Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_015292.1 Length=84565 Score E Sequences producing significant alignments: (Bits) Value seq309203 127 1e-24 seq437693 98.7 5e-16 >seq309203 Length=1072 Score = 127 bits (140), Expect = 1e-24 Identities = 197/279 (71%), Gaps = 2/279 (1%) Strand=Plus/Plus Query 50959 AGAAATGAGCCGTGGCACAACCGACCTGTTCATACACCCTTCTTAGGTGGTATCAACCAG 51018 |||||||| |||| || ||| ||||| | ||||| || | || | | | ||| | Sbjct 756 AGAAATGAACCGTTCCATAACAGACCTATACATACTCCACTAGGAGATATTGTAAACAAC 815 Query 51019 CTTGGTAACGCAGCCGATGCTGAAGTTTGGTTCACAGATGCTTGTTATCTTCTGTACCGT 51078 || ||||| || ||||||| ||| ||||||||| |||||| ||||||||||| | Sbjct 816 CTAGGTAATGCTGCCGATGGTGAGGTTTGGTTCTTAGATGCGTGTTATCTTCTTTGGAAG 875 Query 51079 ATCACTGGTGAAGAGAAGTACAAAACTGCACTGGAAAGTGTATTCTTCACAGCGAACGAA 51138 ||||| | || | ||||| | || | || |||||| | |||||| || || Sbjct 876 GCTACTGGCAAGGATCACTACAAGAAGGCTTTAGATAGTGTACATTACACAGCCAATGAG 935 Query 51139 TATACAGAGATTGACTCAACTGACAAGTTTTTCCGTCAAAGTC-TTTCTGCTGAGACACC 51197 |||||| |||||||| ||| | ||||| |||||| | || | | | ||| | ||||| Sbjct 936 TATACATTCATTGACTCTACTAATAAGTTCTTCCGT-AGAGACATGACAGCTAACACACC 994 Query 51198 TTTTACGGACGCTATCAGTTACGGGTTCTCATACCCTGC 51236 |||||| || | ||| ||||||| | ||| ||||| || Sbjct 995 TTTTACCGAAGGTATTAGTTACGACTACTCTTACCCCGC 1033 Score = 95.1 bits (104), Expect = 7e-15 Identities = 167/241 (69%), Gaps = 2/241 (1%) Strand=Plus/Plus Query 49825 TGGGATGCCTATATCAACTATTTCTACAAAGGTCAGGAAATCCCTTCCACACCATCTCGT 49884 ||||| || ||| | || ||||| ||||| ||| || ||| |||||| ||| Sbjct 237 TGGGAGGCGTATGTACGCTGGTTCTATAAAGGACAGCCTATTCCTGACACACCTCAACGT 296 Query 49885 TACATCTGTAACTGGATTATCAACGGGAAACAACCTACTCTTGCAGATTATCCAGTAAAC 49944 | | |||||||||||||| || || || | ||| || ||| | |||||| | ||| Sbjct 297 TGGGTTTGTAACTGGATTATAAATGGTAAGGAGCCTGTACTGGCAAACTATCCACTCAAC 356 Query 49945 CCCGAAGAACCTACTCAGGGTGGATTCAAATGTGTACCTATCGAGTTCACTAACGGTGTT 50004 ||| || |||||||| ||||| ||||| || |||| | | | |||||||| || Sbjct 357 CCCATTGACCCTACTCATGGTGGTTTCAAGGGTATACCACTAAACTGGACTAACGGACTT 416 Query 50005 GGTCGGATTCCTCACGGTGCTCCTTTTTGGGGTGAATATCTTGACTCTTG-TACGTTTGC 50063 |||||| | |||||||||| |||||||| ||| | || | | | ||| ||||| Sbjct 417 ACCAAAATTCCTAAGGGTGCTCCTTACTGGGGTGAGTATTTAGA-TGTAGCTACCTTTGC 475 Query 50064 T 50064 | Sbjct 476 T 476 >seq437693 Length=1718 Score = 98.7 bits (108), Expect = 5e-16 Identities = 170/246 (69%), Gaps = 6/246 (2%) Strand=Plus/Plus Query 50929 CCTGTTGATTTTGGTGGTTACGAGTTTGCAAGAAATGAGCCGTGGCACAACCGACCTGTT 50988 ||||| || |||||||||| ||| ||||||||||| | || ||| |||| | Sbjct 951 CCTGTAGAGCATGGTGGTTACATCATTGACAGAAATGAGCCATTCCATAACAGACCATTG 1010 Query 50989 CATACACCCTTCTTAGGTGGTATC---AACCAGCTTGGTAACGCAGCCGATGCTGAAGTT 51045 || || ||||| ||||| || || | | |||||||| || |||| |||||| Sbjct 1011 CACACTCCCTT---AGGTGAGATTGTGAATAACATGGGTAACGCTGCTGATGGTGAAGTA 1067 Query 51046 TGGTTCACAGATGCTTGTTATCTTCTGTACCGTATCACTGGTGAAGAGAAGTACAAAACT 51105 |||||| |||||||||||| | ||| | || ||| ||| |||||||| | Sbjct 1068 TGGTTCTTAGATGCTTGTTACTTAATGTGGAAAGTTACCGGTAGAGAAAAGTACAAGAAG 1127 Query 51106 GCACTGGAAAGTGTATTCTTCACAGCGAACGAATATACAGAGATTGACTCAACTGACAAG 51165 ||| |||| |||| || |||||||||||||| ||| || ||||| | | | || Sbjct 1128 GCATTGGACTGTGTTCATTTTACAGCGAACGAATACACATTCATCGACTCTAGTAATAAA 1187 Query 51166 TTTTTC 51171 |||||| Sbjct 1188 TTTTTC 1193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 268750875299972