Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_015289.1 Length=176184 Score E Sequences producing significant alignments: (Bits) Value seq509954 149 7e-31 >seq509954 Length=433 Score = 149 bits (164), Expect = 7e-31 Identities = 248/355 (70%), Gaps = 4/355 (1%) Strand=Plus/Plus Query 115616 TTGCTCAAGACCTGAAGGCAATTCATGGTTTAGATGCTGAGCAGGAACTCGCTAACATCC 115675 ||||||| || |||| || | ||||| || || || || | ||||| || || || | Sbjct 1 TTGCTCAGGATATGAAAGCTGTACATGGCTTGGACGCAGAAGAAGAACTTGCAAATATTC 60 Query 115676 TTAGCACTGAGATCCTTGCTGAGATCAACCGTGAAGTTGTTAGAACCATCTACACAAACG 115735 || ||||| || ||||| || || |||||||| | || | ||| | || ||| | Sbjct 61 TTTCAACTGAAATTCTTGCAGAAATTAACCGTGAGCTAATTCGTACCGTATATGCAACTG 120 Query 115736 CTGTTGCTGGTGCTCAAAACAACACTGCTAACGCTGGTATCTTCGACCTCGACGTTGATT 115795 | ||||||| |||| | || ||||||||||||||||| | ||||| ||| Sbjct 121 CAAAACCTGGTGCACAAACTGGTTCAGCAAACGCTGGTATCTTCGATTTAGACGTAGATG 180 Query 115796 CTAACGGTCGTTGGTCTGTTGAGAAGTTCAAAGGTCTTCTGTTCCAGATCGAAAGAGATG 115855 | || ||||| ||||| || || || |||||||| ||| ||||||| || ||| | |||| Sbjct 181 CAAATGGTCGCTGGTCAGTAGAAAAATTCAAAGGACTTATGTTCCAAATTGAACGTGATG 240 Query 115856 CTAACGCAATCGGTCATCAGACAAGACGCGGGAAGGGCAACATCCTGATCGCTTCTGCTG 115915 ||||| ||||| | | | || ||||| || || || ||| | | ||| ||| ||| Sbjct 241 CTAACCAAATCGCTAAAGAAACCAGACGTGGTAAAGGTAACTTTATTATCTGTTCATCTG 300 Query 115916 ATGTTGTATCTGCCCTCGGCATG--GCTGGCGTTCTTGACTACGCTCCTGCTCTC 115968 | || | |||| | | ||| || ||||| | ||||| | ||| |||||| || Sbjct 301 ACGTAGCTTCTG-CATTGGC-TGCTGCTGGAATCCTTGATTTCGCACCTGCTATC 353 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559958239028480