Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_015281.1 Length=179563 Score E Sequences producing significant alignments: (Bits) Value seq509954 143 3e-29 >seq509954 Length=433 Score = 143 bits (158), Expect = 3e-29 Identities = 244/351 (70%), Gaps = 2/351 (1%) Strand=Plus/Plus Query 117844 TTGCTCAGGACCTCAAGGCAGTTCATGGTCTTGATGCAGAATCCGAACTGAGCAACATCC 117903 |||||||||| | || || || ||||| | || |||||| ||||| || || | Sbjct 1 TTGCTCAGGATATGAAAGCTGTACATGGCTTGGACGCAGAAGAAGAACTTGCAAATATTC 60 Query 117904 TCAGCACCGAGATTCTTGCTGAAATCAACCGTGAAGTCGTTCGTACCGTCATGGTGAAC- 117962 | || || |||||||| ||||| |||||||| | |||||||||| || ||| Sbjct 61 TTTCAACTGAAATTCTTGCAGAAATTAACCGTGAGCTAATTCGTACCGT-ATATGCAACT 119 Query 117963 GCACGTCCTGGTGCTCAGAACAACACCGCTACTGCTGGTATTTTTGACCTTGACGTTGAC 118022 ||| |||||||| || | | || | |||||||| || || | ||||| || Sbjct 120 GCAAAACCTGGTGCACAAACTGGTTCAGCAAACGCTGGTATCTTCGATTTAGACGTAGAT 179 Query 118023 AGCAACGGTCGCTGGTCTGTTGAGAAGTTCAAAGGACTTCTGTTCCAGATTGAGCGCGAT 118082 || ||||||||||| || || || |||||||||||| ||||||| ||||| || ||| Sbjct 180 GCAAATGGTCGCTGGTCAGTAGAAAAATTCAAAGGACTTATGTTCCAAATTGAACGTGAT 239 Query 118083 GCTAACGCGATTGGTCATGAGACTCGTCGTGGAAAGGGCAACATCATGATCTGTTCTGCA 118142 |||||| || | | | || || | ||||| || || ||| | || |||||||| | Sbjct 240 GCTAACCAAATCGCTAAAGAAACCAGACGTGGTAAAGGTAACTTTATTATCTGTTCATCT 299 Query 118143 GACGTGGCATCCGCCCTGGCAATGGCAGGCGTTCTCGATTACGCTCCTGCT 118193 ||||| || || || |||| || || | || |||| ||| |||||| Sbjct 300 GACGTAGCTTCTGCATTGGCTGCTGCTGGAATCCTTGATTTCGCACCTGCT 350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570700012178160