTCCCAGCCCTAAGGCAGGCT 142
Query 70742 GCTAAAGCAATCACCTTTGGTATTTTGTATGGTTCTGGCCCGGCTAAAGTAGCTCATTCT 70801
|| || || || || ||||||||| | | ||||| || | || ||||| |
Sbjct 143 GCGAAGGCGATAACATTTGGTATTCTATTCGGTTCAGGAGCAGCATCTGTAGCAGAGCAA 202
Query 70802 GTTAATGAAGCTCTTCTGGAACAGGCTGCTAAGACAGGCGAACCGTTTGTAGAGTGTACT 70861
||||| |||| || ||| ||| ||| | | || ||||||
Sbjct 203 GTTAACTTAGCTAAGCTAGAA------------TTAGGTGAAGC---AGCTGATTGTACT 247
Query 70862 GTTGCAGACGCTAAAGAGTACATTGAAACTTACTTCGGCCAGTTCCCGCAGCTT-AAGCG 70920
| | ||| || ||||| ||| |||||| | |||||| ||| |||||
Sbjct 248 AAAGAAATCGCCGCAGGTTACATCGAAGTGTACTTCAAGCGGTTCCCTAGACTTAAAGCG 307
Query 70921 TTGGATTGATAAGTGTCACGACCAGATCAAGAATCATGGGTTTATCTATAGTCACTTTGG 70980
||||||||| ||||| || | ||| | | || ||||| || | ||||| ||
Sbjct 308 -TGGATTGATTCTTGTCATGATGAAATCCGTCAGAAAGGATTTATATACAACCACTTCGG 366
Query 70981 TCGTAAGCGTCGTCTGCACAATATCCACTCCGAAGACCGTGGTGTTCAGGGTGAAGAAAT 71040
||||||||| | | ||||| ||| || || | || ||| |||| ||||||
Sbjct 367 CCGTAAGCGTAGATTACACAACATCTCTTCTAGCGATAGAGGCGTTGTAGGTGGAGAAAT 426
Query 71041 TCGTTCTGGATTTAACGCAATCATTCAGTCTGCTTCTTCTGATAGTCTCCTTTTAGGTGC 71100
||||| |||||||| || ||||| |||||||| || |||||| | || |||| ||
Sbjct 427 CCGTTCAGGATTTAATGCTATCATACAGTCTGCGTCATCTGATCACTTACTGCTAGGAGC 486
Query 71101 TGTAGAT 71107
|||||||
Sbjct 487 TGTAGAT 493
>seq351952
Length=416
Score = 100 bits (110), Expect = 2e-16
Identities = 126/173 (73%), Gaps = 0/173 (0%)
Strand=Plus/Plus
Query 27389 GTAAATGTACGACTAATAACGTCGTTCTGTTGTTCACGAGTCAGTGCGTTAAATCGAACA 27448
||||| ||||| | || || || | || |||||| ||| | | ||||||||| ||
Sbjct 34 GTAAAGGTACGTGTGATTACATCTTGCTTTTGTTCTGCAGTTAACGAGTTAAATCGTACT 93
Query 27449 GCATAGCCAGAGACACGGATAGTCAATTGAGGATATTTTTCAGGATGTTTCTGTGCATCC 27508
|| || || || ||||| || || ||||| ||||| || || |||| || | |||||||
Sbjct 94 GCGTAACCCGATACACGAATTGTTAATTGTGGATACTTATCTGGATTTTCCATTGCATCC 153
Query 27509 AAAAGCTGATCACGGCTTAACACATTGACATTTAGGTGCTGACCACCTTCGAT 27561
|| | | |||||| | | ||||| || |||| ||| ||||||||||| ||
Sbjct 154 AATAACATTTCACGGTTCATTACATTAACGTTTAAGTGTTGACCACCTTCAAT 206
>seq484804
Length=980
Score = 98.7 bits (108), Expect = 7e-16
Identities = 197/287 (69%), Gaps = 9/287 (3%)
Strand=Plus/Plus
Query 46216 CGATCATCAATGCCCTTT---TTCAGATTATGATAAATCTTGGCTAGTTGGTCAAACATA 46272
||||||||||| || ||| |||| |||| | ||| || || ||||||| ||
Sbjct 16 CGATCATCAATACCTTTTGGATTCAAGTTATCAACAATTTTTTTCAGCTGGTCAATGCTA 75
Query 46273 AGACCATCGGAATTAGTCCACTGACGTCCTTGAACACCATAGACTCGTCCCATATCATCC 46332
|||||| | |||| ||| ||| ||||||| || || || || |||||||||||
Sbjct 76 CCACCATCAGGCTTAGCCCATGCACGGCCTTGAATCCCGTAAACGCGCCCCATATCATCT 135
Query 46333 TCACCTTTACGGT--ATGGATTGTCTAGCCAAGCTGAGTTTTCATTTGCATTAGCATTCC 46390
|||||||| |||| ||| || | |||||||| ||| ||| |||||||||| ||
Sbjct 136 TCACCTTTGCGGTGAATG--TTATTAAGCCAAGCATCATTTAAATTGGCATTAGCATCCC 193
Query 46391 ATGTGTTAACACCAATAGCGCGGAATTGTGCTGCTGAGTCATACCCACGTAGATACCCAA 46450
| || ||| ||| | || || | || || |||||| ||||| | ||| ||||
Sbjct 194 AGGTTTTAGTACCTAGTTTACGAAAATCAGCGGCATTGTCATAACCACGGATATAACCAA 253
Query 46451 TCATTTCCATTATTGCTTGTTTTGCAAACGC-CTTACGAGTAGTAAT 46496
| | || || || || ||| ||| || |||||| ||||| ||
Sbjct 254 TAAACTCAGCAATCGC-TGACTTGAAAAAGCTCTTACGCGTAGTTAT 299
>seq155978
Length=1540
Score = 96.9 bits (106), Expect = 3e-15
Identities = 190/281 (68%), Gaps = 0/281 (0%)
Strand=Plus/Minus
Query 46144 TGAGTGTGCATACATGGACGTAAGCAACCCTTTGAGAACTCTCCCGGATTCCAGAAGGTT 46203
|| |||||||| || || ||||| || || || || || || || | || |
Sbjct 1448 TGCGTGTGCATGCACGGGCGTAAACAGCCAAGCTCAAATTCGCCTGGGTTGTAAAAACTA 1389
Query 46204 AGAATTTCCCCACGATCATCAATGCCCTTTTTCAGATTATGATAAATCTTGGCTAGTTGG 46263
| ||||| || ||||| || || || ||||| | |||| | | || |||||||||
Sbjct 1388 ATTATTTCACCGCGATCGTCTATACCATTTTTTAAGTTATTAATTACTTTTGCTAGTTGG 1329
Query 46264 TCAAACATAAGACCATCGGAATTAGTCCACTGACGTCCTTGAACACCATAGACTCGTCCC 46323
|| | | | ||||| | ||| ||| ||||| || ||||| || || |||
Sbjct 1328 TCTAGCGTTGAGCCATCTGGGCGCTGCCAAGCACGCCCTTGTACGCCATAAACACGGCCC 1269
Query 46324 ATATCATCCTCACCTTTACGGTATGGATTGTCTAGCCAAGCTGAGTTTTCATTTGCATTA 46383
|| || |||||||||||||||| ||||| | |||||||| ||||| ||||| ||
Sbjct 1268 ATGTCGTCCTCACCTTTACGGTGCGGATTATTAAGCCAAGCGCTATTTTCGTTTGCGTTT 1209
Query 46384 GCATTCCATGTGTTAACACCAATAGCGCGGAATTGTGCTGC 46424
|||| ||| || ||| || || |||| || ||||| ||
Sbjct 1208 GCATCCCAGGTTTTACAGCCTATTTCGCGAAACTGTGCCGC 1168
>seq508595
Length=419
Score = 86.0 bits (94), Expect = 5e-12
Identities = 67/79 (85%), Gaps = 1/79 (1%)
Strand=Plus/Minus
Query 29101 TGGTGCGGGATACGAGAGTCGAACTCGTGTCTACTGGTTGGAAGCCAGTTATTCTAGCCA 29160
|||||||| || |||| |||||||| |||||||| |||||||||||||||||| |||
Sbjct 354 TGGTGCGGAATTAGAGATTCGAACTCTAATCTACTGGGTGGAAGCCAGTTATTCTA-CCA 296
Query 29161 CTGAACTAATCACGCGTAA 29179
|||||||||| ||| |||
Sbjct 295 TTGAACTAATCCCGCATAA 277
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 376173645487664
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