Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_015293.1 Length=30651 Score E Sequences producing significant alignments: (Bits) Value seq215494 587 1e-163 seq260826 340 3e-89 seq510320 221 2e-53 seq311730 161 2e-35 seq518294 134 3e-27 seq523693 131 3e-26 seq425038 114 3e-21 seq504560 93.3 8e-15 seq517135 86.0 1e-12 >seq215494 Length=798 Score = 587 bits (650), Expect = 1e-163 Identities = 609/798 (76%), Gaps = 2/798 (0%) Strand=Plus/Plus Query 13816 ATCGCCTTAGTAAATGAGGCAATGCGTGGCGACTTCAAAGAAGAAGCTATTTGGAATAAC 13875 ||||| ||| | || || |||||| ||| ||||| ||||||||||| |||||||||||| Sbjct 1 ATCGCTTTAATTAACGAAGCAATGGCTGGTGACTTTAAAGAAGAAGCAATTTGGAATAAC 60 Query 13876 GTCTCTGATGCACTTCGCGATGTAGACGCTTACGCGGCACAGGCTGCCGTTGCTGCAACT 13935 || ||| | || | || ||||| || || ||||| | || || |||| ||||| ||| Sbjct 61 GTTTCTAACGCTTTGCGTGATGTTGATGCGTACGCAGTTCAAGCAACCGTAGCTGCTACT 120 Query 13936 GGTTTGTCTCAAGATCAAATCAATGACGTTAAAACAATGAAAGCGTTTGGCCCTATAAAA 13995 ||||| || |||||||||||||| |||||||| || |||||||| |||||||| || ||| Sbjct 121 GGTTTATCGCAAGATCAAATCAACGACGTTAAGACCATGAAAGCATTTGGCCCAATCAAA 180 Query 13996 TGGGAGCCAAATCAGCTAGCTTGGATTGGTAAAAATCCGGGTGAGGCACTTAGCGTTATC 14055 ||||| ||||| |||||| | |||||||| ||||| || || || || | ||||||||| Sbjct 181 TGGGAACCAAACCAGCTAACATGGATTGGCAAAAACCCTGGCGAAGCTATGAGCGTTATC 240 Query 14056 TCTGAGTCTTTATCAATGGCTATCATGCAAGATCAGGTTAACAAGGCTATCGGCGTGCTT 14115 ||||| || |||||||||||||||||||||| || |||||||| ||||| || ||||| Sbjct 241 TCTGACTCGCTATCAATGGCTATCATGCAAGACCAAGTTAACAAAGCTATTGGTGTGCTG 300 Query 14116 GTAGCTGCTATCGGTAACGAGGCTAGTGCTAACATTGATGTTTCTGCNNNNNNNNGTGAT 14175 || |||||| | ||||| ||||| | |||||| |||| || ||||| || Sbjct 301 GTTGCTGCTTTAGGTAATGAGGCAACGGCTAACCTTGACGTATCTGCCGAGCTTGCAGAA 360 Query 14176 TTAGGCGCAGTTACTCAAGTCAACTTAAACAAAACTCATGCGCTGTTTGGTGACTCATCA 14235 |||||||| |||||||| |||||||||||| | || || | | || ||| | || Sbjct 361 GCTGGCGCAGTAACTCAAGTTAACTTAAACAAAGCACACGCTTTATACGGCGACGCTTC- 419 Query 14236 ATGAATCTT-GGCACGCAAGTTATGACAGGCTCGACCGCCCACAAAATTCTAGGTCAAGC 14294 | | ||| | |||||||||||||| | || | || ||| | || || ||||| Sbjct 420 TGGTAGCTTAGAGTATCAAGTTATGACAGGTGCAACGTCTCATAAACTACTTGGCCAAGC 479 Query 14295 TCTAGTTAATGGCGCTCAGTTATTCAGTGAAGGTACTGTTAGAGTAATTGATATACTAGG 14354 | | ||||||||||| |||||||| || ||||| |||||| |||| |||||||| || || Sbjct 480 TTTGGTTAATGGCGCGCAGTTATTTAGCGAAGGCACTGTTCGAGTTATTGATATTCTTGG 539 Query 14355 TAAGCGATCTCTTATCACTGATAGCCCTGCGTTGGTTGCTGGTGGCAAGGAACGCGTATT 14414 |||| | || |||| ||||||||||||||||| |||||| | || || |||||| | Sbjct 540 TAAGAAAACTGTTATTACTGATAGCCCTGCGTTAAGTGCTGGCAGTAAAGAGCGCGTACT 599 Query 14415 ATCACTATCACCAATGGCGGCAACTATCGCAGCAAACAATGATTTCCGCAGCGTTCTCGT 14474 ||| ||| | | | || || ||||||||| | ||||||||||||||||||| |||| Sbjct 600 ATCGCTAACTCAAGGTGCTGCTACTATCGCATCTAACAATGATTTCCGCAGCGCAATCGT 659 Query 14475 TGAGAGTACAGGAAATACGCGATTAGAGACAACTTACCAAGCCGAGTATACTGAAAACGT 14534 ||| || || | || ||| | ||||| |||||||| || || || |||||||| Sbjct 660 TGAAGGTGTTGGTAGCACACGACTTGAGACTGTATACCAAGCTGAATACACAGAAAACGT 719 Query 14535 TGGCGTTAAAGGCTACTCTTGGAACACCGCTGTCAAATCACCAGTCAAGTCACAGCTAGA 14594 |||||||| ||||| ||||| ||||| || |||||||| || || ||||||| || Sbjct 720 ATCAGTTAAAGGTTACTCGTGGAATACCGCAGTTAAATCACCTGTTAAAGCACAGCTTGA 779 Query 14595 AACTGGGACAAACTGGAC 14612 |||||| || |||||||| Sbjct 780 AACTGGTACTAACTGGAC 797 >seq260826 Length=726 Score = 340 bits (376), Expect = 3e-89 Identities = 393/527 (75%), Gaps = 2/527 (0%) Strand=Plus/Plus Query 2355 GCTAGTTTAATTACTGTTTTTGCGTCACCTTCTGCAATGCCATTTTCGACCAGTACAGAT 2414 || || || || || || ||||| ||| |||| |||||||||||| |||||| | Sbjct 199 GCCAGCTTGATAACGGTCTTTGCATCATCTTCGCTAATGCCATTTTCAACCAGTGTGGCA 258 Query 2415 AGGATAGCATTGTTAATTTGCTTTTTATGCTCGGTATCAGCTTCACGCTTTAGCCTTACG 2474 || || |||||||||| | | || ||| | |||||||| |||||||||||||| || Sbjct 259 AGTATTGCATTGTTAACTCTCGCCTTGTGCGCTGTATCAGCCTCACGCTTTAGCCTGTCG 318 Query 2475 TTTTCTTCTCGCTGCAATTGCGCTTGTCGTGCATTCTCAGCGTCAATAAGTGCTTGCTTT 2534 | ||||| ||||| || || |||||||||||||||||||| ||||| | ||||||||| Sbjct 319 TGCTCTTCACGCTGTAACTGTGCTTGTCGTGCATTCTCAGCATCAATTAACGCTTGCTTT 378 Query 2535 GCCGCTTGCTCAGCTATTTGTTTCTCGCGCTCTTCCTGCTGCTTACGCTCAGCTTCTCGT 2594 ||||||||||| |||||||| || ||||||||| | ||||||| ||||| ||| Sbjct 379 GCCGCTTGCTCGGCTATTTGCTTTTCGCGCTCTGCTTGCTGCTGGCGCTCTTTTTCAGCA 438 Query 2595 TGCGCCTCACGCTCT-TTAGCTTCTAAATCCCATAGGCGATTCAATTTTAAAGCATCTTC 2653 | || || |||||| | || || | ||||| || ||| | || || || ||||| Sbjct 439 TTAGCTTCGCGCTCTAATTGC-TCGTATTCCCAAAGTTTATTAAGTTGCAACGCTTCTTC 497 Query 2654 GTGGTCACGCTCTACTTGCTCGGCCAATTCTTTTTCTGCCTGAATACGCTTTTCTTCATC 2713 ||| ||||| || | ||| | | ||| |||| || || | |||||||||||||| Sbjct 498 GTGATCACGTTCAATTTGTGCCTGTAGCTCTATTTCAGCTTGTAGGCGCTTTTCTTCATC 557 Query 2714 AAGAATGCGCTTGCGCCCTGCATTCCATTCATCAATCAAGGCAGTGAATGGGCTATTTGC 2773 || | ||||||||| || ||||||| || ||||| || || || || | ||||| Sbjct 558 GAGTACACGCTTGCGCTCTACATTCCACTCGTCAATTAAAAGCGTAAACGGCTTGTTTGC 617 Query 2774 TTTTTCAAGGCGGGATTTAATCTCTTTAGCCTCAGCTTCAACTTGCGCTTTGTACTGCTT 2833 |||||||| || ||||| |||||||| || | |||||| |||||||| || ||||| Sbjct 618 GTTTTCAAGTCGATGCTTAATTTCTTTAGCTTCTGATTCAACCTGCGCTTTATATTGCTT 677 Query 2834 GGATAAATCAATACGCTTGCGGTCTAGCTTCTTAATTAGCTCATTAA 2880 |||| || |||||||||||||||||||| |||| || || |||| Sbjct 678 TGATAGGTCGATACGCTTGCGGTCTAGCTTTTTAAGTAAGTCGTTAA 724 >seq510320 Length=522 Score = 221 bits (244), Expect = 2e-53 Identities = 311/428 (73%), Gaps = 23/428 (5%) Strand=Plus/Plus Query 13208 GCAGAAAAAGAGCGTCAAGCAGACTTGGAAGCTAAAGAGCTTGAGAGCAAAAAGAAAAAC 13267 || ||||| ||| || |||| | ||||||||||||||||| ||||||||||||||| Sbjct 48 GCTGAAAACACGCGCAAATCAGAGCTTGAAGCTAAAGAGCTTGAAAGCAAAAAGAAAAAC 107 Query 13268 GGGCAGCATGAGGAAATTCTTGAGCACTTCAAGACTCAAGCCCAGCGCAAAGAAGAAG-- 13325 || |||||||| ||||| || || || || || |||||||| | |||||| ||| Sbjct 108 GGCCAGCATGAAGAAATACTAGAACATTTTAAAACTCAAGCTGAA---AAAGAAAAAGCT 164 Query 13326 -AGCTTCAAGCTAAATTGGACGAGTTAAGCGGTAGCATTAAGCAGAAAGAAAAGACCGCA 13384 | | || | | | || ||||||| || || ||| | ||||||| ||| Sbjct 165 GAATTAAAATCACAGCTTGAAGAGTTAACAAACAGTGTTC-GCA--ATGAAAAGAAAGCA 221 Query 13385 ---GTAGTAAACGATTTGGCTTCAATGGGTACT---GATTCAACCCGCGCAGCATTAAAG 13438 ||||| || || | || ||| |||| || ||| || ||||||||||||||| Sbjct 222 AGTGTAGTTAATGAGCTTGCATCATTGGGAACAACCGATACA---CGCGCAGCATTAAAG 278 Query 13439 CGCTTAATTGATCAAGATTTAGATTTTGGTGAGGATGGTAGCTTAGTTGTGCTTGAAAAT 13498 ||| | |||||| ||||||| ||||| || ||||| |||||||||| | ||| || Sbjct 279 CGCCTGATTGATTTAGATTTAACGTTTGGCGAAGATGGCGGCTTAGTTGTTATCGAAGAT 338 Query 13499 GGCAAGGCAACAAGCATCAAC-CTCGATGAATACAAAGGTAAACTAAAAGAATTATACCC 13557 || || ||| | |||| |||| |||| | ||||||| || ||||||||||||||||| Sbjct 339 GGTAAAGCATCTAGCA-CAACAGTCGAGCAGTACAAAGCCAAGCTAAAAGAATTATACCC 397 Query 13558 ATACCTAATCAGTGAGTCTCACGGTAAAGGTGGCG---GTAGAAGTGGCGCGCTAGGGTC 13614 || || | |||||||||||||| |||||||||| ||||| ||| | | ||| || Sbjct 398 ATCTTTAGTAAGTGAGTCTCACGGCAAAGGTGGCGTTAGTAGAGGTGCGGGGTCAGGTTC 457 Query 13615 TGGCGGCA 13622 |||||||| Sbjct 458 TGGCGGCA 465 >seq311730 Length=9896 Score = 161 bits (178), Expect = 2e-35 Identities = 218/303 (72%), Gaps = 8/303 (3%) Strand=Plus/Plus Query 1979 CATTTGACCAGAAAAGCCATCAACAACAATTTCAGTGGTGTACTTTTCTTGACCTTGTTG 2038 |||||| || | ||| || ||||| ||||||||||| ||||| |||||||| |||||| | Sbjct 2687 CATTTGGCCGGTAAAACCGTCAACTACAATTTCAGTCGTGTATTTTTCTTGGCCTTGTGG 2746 Query 2039 GTCAGTCCATTTGCGGGTTTTTAACTTGCCTTCAATGTATAGCTTACTACCCTTACGTAC 2098 |||||||||||| || |||| | || ||||||| || | | ||| ||||| Sbjct 2747 GTCAGTCCATTTACGTGTTTGAAGTTTACCTTCAACATAAATTTGTGAACCTTTACGGCA 2806 Query 2099 ATACTCGCCGATTATTTCAGCTAACTTTCCAAAAACAACAATTCTGTGCCACTCGGTTTC 2158 ||| || || | ||||| |||||||| ||||||| || | | ||||||||| |||| Sbjct 2807 ATATTCACCAACAATTTCTGCTAACTTGCCAAAAAATACCACACGGTGCCACTCAGTTTT 2866 Query 2159 TT----CTTTTGGCTCGCCAGTGCTTTTATCCTTCCATTTTTCGCTAGTTGCTAGAGTTA 2214 | | |||| ||||||| |||| || || | | || |||||||| || | Sbjct 2867 ATCAACCATTTG----GCCAGTGTTTTTGTCTTTGTAGCTATCTGAAGTTGCTAAGGTGA 2922 Query 2215 GGTTTGCCACTGCATTTCCGTTAGGTATGTAACGAATTTCTGGATCTTGACCAGCATTAC 2274 ||||| || | || |||||||| || ||||| | ||| |||||||| || ||||| Sbjct 2923 TATTTGCTACACCGTTGCCGTTAGGCATATAACGTACTTCAGGATCTTGTCCTAAATTAC 2982 Query 2275 CAA 2277 ||| Sbjct 2983 CAA 2985 >seq518294 Length=326 Score = 134 bits (148), Expect = 3e-27 Identities = 138/178 (78%), Gaps = 3/178 (2%) Strand=Plus/Plus Query 3057 TTATTTGATCTGCAACTTGGTTAGATACCGCAAAACCATTTGCTTTTAATTCGCCGATAA 3116 |||||||||| ||||| |||||||| || | ||||||| || ||||||||||| |||| Sbjct 4 TTATTTGATCGGCAACCTGGTTAGACACTGTAAAACCACCCGCCTTTAATTCGCCAATAA 63 Query 3117 TCATATCAGCCGTTTTTGCACCACTTTGAATATCAACTAACATAAACTGCTTGTCGTTTT 3176 ||||||| || ||||| ||||| ||||||||||| || | ||| ||||||| || | Sbjct 64 TCATATCCGCAGTTTTAGCACCGCTTTGAATATCTACCAGCATGTACTGCTTATCAGCCT 123 Query 3177 CAAAGTTGTTGTACCAGTTAGCGTT-TTTGCTTG--ACTGCTTAGCAGGCGCTTTTTG 3231 | || ||||||||| || | || | ||||| |||||| || ||||||||||| Sbjct 124 CGAAAGAGTTGTACCAATTCACATTACTAGCTTGCTTCTGCTTTGCTGGCGCTTTTTG 181 >seq523693 Length=695 Score = 131 bits (144), Expect = 3e-26 Identities = 215/300 (72%), Gaps = 9/300 (3%) Strand=Plus/Minus Query 1997 ATCAACAACAATTTCAGTGGTGTACTTTTCTTGACCTTGTTGGTCAGTCCATTTGCGGGT 2056 ||| || ||||||||||| |||||||| ||||| || |||||| |||| || || || Sbjct 376 ATCGACGACAATTTCAGTTGTGTACTTGTCTTGGCCGCTTTGGTCTTTCCACTTACGTGT 317 Query 2057 TTTTAACTTGCCTTCAATGTATAGCTTACTACCCTT-ACGTACATACTC-GCCGATTATT 2114 | || || ||||||| ||| | ||| | | |||| ||| | ||||| |||| | ||| Sbjct 316 CTGCAATTTACCTTCAAGGTAAA-CTTGCGAACCTTTACGCAGGTACTCAGCCG-TGATT 259 Query 2115 TCAGCTAACTTTCCAAAAACAACAATTCTGTGCCACTCGGTTTCTTCTTTTGGCTCGCCA 2174 ||||||||||| || || | || | | |||||||||||| ||||| | | | | | Sbjct 258 TCAGCTAACTTGCCGAACATCACCACGCGGTGCCACTCGGTACGTTCTTGTTG-TTGACC 200 Query 2175 GTGCTTTTATCCTTCCATTTTTCGCTAGTTGCTAGAGTTAGGTTTGCCACTGCATTTCCG 2234 || || || ||||| |||||| || || || || | || ||||| ||||| || Sbjct 199 CTG--TTGGTCTTTCCAAGATTCGCTGGTAGCAAGGGTAATATTGGCCACGGCATTGCCA 142 Query 2235 TTAGGTATGTAACGAATTTCTGGATCTTGACCAGCATTACC-AATAATTTGAACCTTGTT 2293 || || || ||||| | ||| |||||||| || ||| || | |||| || || ||||| Sbjct 141 TTTGGCATATAACGCACTTCGGGATCTTGGCCTAAATTGCCGACTAATATG-ACTTTGTT 83 >seq425038 Length=775 Score = 114 bits (126), Expect = 3e-21 Identities = 227/330 (69%), Gaps = 11/330 (3%) Strand=Plus/Plus Query 21496 GCACAGCAAGGTGTTATAGCCATCGCCCAGAGAGCTTCCACAGATATCGAAGGTGTTGCA 21555 || ||||| ||||| || | || ||||| |||| | ||||| ||||| || Sbjct 433 GCGCAGCAGGGTGTCATTTCAATAGCCCAACAAGCTGGCGTTGATATTAGCGGTGTGGCT 492 Query 21556 ACGGCTTATTCAAG-ATTGTCGCAAGCGACTACTGATTTGAACTTGAGTCAAGAACAACT 21614 ||||| || | |||| | ||| | ||| |||| ||| | ||||| || | | Sbjct 493 GATGCTTACTCTCGTATTG-CTCAATCAACTTCTGAGTTGGGGATTAGTCAGGAGCGTAT 551 Query 21615 GCTAGACGTAACGAACAAGTTAACGCTTGCTTTAAAAGCTGGTGGGGCAACAG---CGGA 21671 |||| || || | || ||||||||| ||||| ||||||||||| |||| | || Sbjct 552 CTTAGATGTGACCAGGAAAACAACGCTTGCATTAAAGGCTGGTGGGGCTACAGGATCTGA 611 Query 21672 AGAAACTAGCTCTGTTATGATTCAGCTTGCGCAAGGTTTAGGTTCTGGCGCTTTGCAGGG 21731 | | | ||| |||||||||||||||| |||| | | ||||| || || |||||||| Sbjct 612 AACATCAAGC---GTTATGATTCAGCTTGGCCAAGCTCTTGGTTCAGGTGCGTTGCAGGG 668 Query 21732 TGACGAATTAAGATCAATTCTAGAATCATCAATCCCAATCAGCAAAGCATTAGCGAAAGA 21791 ||| || | |||||||| || ||| |||| || || || | || || |||| || || Sbjct 669 TGATGAGCTTAGATCAATACTTGAAGCATCTATACCTATAACGAAGGCTCTAGCAAAGGA 728 Query 21792 ATTCAACAC--CAACGTTGGCAGCCTAAAA 21819 || ||| | | || | |||||| ||||| Sbjct 729 GTTTAACGCTACTAC-TGGGCAGCTTAAAA 757 >seq504560 Length=789 Score = 93.3 bits (102), Expect = 8e-15 Identities = 95/123 (77%), Gaps = 1/123 (1%) Strand=Plus/Minus Query 9510 AATTAA-AGGAGAAAGAAATGAGATTTAAATTCAATGTTGATGTGTATGACTTTAAAGTT 9568 |||||| ||||||| ||| |||||||||||||||||||||| || || || || | || Sbjct 123 AATTAACAGGAGAATGAAGTGAGATTTAAATTCAATGTTGACGTTTACGATTTCAGCGTG 64 Query 9569 ACATTTACCGATGAAAAGGATTATGCAGATAGGGCCACTAACAATGGAAGTGGTGTAGAT 9628 || || || ||| |||| |||||||| |||| ||| | || |||| || | ||||| Sbjct 63 ACGTTCACAACTGATAAGGCGTATGCAGACAGGGTAACTGAAAACGGAACTGATATAGAT 4 Query 9629 TAT 9631 ||| Sbjct 3 TAT 1 >seq517135 Length=240 Score = 86.0 bits (94), Expect = 1e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 1961 TTTACTATCAAGCATAATCATTTGACCAGAAAAGCCATCAACAACAATTTCAGTGGTGTA 2020 ||||| ||| | ||| |||| ||| ||| || | | ||| ||||||||||| || Sbjct 48 TTTACCATCTAACATTTGCATTACACCGTTAAAACCTTGTAAAACGATTTCAGTGGTATA 107 Query 2021 CTTTTCTTGACCTTGTTGGTCAGTCCATTTGCGGGTTTTTAACTTGCCTTCAATGTATAG 2080 | |||||||||||||| | ||||| ||||| |||| || |||||||| |||| Sbjct 108 TTGGTCTTGACCTTGTTGATTGGTCCACTTGCGTGTTTGCAAAGAGCCTTCAAGATATAC 167 Query 2081 CTTACTACCCTTACGTACATACTCGCCGATTATTTCAGCTAACTTTCCAAAAACAACAAT 2140 || |||||| || ||| || || |||||||| | ||| ||||| | ||||| Sbjct 168 TTTTGAACCCTTTTTTAAATATTCACCCGCAATTTCAGCAAGCTTGCCAAACATAACAAC 227 Query 2141 TCTGTGCCACTC 2152 | ||||| || Sbjct 228 ACGATGCCATTC 239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97350286676412