Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq509954 149 7e-31 seq508167 149 7e-31 seq515292 120 4e-22 seq293205 114 2e-20 seq408527 104 3e-17 seq449735 91.5 2e-13 seq409479 91.5 2e-13 seq95357 84.2 3e-11 >seq509954 Length=433 Score = 149 bits (164), Expect = 7e-31 Identities = 223/315 (71%), Gaps = 4/315 (1%) Strand=Plus/Plus Query 116146 TTGCTCAAGACTTGAAAGCGATCCACGGATTAGATGCCGAGTCTGAGTTAGCAAACATTC 116205 ||||||| || ||||||| | || || || || || || || | ||||| |||| Sbjct 1 TTGCTCAGGATATGAAAGCTGTACATGGCTTGGACGCAGAAGAAGAACTTGCAAATATTC 60 Query 116206 TCTCAACAGAGATACTTGCTGAAATCAACAGAGAAGTTGTTAGAACCGTTTATAGAGGTG 116265 | ||||| || || ||||| ||||| ||| | || | || | ||||| ||| | || Sbjct 61 TTTCAACTGAAATTCTTGCAGAAATTAACCGTGAGCTAATTCGTACCGTATATGCAACTG 120 Query 116266 CCAAGCCTGGTGCTCAAGCAAACGTT--GCTAACGCAGGTGTGTTCGACTTAGACGTTGA 116323 | || |||||||| ||| | ||| || ||||| ||| | ||||| |||||||| || Sbjct 121 CAAAACCTGGTGCACAAACTG--GTTCAGCAAACGCTGGTATCTTCGATTTAGACGTAGA 178 Query 116324 CTCAAACGGAAGATGGTCAGTTGAGAAATTCAAAGGACTAATGTTCCAGATTGAGAGAGA 116383 |||| || | |||||||| || |||||||||||||| |||||||| ||||| | || Sbjct 179 TGCAAATGGTCGCTGGTCAGTAGAAAAATTCAAAGGACTTATGTTCCAAATTGAACGTGA 238 Query 116384 CGCAAACGCAATCGCACAGGAAACTCGTAGAGGGAAGGGTAATGTAATCATCACATCTGC 116443 || ||| |||||| | ||||| | | || || ||||| | || ||| || | Sbjct 239 TGCTAACCAAATCGCTAAAGAAACCAGACGTGGTAAAGGTAACTTTATTATCTGTTCATC 298 Query 116444 TGATGTTGCTTCTGC 116458 ||| || |||||||| Sbjct 299 TGACGTAGCTTCTGC 313 >seq508167 Length=647 Score = 149 bits (164), Expect = 7e-31 Identities = 268/388 (69%), Gaps = 4/388 (1%) Strand=Plus/Plus Query 159394 TGTTTGATACCAGAGTCAGCACATGGAACTAATCCTGCATCAGCAGTGATGGCAGGGATG 159453 ||||| || |||| || || || || || || || ||||||||| |||||| | ||| Sbjct 209 TGTTTAATTCCAGCCTCTGCTCACGGCACAAACCCAGCATCAGCAATGATGGTTGATATG 268 Query 159454 AAAGTTGTAGGTGTCAAGTGTGATGATGATGGCAACATAGACATCAAAGATCTAGAGAAG 159513 |||||||| | ||| |||||| | | || || | || || || || | Sbjct 269 AAAGTTGTTGTTGTTGCTTGTGATAAACAAGGTAATGTTGATATGGCCGACTTAACAGCG 328 Query 159514 AAAGCAATCATGAAT-ACATTTGAACTGT-CATGTATTATGATTACATATCCATCTACAC 159571 ||||| | | || | || ||| | | ||||| ||||| || || |||||||| | Sbjct 329 AAAGC--TGAAGAGTTACGCGATAACCTTGCGTGTATCATGATCACTTACCCATCTACGC 386 Query 159572 ATGGTGTATTTGAAACAAACATCAGACAGATATGTAAGATTGTTCATGAGAATGGTGGTC 159631 ||||||| | ||||| || || | | || ||||| ||| ||||||| |||||||||| Sbjct 387 ATGGTGTTTATGAAAAAACGATTGCAGAAATTTGTAATATTATTCATGACAATGGTGGTC 446 Query 159632 AGGTATATCTTGATGGTGCAAATCTAAATGCACAGGTAGGTCTAGCAAAACCATGTGACT 159691 | || || |||||||| || || | ||||| || || || || || |||| | Sbjct 447 AAGTTTACCTTGATGGCGCGAACATGAATGCTCAAGTTGGAGTAACATCACCAGGCTTTA 506 Query 159692 ATGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCACATGGAGGTG 159751 ||| || ||||| | |||||| |||||||| || || ||| ||||||||| || || | Sbjct 507 TTGGCGCTGATGTTTCTCATCTTAACTTACACAAAACCTTCGCTATTCCACACGGCGGCG 566 Query 159752 GAGGTCCTGGCGTAGGTCCTATTGGTGT 159779 | || || || | || |||||||| || Sbjct 567 GTGGACCAGGTATGGGACCTATTGGCGT 594 >seq515292 Length=303 Score = 120 bits (132), Expect = 4e-22 Identities = 175/245 (71%), Gaps = 2/245 (1%) Strand=Plus/Minus Query 159537 ACTGTCATGTATTATGATTACATATCCATCTACACATGGTGTATTTGAAACAAACATCAG 159596 ||| || ||| | ||| | ||||||||||| ||||||||||| ||||||| || || Sbjct 289 ACTTTCTTGTTTGATGGTCACATATCCATCAACACATGGTGTTTTTGAAAGTGCGATTAG 230 Query 159597 ACAGATATGTAAGATTGTTCATGAGAATGGTGGTCAGGTATATCTTGATGGTGCAAATCT 159656 | | || | || ||||||| ||||||||| || ||| | || || || || | Sbjct 229 AGAAATTACACAAATCATTCATGACAATGGTGGTTTAGTTTATATGGACGGAGCCAACAT 170 Query 159657 AAATGCACAGGTAGGTCTAGCAAAACCATGTGACTA-TGGTGCAGATGTATGTCATCTAA 159715 ||||| || || || || |||| ||| | || | ||| |||||||| || ||| | | Sbjct 169 GAATGCGCAAGTTGGATTAACAAATCCA-GCTACAATTGGAGCAGATGTTTGCCATTTGA 111 Query 159716 ACTTACATAAGACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTG 159775 | || || ||||||||| ||||| || |||||||| || || || || || || ||| Sbjct 110 ATTTGCACAAGACATTCGCAATTCCTCACGGAGGTGGTGGACCAGGTGTTGGACCAATTT 51 Query 159776 GTGTA 159780 ||||| Sbjct 50 GTGTA 46 >seq293205 Length=2462 Score = 114 bits (126), Expect = 2e-20 Identities = 323/490 (66%), Gaps = 17/490 (3%) Strand=Plus/Plus Query 159298 TCATTACAACCTAACGCAGGATCACAGGGTGAGTATGCAGGACTGTTAGCAATCCAAGCA 159357 ||||| ||||||||| |||| | || ||||| || |||| || || || | | Sbjct 1209 TCATTGCAACCTAACTCAGGTGCTCAAGGTGAATACGCAGCTTAATTGCCATTCGTAA-A 1267 Query 159358 TACCATCAAGGATCA---GGAGATGATAAAAGAAATGTATGTTTGATACCAGAGTCAGCA 159414 ||||| | || ||| || || | | | | || |||||||| || ||| || || Sbjct 1268 TACCA-CGAG--TCACGCGGCGACGCTCACCGTAACGTATGTTTAATTCCAAGCTCGGCG 1324 Query 159415 CATGGAACTAATCCTGCATCAGCAGTGATGGCAGGGATGAAAGTTGTAGGTGTCAAGTGT 159474 ||||| ||||| || || || ||| ||||| | |||||| |||| | || | ||| Sbjct 1325 CATGGTACTAACCCAGCGTCGGCACAAATGGCCAGCATGAAAATTGTGGTGGTTGATTGT 1384 Query 159475 GATGATGATGGCAACATAGACATCAAAGATCTAGAGAAGAAAGCAATCATGAA----TAC 159530 ||| | | || ||| ||||||| ||||| | ||||||| ||| || Sbjct 1385 GATAAAAACGGTAACGTAGACATGGCCGATCTTAAAGCGAAAGCA-----GAAGCGGTAG 1439 Query 159531 ATTTGAACTG-TCATGTATTATGATTACATATCCATCTACACATGGTGTATTTGAAACAA 159589 |||| || ||||||||||| || || ||||||||||| || |||| ||| || Sbjct 1440 CCGAAAACTTATCGTGTATTATGATCACTTACCCATCTACACACGGCGTATACGAAGAAA 1499 Query 159590 ACATCAGACAGATATGTAAGATTGTTCATGAGAATGGTGGTCAGGTATATCTTGATGGTG 159649 || | | || || | ||| ||||| || | || || || || || | || || | Sbjct 1500 CAATTCGTGAAATTTGCGATATTATTCATCAGCACGGCGGCCAAGTTTACATGGACGGCG 1559 Query 159650 CAAATCTAAATGCACAGGTAGGTCTAGCAAAACCATGTGACTATGGTGCAGATGTATGTC 159709 |||| | || || || || || || | | ||| | ||| |||| |||| | Sbjct 1560 CAAACATGAACGCGCAAGTTGGCGTAACTAGCCCAGGCTTTATTGGCTCAGACGTATCGC 1619 Query 159710 ATCTAAACTTACATAAGACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTC 159769 | ||||||| ||||| || || ||||||||||| || || || || || || || || | Sbjct 1620 ACTTAAACTTGCATAAAACCTTTTGTATTCCACACGGTGGCGGTGGCCCAGGTGTTGGCC 1679 Query 159770 CTATTGGTGT 159779 | |||||||| Sbjct 1680 CAATTGGTGT 1689 >seq408527 Length=595 Score = 104 bits (114), Expect = 3e-17 Identities = 197/285 (69%), Gaps = 4/285 (1%) Strand=Plus/Minus Query 159389 ATGTATGTTTGATACCAGAGTCAGCACATGGAACTAATCCTGCATCAGCAGTGATGGCAG 159448 |||| ||||| || || ||||||| || || || || ||||| | || ||||| | Sbjct 325 ATGTTTGTTTAATCCCTCAGTCAGCGCACGGTACCAACCCTGCGACTGCTATGATGATGG 266 Query 159449 GGATGAAAGTTGTAGGTGTCAAGTGTGATGATGATGGCAACATAGACATCAAAGATCTAG 159508 | |||||||| | | || || |||||| |||| ||| | || ||| | |||||| Sbjct 265 GCATGAAAGTAATCGTGGTTAAAACTGATGACAATGGTAACGTTGATATCGATGATCTA- 207 Query 159509 AGAAGAAAGCAATCATGAATACATTTGAACTGTCA-TGTATT-ATGATTACATATCCATC 159566 | ||| | | ||| ||| | | | | || ||| |||||||| |||||||| Sbjct 206 ACTGCTAAGTG-TGAAGAAAACAGTGCCAATCTAGGTGCATTGATGATTACTTATCCATC 148 Query 159567 TACACATGGTGTATTTGAAACAAACATCAGACAGATATGTAAGATTGTTCATGAGAATGG 159626 || ||||| || |||||| | |||| | | || ||| | || ||||| | |||| Sbjct 147 AACGCATGGCGTGTTTGAAGAAGGCATCCGTAAAATCTGTGACCTTATTCATAAACATGG 88 Query 159627 TGGTCAGGTATATCTTGATGGTGCAAATCTAAATGCACAGGTAGG 159671 |||||||| ||| | |||||||| ||| | ||||||||||| || Sbjct 87 CGGTCAGGTTTATATGGATGGTGCCAATATGAATGCACAGGTTGG 43 >seq449735 Length=3187 Score = 91.5 bits (100), Expect = 2e-13 Identities = 265/402 (66%), Gaps = 11/402 (3%) Strand=Plus/Plus Query 156572 GAACTCAAAAGGAAACTCTACCGAGCAGTCCTCAACGTCAATATTCTTGAAGGCATTAGG 156631 || || |||| |||||| |||| ||| | | || |||||| | |||| ||| | Sbjct 2330 GAGCTGAAAAAGAAACTTTACCTGGCAATGATGTCGGTAAATATTTTAGAAGCGATTCGT 2389 Query 156632 TTCTATGTCTCCTTCGCTTGCTCGTTTGCGTTTGGTGAACTCAAAGTTATGGAAGGATCC 156691 || |||||| ||| || |||||||||||||||| ||| | || | |||||||| | Sbjct 2390 TTTTATGTCAGCTTTGCCTGCTCGTTTGCGTTTGCTGAGCGTGAATTGATGGAAGGTAAC 2449 Query 156692 GCTAAGATTATCTCTCTTATCGCCAGAGATGAAAGCCAACATCTTGTC-CTTACTCAACA 156750 ||||| || ||| ||||| ||| | |||||| | |||| || || ||||| || Sbjct 2450 GCTAAAATAATCAAGCTTATTGCCCGCGATGAAGCGCTACAT-TTATCTGGCACTCAGCA 2508 Query 156751 GATCATCAAAAAGTGGCAAGATGGT---GACGATGAAGAAATGGTACGAATCGCTGAAGA 156807 || | || | |||||| ||| |||||| |||||||| || || | || | Sbjct 2509 TATTTTAAATATTATGCAAGACGGTAAAGACGATCCAGAAATGG--CG-ATTGTTGCCGC 2565 Query 156808 AGAAAAACCCAAC---GTTCTAAAGATGTTTCAGAACGCAGTTGAAGAAGAGAAAGCATG 156864 | | | || | | || |||||| | |||| | || |||| |||| ||| Sbjct 2566 GCAGTGCCGCGACGAAGCAATTAAAATGTTTGTGGACGCTGCAGAGCAAGAAAAAGAATG 2625 Query 156865 GGCACAATACTTATTCAAGAACGGATCTATGATAGGTCTGAATGAGAAACTACTAGGACA 156924 ||| | ||||||||||| | || || ||||| || | ||| | | | || | || Sbjct 2626 GGCCGAGTACTTATTCAAAGATGGCTCAATGATTGGCTTAAATAAACACATTTTATGTCA 2685 Query 156925 GTATGTTGAGTTCACTGCTAACAGAAGAATGAAAGCAATAGG 156966 ||| ||||| | || | | ||| |||||| ||| || || Sbjct 2686 GTACGTTGAATACATTACCAACGCTCGAATGACAGCCATTGG 2727 >seq409479 Length=405 Score = 91.5 bits (100), Expect = 2e-13 Identities = 162/234 (69%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 159547 ATTATGATTACATATCCATCTACACATGGTGTATTTGAAACAAACATCAGACAGATATGT 159606 || ||||| || || || |||||||| || || | ||| | ||| | | ||||| Sbjct 3 ATCATGATCACCTACCCTTCTACACACGGCGTGTACGAAGAAGCCATTCAAGAAGTATGT 62 Query 159607 AAGATTGTTCATGAGAATGGTGGTCAGGTATATCTTGATGGTGCAAATCTAAATGCACAG 159666 | || ||||| |||||| || || || || ||||| ||||| | |||||||| Sbjct 63 GAATGGGTACATGAAGCTGGTGGCCAAGTTTACCTAGATGGCGCAAACATGAATGCACAA 122 Query 159667 GTAGGTCTAGCAAAACCATGTGACTAT-GGTGCAGATGTATGTCATCTAAACTTACATAA 159725 |||||| || ||| ||| | ||| || | ||||| | || || ||||| ||||| Sbjct 123 GTAGGTTTAACAACACCGGGCTT-TATCGGCTCTGATGTTTCACACCTTAACTTGCATAA 181 Query 159726 GACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGT 159779 ||||||||||||||||| || || || || || || | || || || || || Sbjct 182 AACATTCTGTATTCCACACGGCGGCGGCGGCCCAGGTATGGGACCAATCGGCGT 235 >seq95357 Length=3550 Score = 84.2 bits (92), Expect = 3e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 158560 GGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAA 158619 ||||| ||| ||| | | || || ||||| ||||||||||| ||| | ||||||||| Sbjct 2339 GGTAAGGAAGTGTACCGGCTTGCTCTGCAGACCAGAGAGCAGCACATCCGCAGAGACAAA 2398 Query 158620 GCAACCAGTAACATCTGCACAGCACA 158645 |||||||| ||||||||||| ||||| Sbjct 2399 GCAACCAGCAACATCTGCACTGCACA 2424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 584188423978720