Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq496362 205 1e-47 >seq496362 Length=882 Score = 205 bits (226), Expect = 1e-47 Identities = 544/813 (67%), Gaps = 25/813 (3%) Strand=Plus/Minus Query 18775 CCTAATTCTAATAGTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAA 18834 |||| ||||| || |||||||| | |||||| | | |||| |||| | || | Sbjct 822 CCTAGTTCTACTAAAAGTCTATCGGTTACAAACTCTAAATATTGCGTCATTAAATTCGCA 763 Query 18835 TTCATTCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACT 18894 ||||| || ||||| | ||||| |||| ||||||| ||||||| ||| || |||| Sbjct 762 TTCATACCAATTAAACTTACAGGAAGTGATTCTGTAATAAATTCTCTTTCGATGTTTAAG 703 Query 18895 GCCTCTGATATAATAGATACAACTCTATCTTCATTAGGAGGGTATAGAA-----GATGTT 18949 || || ||||| | | | ||| |||| || | | ||| | |||||| Sbjct 702 GCGTCAATAATAATGGTTCTGATTCTGTCTT--TTGGCACTTTATTTACCAAGTGATGTT 645 Query 18950 TAAACATCAAACA-TGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTA 19008 || | || ||| |||||||| || | || ||||| | | |||||||| || Sbjct 644 GGTGCAA-ATGCACTGCGAAATCACAGTGAACACCTTCGTCACGAGAAATCAATTCGTTT 586 Query 19009 GAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGAT 19068 || ||||| || || ||||||| |||| |||||| |||||||| || ||| ||| | Sbjct 585 GAGAATGTCAATCCTGGCATCAAACCTCGTTTTTTCAACCAGAAAATGGAACAAAAAGCA 526 Query 19069 CCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCA 19128 || || ||||| || ||||| |||||||||||||||| | || ||| | | || | Sbjct 525 CCTGAGAAGAAAATTCCTTCCACTGCTGCAAAAGCAATCAATCGCTCTGCGAA---AGAA 469 Query 19129 TCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTC 19188 || | | || |||||||| | |||||| || || |||||||| | | || | Sbjct 468 TC-TGA--ATCAATCCATTGAATTGCCCAGTCCGCTTTCTTTTTGATAGCAGGAAAAACT 412 Query 19189 TCTATAGAATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAAT 19248 |||| | || |||| || ||| || ||||| ||||| | || || || Sbjct 411 TCTAATGCGTTGAATAAATCGGCTTTCTCTGCTTCGTCTTTTACATAAGTGTCGATTAAC 352 Query 19249 AAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTA-AAAACATCT 19307 || ||| |||| ||||||||||| || || || || || || ||| || | Sbjct 351 AAGGAATACGTTTCGCTGTGAATATTTTCCATCATGATTTGGAAACCATAGAAAGAATTT 292 Query 19308 TGCTTCTG-TTATCTGTACTTCA-CTACAAAATCTTTCGACCAAATTTTCATTAACTATT 19365 ||||| | ||| || |||||| |||||| | |||| | | ||||||||| || ||| Sbjct 291 CGCTTCAGCATAT-TGCACTTCATTTACAAAGT-TTTCAGCAAGATTTTCATTTACAATT 234 Query 19366 CCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTT 19425 || || ||| || ||||||||||| | ||||| ||||| | || ||| ||| | Sbjct 233 CCGTCTGAAGCGGCGAAAAATGCTAAAATGTGTTTGATAAAGTATTGTTCGTCTTTATTC 174 Query 19426 AA--TG-TATTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAA 19482 || || ||||||| || || | ||||| || ||||| | |||||| | ||||| ||| Sbjct 173 AACTTGTTATTCCAGTCGTTTAAATCTTGTGACAAATCAATTTCTTCGGCAGTCCAGAAA 114 Query 19483 GAAGCCTCTGCTTTTTTATACATGTTCCATATATCACGATATTGTATAGGAAATATAACA 19542 | ||| |||||| | | ||| ||||| | | | || ||||| || ||| Sbjct 113 CTCG-CTCCATGGATTTATAAAATTCCCAAATATCTTGGTGCTTGATCGGAAAAATGACA 55 Query 19543 AATCTA-TTTTTATTTTCTTTAAGAATAGGTTC 19574 || | | ||||||||||||| | ||| || || Sbjct 54 AAACGATTTTTTATTTTCTTGTAAAATTGGCTC 22 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 558416433767280