Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq59939 109 4e-19 seq152719 102 5e-17 seq152718 89.7 3e-13 >seq59939 Length=800 Score = 109 bits (120), Expect = 4e-19 Identities = 120/160 (75%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 34825 CATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCT 34884 |||| |||||||| ||||||||||| || || | ||||| ||| | || | || |||| Sbjct 9 CATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCT 68 Query 34885 TGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTA 34944 |||| ||||| ||||| | | || | |||| | |||||| |||| ||| | Sbjct 69 TGTCCTGGATCTTGGCCTTGACATTTTCGATTGTGTCACTAGGCTCAACCTCGAGGGTGA 128 Query 34945 TGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 |||| || |||||||| |||||||||||||||||||| || Sbjct 129 TGGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCATGTT 168 >seq152719 Length=2073 Score = 102 bits (112), Expect = 5e-17 Identities = 163/232 (70%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||| ||||| | || || | || || ||| ||||||||| |||||||| || || Sbjct 500 CCTCCTCTCAAGCGCAGCACAAGATGGATGGTGGATTCTTTCTGGATGTTATAATCTGAC 559 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 | | | || |||| |||||||| || |||||||| || || | ||||| || | || Sbjct 560 ATGGTGCGACCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCAGGAGGG 619 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAA 34932 | |||||||| || ||||| ||| || || || || | || | || |||| Sbjct 620 ATGCCCTCCTTATCCTGGATCTTAGCTTTTAC--ATTCTCAATGGTGTCGCTGGGTTCAA 677 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 | || | || || || || || || || |||||||||||||||||||| || Sbjct 678 CCTCCAGAGTGATAGTCTTACCAGTCAGGGTCTTCACAAAGATCTGCATCTT 729 Score = 98.7 bits (108), Expect = 6e-16 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||| |||| || ||| |||| ||||| | |||||||| ||||| ||||| || Sbjct 272 CCTCCTCTCAGCCGCAAGACCAGATGAATGCAGGACTCTTTCTGGATGTTGTAGTCGGAG 331 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | || | || |||||||| || |||||||| || || | ||||||||| | || Sbjct 332 AGAGTGCGGCCGTCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCTGGAGGG 391 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAA 34932 | || ||||| || ||||| |||||| || || || | || || |||| Sbjct 392 ATGCCTTCCTTATCCTGGATCTTAGCTTTGAC--ATTCTCAATGGTGTCGTTGGGTTCAA 449 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 | | | || || || || || ||||| ||||||||||||||||| ||| Sbjct 450 CCACCAGAGTGATAGTCTTGCCTGTGAGGGTCTTCACAAAGATCTGAATA 499 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| ||||| || || | || | || |||||||| || |||||||| Sbjct 80 TCTTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCGTCTTCCAGCTGCTTGCCGGCAAAG 139 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | ||||| || | || | |||||||| || ||||| |||||| || Sbjct 140 ATCAGCCTCTGCTGATCAGGAGGGATGCCCTCCTTATCCTGGATCTTAGCTTTGAC--AT 197 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | || | || ||||| || | || |||| || || || || ||||||| Sbjct 198 TCTCAATGGTGTCGCTGGGTTCAACCTCCAGAGTGATGGACTTACCAGTCAGGGTCTTCA 257 Query 34969 CAAAGATCTGCATA 34982 |||||||||||||| Sbjct 258 CAAAGATCTGCATA 271 >seq152718 Length=3078 Score = 89.7 bits (98), Expect = 3e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 |||| |||| || ||| || | || | ||| |||||||| ||| | ||||| || Sbjct 2147 CCTCTTCTCAGCCGCAAGACAAGATGGAGGGTGGACTCTTTCTGGATGCTGTAGTCGGAG 2206 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | || |||| |||||||| || |||||||| || || | | ||| || || Sbjct 2207 AGAGTGCGACCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTGTACTGTTCAGAAGGG 2266 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAA 34932 | || ||||| || |||||| |||||| || || || | || | || |||| Sbjct 2267 ATGCCTTCCTTATCCTGAATCTTAACTTTGAC--ATTCTCAATGGTGTCGCTGGGTTCAA 2324 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 | || | || ||||| || || || || ||||||||||||||||||||| Sbjct 2325 CCTCCAGAGTGATGGTCTTACCAGTCAGGGTCTTCACAAAGATCTGCATA 2374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322554466051056