Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_015290.1 Length=182180 Score E Sequences producing significant alignments: (Bits) Value seq509954 150 2e-31 seq519289 98.7 1e-15 >seq509954 Length=433 Score = 150 bits (166), Expect = 2e-31 Identities = 221/313 (71%), Gaps = 0/313 (0%) Strand=Plus/Plus Query 116250 TTGCTCAGGACTTGAAAGCAATTCATGGTCTTGATGCCGAGCAAGAGCTAAGCAACATTC 116309 |||||||||| ||||||| | ||||| | || || || |||| || || |||| Sbjct 1 TTGCTCAGGATATGAAAGCTGTACATGGCTTGGACGCAGAAGAAGAACTTGCAAATATTC 60 Query 116310 TCTCAACAGAGATCCTTGCTGAAATCAACAGAGAAGTTGTTAGAACTATCTACACAAACG 116369 | ||||| || || ||||| ||||| ||| | || | || | || | || ||| | Sbjct 61 TTTCAACTGAAATTCTTGCAGAAATTAACCGTGAGCTAATTCGTACCGTATATGCAACTG 120 Query 116370 CTGTTGCTGGTGCTCAAAACAATACTGCTACTGCTGGTATCTTCGACCTTGACGTTGACT 116429 | ||||||| |||| | | || | |||||||||||||| | ||||| || Sbjct 121 CAAAACCTGGTGCACAAACTGGTTCAGCAAACGCTGGTATCTTCGATTTAGACGTAGATG 180 Query 116430 CAAATGGTAGATGGTCAGTTGAGAAATTCAAAGGACTTCTTTTCCAGATAGAAAGAGATG 116489 |||||||| | |||||||| || ||||||||||||||| | ||||| || ||| | |||| Sbjct 181 CAAATGGTCGCTGGTCAGTAGAAAAATTCAAAGGACTTATGTTCCAAATTGAACGTGATG 240 Query 116490 CTAACGCTATCGGTCAGCAAACTCGTCGTGGGAAGGGCAACATCTTGATCTGCTCTGCAG 116549 ||||| |||| | | |||| | ||||| || || ||| | | ||||| || | | Sbjct 241 CTAACCAAATCGCTAAAGAAACCAGACGTGGTAAAGGTAACTTTATTATCTGTTCATCTG 300 Query 116550 ACGTTGCTTCTGC 116562 |||| |||||||| Sbjct 301 ACGTAGCTTCTGC 313 >seq519289 Length=421 Score = 98.7 bits (108), Expect = 1e-15 Identities = 85/104 (82%), Gaps = 1/104 (1%) Strand=Plus/Minus Query 38513 AGGGATTACACCCTACACAGAAACCAGTAGGATTAATGGAGTATATGATTAAGACATACA 38572 || |||||||||||||||| || ||||| | | | |||||| | |||||||||||||||| Sbjct 341 AGAGATTACACCCTACACAAAAGCCAGTGGAACTCATGGAG-ACATGATTAAGACATACA 283 Query 38573 CTAATAAAGGTGAAACTGTTCTTGATAGTACTATGGGAAGTGGT 38616 || || ||||||| ||||| || ||| || ||||| |||||| Sbjct 282 CTGATGAAGGTGAGACTGTCCTAGATTTCACCATGGGTAGTGGT 239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579019402628800