Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq509954 176 5e-39 seq508167 150 2e-31 seq515292 129 7e-25 seq293205 102 9e-17 seq522593 98.7 1e-15 seq409479 95.1 1e-14 seq472080 91.5 2e-13 seq95357 82.4 9e-11 >seq509954 Length=433 Score = 176 bits (194), Expect = 5e-39 Identities = 229/315 (73%), Gaps = 4/315 (1%) Strand=Plus/Plus Query 111949 TTGCTCAAGACTTGAAAGCTATCCACGGATTAGATGCAGAGTCTGAGTTGGCAAACATTC 112008 ||||||| || |||||||| | || || || || ||||| || | ||||| |||| Sbjct 1 TTGCTCAGGATATGAAAGCTGTACATGGCTTGGACGCAGAAGAAGAACTTGCAAATATTC 60 Query 112009 TCTCAACAGAGATCCTTGCTGAAATCAACAGAGAAGTTGTTAGAACTGTATACAGAGGTG 112068 | ||||| || || ||||| ||||| ||| | || | || | || ||||| | || Sbjct 61 TTTCAACTGAAATTCTTGCAGAAATTAACCGTGAGCTAATTCGTACCGTATATGCAACTG 120 Query 112069 CAAAACCTGGTGCACAGGCTAACGTT--GCTAACGCGGGTGTATTCGATCTTGACGTTGA 112126 |||||||||||||||| || ||| || ||||| ||| | |||||| | ||||| || Sbjct 121 CAAAACCTGGTGCACAAACT--GGTTCAGCAAACGCTGGTATCTTCGATTTAGACGTAGA 178 Query 112127 CTCAAATGGTAGATGGTCAGTTGAAAAATTCAAAGGACTATTATTCCAGATTGAGAGAGA 112186 |||||||| | |||||||| ||||||||||||||||| | ||||| ||||| | || Sbjct 179 TGCAAATGGTCGCTGGTCAGTAGAAAAATTCAAAGGACTTATGTTCCAAATTGAACGTGA 238 Query 112187 CGCAAACGCAATCGCACAGGAAACTCGTAGAGGGAAGGGTAACATCATCATCACATCTGC 112246 || ||| |||||| | ||||| | | || || |||||| | || ||| || | Sbjct 239 TGCTAACCAAATCGCTAAAGAAACCAGACGTGGTAAAGGTAACTTTATTATCTGTTCATC 298 Query 112247 TGATGTAGCTTCTGC 112261 ||| ||||||||||| Sbjct 299 TGACGTAGCTTCTGC 313 >seq508167 Length=647 Score = 150 bits (166), Expect = 2e-31 Identities = 175/236 (74%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 154869 TGTATTATGATTACATACCCATCTACACATGGTGTATTTGAAACTAACATTAGACAGATA 154928 ||||| ||||| || ||||||||||| |||||||| | ||||| | ||| | | || Sbjct 359 TGTATCATGATCACTTACCCATCTACGCATGGTGTTTATGAAAAAACGATTGCAGAAATT 418 Query 154929 TGTAAGATCGTTCATGACAATGGTGGTCAGGTATATCTTGATGGAGCAAATCTAAATGCA 154988 ||||| || ||||||||||||||||||| || || |||||||| || || | ||||| Sbjct 419 TGTAATATTATTCATGACAATGGTGGTCAAGTTTACCTTGATGGCGCGAACATGAATGCT 478 Query 154989 CAGGTAGGACTAGCAAAACCATGTGAGTATGGTGCAGATGTATGTCATCTAAACTTACAT 155048 || || ||| || || |||| | ||| || ||||| | |||||| |||||||| Sbjct 479 CAAGTTGGAGTAACATCACCAGGCTTTATTGGCGCTGATGTTTCTCATCTTAACTTACAC 538 Query 155049 AAAACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATAGGTGT 155104 ||||| ||| ||||||||| || || || || || || | || ||||| || || Sbjct 539 AAAACCTTCGCTATTCCACACGGCGGCGGTGGACCAGGTATGGGACCTATTGGCGT 594 >seq515292 Length=303 Score = 129 bits (142), Expect = 7e-25 Identities = 175/244 (72%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 154862 ACTGTCATGTATTATGATTACATACCCATCTACACATGGTGTATTTGAAACTAACATTAG 154921 ||| || ||| | ||| | ||||| ||||| ||||||||||| ||||||| | ||||| Sbjct 289 ACTTTCTTGTTTGATGGTCACATATCCATCAACACATGGTGTTTTTGAAAGTGCGATTAG 230 Query 154922 ACAGATATGTAAGATCGTTCATGACAATGGTGGTCAGGTATATCTTGATGGAGCAAATCT 154981 | | || | ||| ||||||||||||||||| || ||| | || ||||| || | Sbjct 229 AGAAATTACACAAATCATTCATGACAATGGTGGTTTAGTTTATATGGACGGAGCCAACAT 170 Query 154982 AAATGCACAGGTAGGACTAGCAAAACCATGTGAGTATGGTGCAGATGTATGTCATCTAAA 155041 ||||| || || ||| || |||| ||| | ||| |||||||| || ||| | || Sbjct 169 GAATGCGCAAGTTGGATTAACAAATCCAGCTACAATTGGAGCAGATGTTTGCCATTTGAA 110 Query 155042 CTTACATAAAACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATAGG 155101 || || || |||||| ||||| || |||||||| || || || || || || || | Sbjct 109 TTTGCACAAGACATTCGCAATTCCTCACGGAGGTGGTGGACCAGGTGTTGGACCAATTTG 50 Query 155102 TGTA 155105 |||| Sbjct 49 TGTA 46 >seq293205 Length=2462 Score = 102 bits (112), Expect = 9e-17 Identities = 320/490 (65%), Gaps = 17/490 (3%) Strand=Plus/Plus Query 154623 TCATTACAACCTAACGCAGGATCACAGGGTGAGTATGCAGGACTGTTAGCAATCCAAGCA 154682 ||||| ||||||||| |||| | || ||||| || |||| || || || | | Sbjct 1209 TCATTGCAACCTAACTCAGGTGCTCAAGGTGAATACGCAGCTTAATTGCCATTCGTAA-A 1267 Query 154683 TACCATCAAGGATCA---GGAGATGATAAAAGAAATGTATGTTTGATACCAGAGTCAGCA 154739 ||||| | || ||| || || | | | | || |||||||| || ||| || || Sbjct 1268 TACCA-CGAG--TCACGCGGCGACGCTCACCGTAACGTATGTTTAATTCCAAGCTCGGCG 1324 Query 154740 CATGGAACTAATCCTGCTAGTGCTGTCATGGCAGGGATGAAAGTTGTAGGTGTCAAGTGT 154799 ||||| ||||| || || || ||||| | |||||| |||| | || | ||| Sbjct 1325 CATGGTACTAACCCAGCGTCGGCACAAATGGCCAGCATGAAAATTGTGGTGGTTGATTGT 1384 Query 154800 GATGATGATGGTAACATAGACATCAAAGATCTAGAGAAGAAAGCAATCATGAA----TAC 154855 ||| | | |||||| ||||||| ||||| | ||||||| ||| || Sbjct 1385 GATAAAAACGGTAACGTAGACATGGCCGATCTTAAAGCGAAAGCA-----GAAGCGGTAG 1439 Query 154856 ATTTGAACTG-TCATGTATTATGATTACATACCCATCTACACATGGTGTATTTGAAACTA 154914 |||| || ||||||||||| || |||||||||||||| || |||| ||| | Sbjct 1440 CCGAAAACTTATCGTGTATTATGATCACTTACCCATCTACACACGGCGTATACGAAGAAA 1499 Query 154915 ACATTAGACAGATATGTAAGATCGTTCATGACAATGGTGGTCAGGTATATCTTGATGGAG 154974 ||| | | || || | || ||||| | | || || || || || | || || | Sbjct 1500 CAATTCGTGAAATTTGCGATATTATTCATCAGCACGGCGGCCAAGTTTACATGGACGGCG 1559 Query 154975 CAAATCTAAATGCACAGGTAGGACTAGCAAAACCATGTGAGTATGGTGCAGATGTATGTC 155034 |||| | || || || || || || | | ||| | ||| |||| |||| | Sbjct 1560 CAAACATGAACGCGCAAGTTGGCGTAACTAGCCCAGGCTTTATTGGCTCAGACGTATCGC 1619 Query 155035 ATCTAAACTTACATAAAACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTC 155094 | ||||||| |||||||| || ||||||||||| || || || || || || || || | Sbjct 1620 ACTTAAACTTGCATAAAACCTTTTGTATTCCACACGGTGGCGGTGGCCCAGGTGTTGGCC 1679 Query 155095 CTATAGGTGT 155104 | || ||||| Sbjct 1680 CAATTGGTGT 1689 >seq522593 Length=217 Score = 98.7 bits (108), Expect = 1e-15 Identities = 133/181 (73%), Gaps = 7/181 (4%) Strand=Plus/Plus Query 154859 TGAACTGTCATGTATTATGATTACATACCCATCTACACATGGTGTATTTGAAA---CTAA 154915 |||| | || ||| | ||| | || ||||||||||| |||||||| ||||||| ||| Sbjct 38 TGAATTATCTTGTTTAATGGTAACTTACCCATCTACTCATGGTGTTTTTGAAAGTGCTA- 96 Query 154916 CATTAGACAGATATGTAAGATCGTTCATGACAATGGTGGTCAGGTATATCTTGATGGAGC 154975 |||||| | || | | ||| | ||||||||||||||| || || | || || || Sbjct 97 -ATTAGAGAAATTACTCAAATCATACATGACAATGGTGGTTTAGTTTACATGGACGGTGC 155 Query 154976 AAATCTAAATGCACAGGTAGGACTAGCAAAACCATGTGAGTA-TGGTGCAGATGTATGTC 155034 || | |||||||| |||||| | |||| ||| | || || ||| |||||||| |||| Sbjct 156 TAACATGAATGCACAAGTAGGATTGACAAATCCA-GCGACTATTGGCGCAGATGTTTGTC 214 Query 155035 A 155035 | Sbjct 215 A 215 >seq409479 Length=405 Score = 95.1 bits (104), Expect = 1e-14 Identities = 163/234 (70%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 154872 ATTATGATTACATACCCATCTACACATGGTGTATTTGAAACTAACATTAGACAGATATGT 154931 || ||||| || ||||| |||||||| || || | ||| |||| | | ||||| Sbjct 3 ATCATGATCACCTACCCTTCTACACACGGCGTGTACGAAGAAGCCATTCAAGAAGTATGT 62 Query 154932 AAGATCGTTCATGACAATGGTGGTCAGGTATATCTTGATGGAGCAAATCTAAATGCACAG 154991 | || ||||| |||||| || || || || ||||| ||||| | |||||||| Sbjct 63 GAATGGGTACATGAAGCTGGTGGCCAAGTTTACCTAGATGGCGCAAACATGAATGCACAA 122 Query 154992 GTAGGACTAGCAAAACCATGTGAGTAT-GGTGCAGATGTATGTCATCTAAACTTACATAA 155050 ||||| || ||| ||| | ||| || | ||||| | || || ||||| ||||| Sbjct 123 GTAGGTTTAACAACACCGGGCTT-TATCGGCTCTGATGTTTCACACCTTAACTTGCATAA 181 Query 155051 AACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATAGGTGT 155104 |||||||||||||||||| || || || || || || | || || || || || Sbjct 182 AACATTCTGTATTCCACACGGCGGCGGCGGCCCAGGTATGGGACCAATCGGCGT 235 >seq472080 Length=626 Score = 91.5 bits (100), Expect = 2e-13 Identities = 211/307 (69%), Gaps = 11/307 (4%) Strand=Plus/Minus Query 136516 GCTATACCAAGTATACTATCAGAAGCATTAGCAGTTACGTTTGACAATCATATTGGTCAT 136575 ||||| || |||| || |||||||||| | || ||||| ||| |||| || ||| Sbjct 566 GCTATCCCTTCTATATTAGAAGAAGCATTAAATATCACTTTTGATAATGATATCGGACAT 507 Query 136576 GATTACCTT-GAGGATTACGAAGAAAGATACGACTTCTATCATACAAAAGAAGATAAAAT 136634 ||||| || || |||| |||||| | | ||| | ||||||| || || | || ||| Sbjct 506 GATTATTTTCGAAGATTCTGAAGAACGCTTCGAATATTATCATAGAACGGATGTTAGAAT 447 Query 136635 TCCTTT-TGATCTAGAATTCTTTAATAAGATTACAAAAGGTGGTCTTCCTAACAAAACCC 136693 || || | || || ||| | ||||| |||| || |||||| ||| ||| | Sbjct 446 ACCATTCTTAT-TACAATCTATGAATAATGTTACTAATGGTGGTGCAATTAA-AAAGTCA 389 Query 136694 TTAAT-GTTGCTCTTGCAGGAACTGGTGTAGGTAAGTCTTTATTCATGTGT-CATTGT-- 136749 ||| | || | |||| |||||||| ||||| || ||||||||| ||| || Sbjct 388 TTAGTAGTACCAGTTGCCCCTACTGGTGTTGGTAAATCATTATTCATGACAGCATGGTCA 329 Query 136750 GCTAGTTCTGTTTTATTACAAGGTAAAAATGTTTTATACATCACACTTGAAATGGCAGAG 136809 || | |||| || | || ||| | ||||||||||| | ||| | |||||||| || Sbjct 328 GC-ATTTCTATTAAA--ACTTGGTTATAATGTTTTATATGTTACATTGGAAATGGCGGAA 272 Query 136810 Gaaaaaa 136816 ||||||| Sbjct 271 GAAAAAA 265 >seq95357 Length=3550 Score = 82.4 bits (90), Expect = 9e-11 Identities = 71/88 (81%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 153885 GGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGGAGAGACAAA 153944 ||||| ||| ||| | | || || ||||| ||||||||||| ||| | ||||||||| Sbjct 2339 GGTAAGGAAGTGTACCGGCTTGCTCTGCAGACCAGAGAGCAGCACATCCGCAGAGACAAA 2398 Query 153945 GCAACCAGTAACATCTGCACAGCTCAGG 153972 |||||||| ||||||||||| || |||| Sbjct 2399 GCAACCAGCAACATCTGCACTGCACAGG 2426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 575408081439680