Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq496362 205 1e-47
>seq496362
Length=882
Score = 205 bits (226), Expect = 1e-47
Identities = 544/813 (67%), Gaps = 25/813 (3%)
Strand=Plus/Minus
Query 18775 CCTAATTCTAATAGTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAA 18834
|||| ||||| || |||||||| | |||||| | | |||| |||| | || |
Sbjct 822 CCTAGTTCTACTAAAAGTCTATCGGTTACAAACTCTAAATATTGCGTCATTAAATTCGCA 763
Query 18835 TTCATTCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACT 18894
||||| || ||||| | ||||| |||| ||||||| ||||||| ||| || ||||
Sbjct 762 TTCATACCAATTAAACTTACAGGAAGTGATTCTGTAATAAATTCTCTTTCGATGTTTAAG 703
Query 18895 GCCTCTGATATAATAGATACAACTCTATCTTCATTAGGAGGGTATAGAA-----GATGTT 18949
|| || ||||| | | | ||| |||| || | | ||| | ||||||
Sbjct 702 GCGTCAATAATAATGGTTCTGATTCTGTCTT--TTGGCACTTTATTTACCAAGTGATGTT 645
Query 18950 TAAACATCAAACA-TGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTA 19008
|| | || ||| |||||||| || | || ||||| | | |||||||| ||
Sbjct 644 GGTGCAA-ATGCACTGCGAAATCACAGTGAACACCTTCGTCACGAGAAATCAATTCGTTT 586
Query 19009 GAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGAT 19068
|| ||||| || || ||||||| |||| |||||| |||||||| || ||| ||| |
Sbjct 585 GAGAATGTCAATCCTGGCATCAAACCTCGTTTTTTCAACCAGAAAATGGAACAAAAAGCA 526
Query 19069 CCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCA 19128
|| || ||||| || ||||| |||||||||||||||| | || ||| | | || |
Sbjct 525 CCTGAGAAGAAAATTCCTTCCACTGCTGCAAAAGCAATCAATCGCTCTGCGAA---AGAA 469
Query 19129 TCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTC 19188
|| | | || |||||||| | |||||| || || |||||||| | | || |
Sbjct 468 TC-TGA--ATCAATCCATTGAATTGCCCAGTCCGCTTTCTTTTTGATAGCAGGAAAAACT 412
Query 19189 TCTATAGAATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAAT 19248
|||| | || |||| || ||| || ||||| ||||| | || || ||
Sbjct 411 TCTAATGCGTTGAATAAATCGGCTTTCTCTGCTTCGTCTTTTACATAAGTGTCGATTAAC 352
Query 19249 AAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTA-AAAACATCT 19307
|| ||| |||| ||||||||||| || || || || || || ||| || |
Sbjct 351 AAGGAATACGTTTCGCTGTGAATATTTTCCATCATGATTTGGAAACCATAGAAAGAATTT 292
Query 19308 TGCTTCTG-TTATCTGTACTTCA-CTACAAAATCTTTCGACCAAATTTTCATTAACTATT 19365
||||| | ||| || |||||| |||||| | |||| | | ||||||||| || |||
Sbjct 291 CGCTTCAGCATAT-TGCACTTCATTTACAAAGT-TTTCAGCAAGATTTTCATTTACAATT 234
Query 19366 CCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTT 19425
|| || ||| || ||||||||||| | ||||| ||||| | || ||| ||| |
Sbjct 233 CCGTCTGAAGCGGCGAAAAATGCTAAAATGTGTTTGATAAAGTATTGTTCGTCTTTATTC 174
Query 19426 AA--TG-TATTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAA 19482
|| || ||||||| || || | ||||| || ||||| | |||||| | ||||| |||
Sbjct 173 AACTTGTTATTCCAGTCGTTTAAATCTTGTGACAAATCAATTTCTTCGGCAGTCCAGAAA 114
Query 19483 GAAGCCTCTGCTTTTTTATACATGTTCCATATATCACGATATTGTATAGGAAATATAACA 19542
| ||| |||||| | | ||| ||||| | | | || ||||| || |||
Sbjct 113 CTCG-CTCCATGGATTTATAAAATTCCCAAATATCTTGGTGCTTGATCGGAAAAATGACA 55
Query 19543 AATCTA-TTTTTATTTTCTTTAAGAATAGGTTC 19574
|| | | ||||||||||||| | ||| || ||
Sbjct 54 AAACGATTTTTTATTTTCTTGTAAAATTGGCTC 22
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 558416433767280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |