Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_015269.1 Length=118351 Score E Sequences producing significant alignments: (Bits) Value seq426744 205 7e-48 seq507483 152 4e-32 seq506238 116 3e-21 seq450559 114 1e-20 seq435060 114 1e-20 seq351952 100 2e-16 seq484804 98.7 7e-16 seq155978 96.9 3e-15 seq508595 86.0 5e-12 >seq426744 Length=341 Score = 205 bits (226), Expect = 7e-48 Identities = 239/314 (76%), Gaps = 8/314 (3%) Strand=Plus/Plus Query 99850 ATTAAGCGGTAGCGTAAGCACCAGATACAACACCATTACTA--AAGTA-ACGTTGCAGGT 99906 |||| || | ||||| | ||||| || | ||| |||| || | |||||| |||| Sbjct 29 ATTACGCTGCTGCGTATGTACCAGTAACGATACCTTTACCTGCAATCATACGTTGTAGGT 88 Query 99907 TAACACGCTGAGTAACGTAGTAAGCATCACGCTGTTTACCAGCTTGGCGCTCACGTTCAA 99966 ||| ||| ||||| |||||||| |||||||| || ||||||||||| ||||||||||| | Sbjct 89 TAAGACGTTGAGTTACGTAGTATGCATCACGTTGCTTACCAGCTTGACGCTCACGTTCTA 148 Query 99967 CAGTAACAGCGCGCTGACGCGGCATTACGAAGTTATCTTTATAAACAATAACTGCGAACT 100026 | |||| || || ||||| || | |||||||| || ||||| ||| ||| | Sbjct 149 CTGTAATAGTACGTTGACGAGGAACAACGAAGTTCTCACGGTAAACGATAGTACAGAATT 208 Query 100027 CTTTATCTG-CTGCTTTAGCTGGGAAGTACTCAGAAACTACAACGGGCAGACCATAAATA 100085 | | | ||| | ||||||||||||||||| | |||||||| ||| | ||||| || ||| Sbjct 209 C-TGAACTGACAGCTTTAGCTGGGAAGTAGTTAGAAACTAGAACTGCTAGACCGTAGATA 267 Query 100086 CGCCCAACCTGACCTTGCAG-TTTAAC-AG-AATCATTACCAACCTGGGCAACATCCTGC 100142 || ||||| || ||||| || |||||| || ||| |||||| ||| |||||||||| Sbjct 268 CGACCAACTTGTCCTTGAAGTTTTAACGAGTTATCCGCACCAACTTGGTTAACATCCTGC 327 Query 100143 CATTCTTCATCTTC 100156 |||||||||||||| Sbjct 328 CATTCTTCATCTTC 341 >seq507483 Length=1083 Score = 152 bits (168), Expect = 4e-32 Identities = 561/861 (65%), Gaps = 37/861 (4%) Strand=Plus/Plus Query 70243 TAAATTGACAGATACTGGAGCGGACTCTACAGATGCAGAAGCTCTGAACGAACTGTCTAC 70302 |||||| |||| |||||| || |||||| |||||||||| || | |||| Sbjct 227 TAAATTTACAGGTACTGGTGCAATCTCTACTGATGCAGAAGTACTAGAAAAACTA----- 281 Query 70303 GCAGCATCCAATT-GCTAA--AACT--CTGCTAGAGATTCGTAAGCTGACTAAGCTGATC 70357 | || | || || |||| || | || || |||||||| ||| || || | | Sbjct 282 GGAGAAACCCATGAGCTACCCAAGTTACTACTGGAGATTCGCAAGGCAACAAAAGTACTT 341 Query 70358 TCTACTTACGTTGAGAAGATTCTTCTGAGCATTGATGCTGATGGTTGCATT--CGTACTG 70415 |||||| || ||||| | | |||||| |||||| |||| ||||| | Sbjct 342 AATACTTATGTAATTAAGATGTTAGACAACATTGACCGAGATGGT--CATTTACGTACAG 399 Query 70416 GCTTCCACGAACACATGACTACTTCTGGTCGCCTGAGTTCTTCTGGTAAACTGAACCTGC 70475 | || | |||||| ||| ||||| ||||| || ||||| || || ||||| ||| | | Sbjct 400 GGTTTAGCCAACACACGACCACTTCGGGTCGTCTAAGTTCATCAGGCAAACTTAACTTAC 459 Query 70476 AACAGTTACCTCGTGATGAATCTATTATCAAGGGTTGTGTAGTAGCTCCTCCGGGGTATC 70535 | || | ||||||||||| |||| | ||||| ||| | ||||||||| |||| ||| Sbjct 460 AGCAACTTCCTCGTGATGATGCTATGGTTAAGGGATGTATTGTAGCTCCTGCGGGCTATA 519 Query 70536 GTGTAATCGCATGGGACTTAACAACTGCGGAAGTTTATTATGCTGCTGTTCTATCTGGTG 70595 | ||| | || ||| | |||||||||| | | || || | || ||| | Sbjct 520 GAGTAGTAGCCGTGGATATGGAAACTGCGGAAATGTGGGTAGCAGCAGCACTTAGTGGGG 579 Query 70596 ATAGAA-ATATGCA-ACAGGTATTTATCAACATGAGAAATGAACCTGATAAATACCCTGA 70653 ||| || | | || | || |||| | | ||| | | || | || | || Sbjct 580 ATAAAAGACCTACAGAAAGTGTTTTAACGATATGGCTGACAAGTCTATTGTATCTGCCGA 639 Query 70654 CTTCCA---CTCTAACATCGCACACATGGTATTTAAGCTCCAATGCGAACCTCGTGATGT 70710 |||||| |||| || ||||||||||| || |||| | || | | | ||| | Sbjct 640 CTTCCACAGCTCT---ATTGCACACATGGTGTTCAAGCCAAACTGTCTAGCGCATGA-AT 695 Query 70711 TAAAAAGT-TATTCCCAGCCCTGCGTCAAGCAGCTAAAGCAATCACCTTTGGTATTTTGT 70769 ||||| | | ||||| || | ||||| || ||||||| || | || |||||| | | Sbjct 696 TAAAAGCTATGTTCCCTGCATTACGTCAGGCTTCTAAAGCTATTTCATTCGGTATTCTAT 755 Query 70770 ATGGTTCTGGCCCGGCTAAAGTAGCTCATTCTGTTAATGAAGCTCTTCTGGAACAGGCTG 70829 ||| ||| || ||||| ||||| | ||| ||||||| | || | || || || Sbjct 756 TCGGTAGTGGACCAGCTAAGGTAGCAGAATCTATTAATGAGTCGCTATTTGAGCAACATG 815 Query 70830 CTAAGACAGGCGAACCGTTTGTAGAGTGTACTGTTGCAGA---CGCTAAAGAGTACATTG 70886 ||||| || || | || || || | ||| |||||||| ||||||| Sbjct 816 TAAAGACGGGTTGCCC---TTACGAACCTATTGATAAAGAAACAGCTAAAGATTACATTG 872 Query 70887 AAACTTACTTCGGCCAGTTCCCGCAGCTTAAGCGTTGGATTGATAAGTGTCACGACCAGA 70946 | |||||| | | ||||| | || || ||||||||||| || || || |||| Sbjct 873 ATGTTTACTTTAGTCGTTTCCCTGACCTGAAACGTTGGATTGACGCGTCCCATGAGCAGA 932 Query 70947 TCAAGAATCATGGGTTTATCTATAGTCACTTTGGTCGTAAGCGTCGTCTGCACAATATCC 71006 | | ||||||||||| ||||| ||||| || ||||| ||| | || | ||||||| Sbjct 933 TTCTACAGCATGGGTTTATTTATAGCCACTTCGGACGTAAACGTAGACTACGTAATATCC 992 Query 71007 ACTC--CGAAGACCGTG-GTGTTCAGGGTGAAGAAATT-CGTTCTGGATTTAACGCAATC 71062 ||| || | | | |||| |||||||| || ||||| || || ||||| ||| Sbjct 993 GCTCAGCGTCTAGAGAGACTGTT---GGTGAAGAGCTTACGTTCAGGCTTCAACGCTATC 1049 Query 71063 ATTCAGTCTGCTTCTTCTGAT 71083 ||||| || || |||||| Sbjct 1050 ATTCAAGGGGCATCATCTGAT 1070 >seq506238 Length=275 Score = 116 bits (128), Expect = 3e-21 Identities = 130/172 (76%), Gaps = 4/172 (2%) Strand=Plus/Plus Query 27389 GTAAATGTACGACTAATAACGTCGTTCTGTTGTTCACGAGTCAGTGCGTTAAATCGAACA 27448 ||||||||||| | | ||||| | ||||||||| | || | || |||||| || || Sbjct 52 GTAAATGTACGTGTTAATACGTCTTGCTGTTGTTCTGGTGTTAATGAGTTAAAACGCACT 111 Query 27449 GCATAGCCAGAGACACGGATAGTCAATTGAGGATATTTTTCAGGATGTTTCTGTGCATC- 27507 || || || || ||||| ||||| ||||| |||||||||||||| ||||| ||||| Sbjct 112 GCGTAACCTGATACACGAATAGTTAATTGTGGATATTTTTCAGGGTGTTTAACAGCATCT 171 Query 27508 -CAAAAGCTGATCACGGCTTAACACATTGACATTTAGGTGCTGACCACCTTC 27558 | || | | ||||| | ||||||||| || |||| || ||||||||||| Sbjct 172 TCCAATGTT--TCACGACGTAACACATTCACGTTTAAATGTTGACCACCTTC 221 >seq450559 Length=633 Score = 114 bits (126), Expect = 1e-20 Identities = 233/342 (68%), Gaps = 8/342 (2%) Strand=Plus/Plus Query 53232 ACTGAGAAAGAA-GTCTATGACGCTTGTCAGGGTTTAGAATATGAAATCAATACCATGTT 53290 || || ||||| ||| ||||||| | ||| | ||||||||| | |||||| || Sbjct 296 ACCGAAAAAGAGTGTC-ATGACGCATTCCAGTCACTTGAATATGAAGTGAATACCTTGCA 354 Query 53291 CAACTCTAATGGACAGAGTCCATTTATTACCTTTGGTTTTGGTCTAGGAACTTCTTGGGA 53350 | | ||||||| || | || ||| ||||||||||||||||| |||| || ||||| Sbjct 355 TACCGCTAATGGCCAAACACCGTTTGTTACCTTTGGTTTTGGTTTAGGCGTGTCGTGGGA 414 Query 53351 AGCACGTCTAGTACAGAAAGCAATACTGAAAGTACGCATGGATGGTTTAGGTATCAAT-- 53408 | ||| || | ||| || | || | | |||||| |||| |||||||||| ||| Sbjct 415 GTCGCGTTTAATTCAGCAATCGATGTTAACAGTACGTATGGCGGGTTTAGGTAAAAATCG 474 Query 53409 -AAACGTACAGCTATCTTCCCGAAACTGGTATTTGTACTTCGTGATGGCGTAAATATGAA 53467 ||| ||||| |||| || ||| |||| |||| || |||||||| ||| || Sbjct 475 CAAA---ACAGCAGTCTTTCCAAAATTGGTGTTTGCCATTAAAGATGGCGTGAATCATAA 531 Query 53468 ACCAGGAGATGTTAATTATGACATCAAGAAGTTAGCTATGAAATGTACTGCTGAACGTAT 53527 | | |||| ||||||||| || || ||| | || | | || | | || || Sbjct 532 AGCGACTGATGCTAATTATGATATTAAAAAGATGGCCTTAACGTGCTCAACCATGCGCAT 591 Query 53528 GTATCCAGATTATATCAGCTATGATAAGGTTGTGGAAGTTAC 53569 ||| |||||| | | | |||||| |||| ||| |||| || Sbjct 592 GTACCCAGATATTCTTAATTATGATCAGGTAGTGAAAGTCAC 633 >seq435060 Length=507 Score = 114 bits (126), Expect = 1e-20 Identities = 318/487 (65%), Gaps = 17/487 (3%) Strand=Plus/Plus Query 70622 AACATGAGAAATGAACCTGATAAATACCCTGACTTCCACTCTAACATCGCACACATGGTA 70681 || |||| | | || ||| || || || ||||||||| |||||| || |||||||| Sbjct 23 AAGATGAAAGAAGATCCTACCAAGTATCCCGACTTCCACAGTAACATAGCTCACATGGTG 82 Query 70682 TTTAAGCTCCAATGCGAACCTCGTGATGTTAAAAAGTTATTCCCAGCCCTGCGTCAAGCA 70741 ||||| || | || | ||| || ||||| || ||||||||||||| | || || Sbjct 83 TTTAACCTACCTTGTAAGCCTGAGGAAGTTAAGAAACTATTCCCAGCCCTAAGGCAGGCT 142 Query 70742 GCTAAAGCAATCACCTTTGGTATTTTGTATGGTTCTGGCCCGGCTAAAGTAGCTCATTCT 70801 || || || || || ||||||||| | | ||||| || | || ||||| | Sbjct 143 GCGAAGGCGATAACATTTGGTATTCTATTCGGTTCAGGAGCAGCATCTGTAGCAGAGCAA 202 Query 70802 GTTAATGAAGCTCTTCTGGAACAGGCTGCTAAGACAGGCGAACCGTTTGTAGAGTGTACT 70861 ||||| |||| || ||| ||| ||| | | || |||||| Sbjct 203 GTTAACTTAGCTAAGCTAGAA------------TTAGGTGAAGC---AGCTGATTGTACT 247 Query 70862 GTTGCAGACGCTAAAGAGTACATTGAAACTTACTTCGGCCAGTTCCCGCAGCTT-AAGCG 70920 | | ||| || ||||| ||| |||||| | |||||| ||| ||||| Sbjct 248 AAAGAAATCGCCGCAGGTTACATCGAAGTGTACTTCAAGCGGTTCCCTAGACTTAAAGCG 307 Query 70921 TTGGATTGATAAGTGTCACGACCAGATCAAGAATCATGGGTTTATCTATAGTCACTTTGG 70980 ||||||||| ||||| || | ||| | | || ||||| || | ||||| || Sbjct 308 -TGGATTGATTCTTGTCATGATGAAATCCGTCAGAAAGGATTTATATACAACCACTTCGG 366 Query 70981 TCGTAAGCGTCGTCTGCACAATATCCACTCCGAAGACCGTGGTGTTCAGGGTGAAGAAAT 71040 ||||||||| | | ||||| ||| || || | || ||| |||| |||||| Sbjct 367 CCGTAAGCGTAGATTACACAACATCTCTTCTAGCGATAGAGGCGTTGTAGGTGGAGAAAT 426 Query 71041 TCGTTCTGGATTTAACGCAATCATTCAGTCTGCTTCTTCTGATAGTCTCCTTTTAGGTGC 71100 ||||| |||||||| || ||||| |||||||| || |||||| | || |||| || Sbjct 427 CCGTTCAGGATTTAATGCTATCATACAGTCTGCGTCATCTGATCACTTACTGCTAGGAGC 486 Query 71101 TGTAGAT 71107 ||||||| Sbjct 487 TGTAGAT 493 >seq351952 Length=416 Score = 100 bits (110), Expect = 2e-16 Identities = 126/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 27389 GTAAATGTACGACTAATAACGTCGTTCTGTTGTTCACGAGTCAGTGCGTTAAATCGAACA 27448 ||||| ||||| | || || || | || |||||| ||| | | ||||||||| || Sbjct 34 GTAAAGGTACGTGTGATTACATCTTGCTTTTGTTCTGCAGTTAACGAGTTAAATCGTACT 93 Query 27449 GCATAGCCAGAGACACGGATAGTCAATTGAGGATATTTTTCAGGATGTTTCTGTGCATCC 27508 || || || || ||||| || || ||||| ||||| || || |||| || | ||||||| Sbjct 94 GCGTAACCCGATACACGAATTGTTAATTGTGGATACTTATCTGGATTTTCCATTGCATCC 153 Query 27509 AAAAGCTGATCACGGCTTAACACATTGACATTTAGGTGCTGACCACCTTCGAT 27561 || | | |||||| | | ||||| || |||| ||| ||||||||||| || Sbjct 154 AATAACATTTCACGGTTCATTACATTAACGTTTAAGTGTTGACCACCTTCAAT 206 >seq484804 Length=980 Score = 98.7 bits (108), Expect = 7e-16 Identities = 197/287 (69%), Gaps = 9/287 (3%) Strand=Plus/Plus Query 46216 CGATCATCAATGCCCTTT---TTCAGATTATGATAAATCTTGGCTAGTTGGTCAAACATA 46272 ||||||||||| || ||| |||| |||| | ||| || || ||||||| || Sbjct 16 CGATCATCAATACCTTTTGGATTCAAGTTATCAACAATTTTTTTCAGCTGGTCAATGCTA 75 Query 46273 AGACCATCGGAATTAGTCCACTGACGTCCTTGAACACCATAGACTCGTCCCATATCATCC 46332 |||||| | |||| ||| ||| ||||||| || || || || ||||||||||| Sbjct 76 CCACCATCAGGCTTAGCCCATGCACGGCCTTGAATCCCGTAAACGCGCCCCATATCATCT 135 Query 46333 TCACCTTTACGGT--ATGGATTGTCTAGCCAAGCTGAGTTTTCATTTGCATTAGCATTCC 46390 |||||||| |||| ||| || | |||||||| ||| ||| |||||||||| || Sbjct 136 TCACCTTTGCGGTGAATG--TTATTAAGCCAAGCATCATTTAAATTGGCATTAGCATCCC 193 Query 46391 ATGTGTTAACACCAATAGCGCGGAATTGTGCTGCTGAGTCATACCCACGTAGATACCCAA 46450 | || ||| ||| | || || | || || |||||| ||||| | ||| |||| Sbjct 194 AGGTTTTAGTACCTAGTTTACGAAAATCAGCGGCATTGTCATAACCACGGATATAACCAA 253 Query 46451 TCATTTCCATTATTGCTTGTTTTGCAAACGC-CTTACGAGTAGTAAT 46496 | | || || || || ||| ||| || |||||| ||||| || Sbjct 254 TAAACTCAGCAATCGC-TGACTTGAAAAAGCTCTTACGCGTAGTTAT 299 >seq155978 Length=1540 Score = 96.9 bits (106), Expect = 3e-15 Identities = 190/281 (68%), Gaps = 0/281 (0%) Strand=Plus/Minus Query 46144 TGAGTGTGCATACATGGACGTAAGCAACCCTTTGAGAACTCTCCCGGATTCCAGAAGGTT 46203 || |||||||| || || ||||| || || || || || || || | || | Sbjct 1448 TGCGTGTGCATGCACGGGCGTAAACAGCCAAGCTCAAATTCGCCTGGGTTGTAAAAACTA 1389 Query 46204 AGAATTTCCCCACGATCATCAATGCCCTTTTTCAGATTATGATAAATCTTGGCTAGTTGG 46263 | ||||| || ||||| || || || ||||| | |||| | | || ||||||||| Sbjct 1388 ATTATTTCACCGCGATCGTCTATACCATTTTTTAAGTTATTAATTACTTTTGCTAGTTGG 1329 Query 46264 TCAAACATAAGACCATCGGAATTAGTCCACTGACGTCCTTGAACACCATAGACTCGTCCC 46323 || | | | ||||| | ||| ||| ||||| || ||||| || || ||| Sbjct 1328 TCTAGCGTTGAGCCATCTGGGCGCTGCCAAGCACGCCCTTGTACGCCATAAACACGGCCC 1269 Query 46324 ATATCATCCTCACCTTTACGGTATGGATTGTCTAGCCAAGCTGAGTTTTCATTTGCATTA 46383 || || |||||||||||||||| ||||| | |||||||| ||||| ||||| || Sbjct 1268 ATGTCGTCCTCACCTTTACGGTGCGGATTATTAAGCCAAGCGCTATTTTCGTTTGCGTTT 1209 Query 46384 GCATTCCATGTGTTAACACCAATAGCGCGGAATTGTGCTGC 46424 |||| ||| || ||| || || |||| || ||||| || Sbjct 1208 GCATCCCAGGTTTTACAGCCTATTTCGCGAAACTGTGCCGC 1168 >seq508595 Length=419 Score = 86.0 bits (94), Expect = 5e-12 Identities = 67/79 (85%), Gaps = 1/79 (1%) Strand=Plus/Minus Query 29101 TGGTGCGGGATACGAGAGTCGAACTCGTGTCTACTGGTTGGAAGCCAGTTATTCTAGCCA 29160 |||||||| || |||| |||||||| |||||||| |||||||||||||||||| ||| Sbjct 354 TGGTGCGGAATTAGAGATTCGAACTCTAATCTACTGGGTGGAAGCCAGTTATTCTA-CCA 296 Query 29161 CTGAACTAATCACGCGTAA 29179 |||||||||| ||| ||| Sbjct 295 TTGAACTAATCCCGCATAA 277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 376173645487664