Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_015457.1
Length=165919
Score E
Sequences producing significant alignments: (Bits) Value
seq449735 194 2e-44
seq506238 138 1e-27
seq509673 114 1e-20
seq351952 102 9e-17
seq487923 98.7 1e-15
seq326422 87.8 2e-12
>seq449735
Length=3187
Score = 194 bits (214), Expect = 2e-44
Identities = 406/595 (68%), Gaps = 19/595 (3%)
Strand=Plus/Minus
Query 137826 AACAGTTCACGGGCTTTAATACGCTTTTTACGAAT--ATTAGGGTCTTTTTCTGCGGCTT 137883
||||||||| |||||||| || ||||||||||| ||| | |||| ||| ||
Sbjct 611 AACAGTTCAATAGCTTTAATGCGTTTTTTACGAATTGATTCG--TCTTGTTCGTAT--TT 556
Query 137884 CATATAATTCACGG-AAACG-GTCTTGGTCTTTAAAATAAGAATAATAAAGCTCACCACC 137941
| |||| | || |||| ||||||||||| |||| | | || ||||| ||
Sbjct 555 TACATAAAGCGCGTCAAACTCGTCTTGGTCTTCAAAAAATGCATCGTAAAGG---CCTGG 499
Query 137942 CATTTCATGTGGACTGAACAAAGTAATGTAGTCGTTCTTTCCAAAACGTTCCATCATTAG 138001
|| ||| || || ||||| ||||||||||||| || ||||| ||||||
Sbjct 498 CACATCAGAGGGGCTAAACAAGGTAATGTAGTCGTCTTTAATTAAACGCGAGTACATTAG 439
Query 138002 GTCATTCAGTTGAACGCCATAATCCATATGACGAATACGGTTTTCTTCTACGCCTTTGTT 138061
| ||| | || ||||| ||||| | |||||| | ||||| || || || || |||
Sbjct 438 TTTATTAAACTGTACGCCGTAATCTAAATGACGCACGCGGTTGTCATCAACCCCGCGGTT 379
Query 138062 ATTTTTCAAAACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATA--ATAAGCAGTA 138119
|||||| | || | || ||||| ||||| |||||||||| || || | ||| ||
Sbjct 378 ATTTTTAAGTACTAACAGGTTTTCTACTTCTAAATGCCAAAGCGGGTAGAACAAG--GTT 321
Query 138120 GCAGCGCCGCCACGAATTCCACCCTGTGAGCATGATTTAACAGCAGTCTGAAAATGTTTC 138179
|| ||||||||||| | || || || || || |||||| || || ||||| || ||
Sbjct 320 GCTGCGCCGCCACGTACACCGCCTTGCGAACAGCTTTTAACCGCTGTTTGAAAGTGCTTA 261
Query 138180 CAAAAAGGAATAACACCAGTATG--ACGTACTTCACCTGTACCAATCTTAGAACCTTCGG 138237
||||||||||| ||| ||||| ||| |||| || | | ||| | ||| |
Sbjct 260 TAAAAAGGAATACAACCCGTATGGTACG--CTTCGCCATTGCGAATGTGGCTACCCAGTG 203
Query 138238 CACGAATCATACCAACGTTAATACCAATTCCAGCGCGTTTGGAGATATATTCAACAATTG 138297
||||||| ||| ||||||| ||||| || || |||| || | |||| ||||||||
Sbjct 202 CACGAATGCGACCTGCGTTAATGCCAATGCCGGCACGTTGCGATACGTATTTAACAATTG 143
Query 138298 AAGCAGAAGCTTTGTTAATAGACTTCAGCGAATCACCTGCTTCAATAACAACGCATGAAC 138357
|| || | |||||| || | || || || || || | || || || |
Sbjct 142 CAGACGAGGTGGCGTTAATTGAATCAAGGCTGTCGCCACACTCTATTAATACACACGAGC 83
Query 138358 TAAACTGCCGAGTTGGAGTACGACAGCCAGCCATAATAGGAGTTGGTAATGAAAT 138412
||||||| || ||||| |||||| || |||||||| || || |||| ||||||
Sbjct 82 TAAACTGGCGTGTTGGCGTACGAACACCTGCCATAATTGGCGTAGGTAGTGAAAT 28
>seq506238
Length=275
Score = 138 bits (152), Expect = 1e-27
Identities = 141/184 (77%), Gaps = 0/184 (0%)
Strand=Plus/Plus
Query 59800 ATTACAGGCTCTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAG 59859
|||||| | || ||||| ||||| | | ||||| |||| ||||| || || | |
Sbjct 38 ATTACAATGTTTCTGTAAATGTACGTGTTAATACGTCTTGCTGTTGTTCTGGTGTTAATG 97
Query 59860 AGTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGAT 59919
||||||| || ||||| ||||| |||||||| || || | || ||||||||||| || |
Sbjct 98 AGTTAAAACGCACTGCGTAACCTGATACACGAATAGTTAATTGTGGATATTTTTCAGGGT 157
Query 59920 GCTTAACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTTACGTTCAGGTGTTGACCAC 59979
| ||||| |||||||||| ||||||||||| | || || ||||| | ||||||||||
Sbjct 158 GTTTAACAGCATCTTCCAATGTTTCACGACGTAACACATTCACGTTTAAATGTTGACCAC 217
Query 59980 CTTC 59983
||||
Sbjct 218 CTTC 221
>seq509673
Length=441
Score = 114 bits (126), Expect = 1e-20
Identities = 140/191 (73%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 138012 TGAACGCCATAATCCATATGACGAATACGGTTTTCTTCTACGCCTTTGTTATTTTTCAAA 138071
|| ||||| |||||||||||||| | |||||| ||||| ||||| |||||||||||
Sbjct 228 TGTACGCCGTAATCCATATGACGGACACGGTTGTCTTCCACGCCGCGGTTATTTTTCAGT 287
Query 138072 ACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCGCCGCCA 138131
|| | | |||||||| |||||||| | || ||| | || || || ||||||
Sbjct 288 ACCAATAATGACTCAACTTCTAAATGCCATAATGGGTAAAACAACGTCGCTGCACCGCCA 347
Query 138132 CGAATTCCACCCTGTGAGCATGATTTAACAGCAGTCTGAAAATGTTTCCAAAAAGGAATA 138191
|| | || || |||||||| ||||||||||||| || || |||| | || || |||
Sbjct 348 CGGACGCCGCCTTGTGAGCAGCATTTAACAGCAGTTTGGAACAGTTTATAGAATGGGATA 407
Query 138192 ACACCAGTATG 138202
||| |||||
Sbjct 408 CAACCCGTATG 418
>seq351952
Length=416
Score = 102 bits (112), Expect = 9e-17
Identities = 134/186 (72%), Gaps = 0/186 (0%)
Strand=Plus/Plus
Query 59801 TTACAGGCTCTCAGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGA 59860
||| || || | ||||||||||| | ||| || || ||| ||||| | ||| | ||
Sbjct 21 TTATAGCGTCGCTGTAAAGGTACGTGTGATTACATCTTGCTTTTGTTCTGCAGTTAACGA 80
Query 59861 GTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATG 59920
|||||| || ||||| ||||| |||||||| || || | || ||||| || || ||||
Sbjct 81 GTTAAATCGTACTGCGTAACCCGATACACGAATTGTTAATTGTGGATACTTATCTGGATT 140
Query 59921 CTTAACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTTACGTTCAGGTGTTGACCACC 59980
| | |||||| | ||||||| || || || ||||| | ||||||||||||
Sbjct 141 TTCCATTGCATCCAATAACATTTCACGGTTCATTACATTAACGTTTAAGTGTTGACCACC 200
Query 59981 TTCAAT 59986
||||||
Sbjct 201 TTCAAT 206
>seq487923
Length=1072
Score = 98.7 bits (108), Expect = 1e-15
Identities = 146/201 (73%), Gaps = 7/201 (3%)
Strand=Plus/Minus
Query 23699 ATACTAATTTATCTAGTACATATTTTTGCCATGCATAATCATTACGGAATCCGAAGACCA 23758
||| |||||||| || |||| || |||||||| ||||||||| |||||||| ||
Sbjct 528 ATAGTAATTTATATA---CATACTTATGCCATGCTAAATCATTACCAAATCCGAATACTG 472
Query 23759 CGTCATTTGAACGCATGTTAACCAC-TGCATTAATTTTCTTATCACGAATCAGGTACT-G 23816
||||| ||| ||| || || | | |||||||| ||||||||||| | |||| |
Sbjct 471 CGTCACATGAGCGCTGATTGACAATATAGATTAATTTA-TTATCACGAATAAA-TACTTG 414
Query 23817 TACTGTATTAGTACACATGAAATCCGACATGCCATCTTTATTGTAGTCAAACTGCATGGA 23876
|| |||||||||| || ||||| ||||| ||| |||| | ||| || || ||
Sbjct 413 AACATTATTAGTACAAATAAAATCTGACATTTCATTAGTATTCCATTCACTTTGAATAGA 354
Query 23877 TGGACGAGTATAAATCATGAT 23897
|| | |||||||||||| ||
Sbjct 353 AGGTCTAGTATAAATCATAAT 333
>seq326422
Length=2068
Score = 87.8 bits (96), Expect = 2e-12
Identities = 90/114 (79%), Gaps = 4/114 (4%)
Strand=Plus/Plus
Query 68527 CGCTCTACCAAACTGAGCTACAC--GGAGTAAATTAAATTGGAGCGGATAATGAGAATCG 68584
||||||||||| |||||||| | | | | |||| |||||||| | | ||||||
Sbjct 292 CGCTCTACCAA-CTGAGCTATATCAGCATCACCATAAACTGGAGCGGGCAGCGGGAATCG 350
Query 68585 AACTCACATCATCAGATTGGAAGTCTGAGGTAAT-GCCATTATACGATATCCGC 68637
||| | ||||||||| ||||||| |||||||||| ||||||||||||| ||||
Sbjct 351 AACCCGCATCATCAGCTTGGAAGGCTGAGGTAATAGCCATTATACGATGCCCGC 404
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 527326010149680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |