Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_017940.1
Length=127732
Score E
Sequences producing significant alignments: (Bits) Value
seq150714 158 1e-33
seq274812 100 2e-16
>seq150714
Length=4870
Score = 158 bits (174), Expect = 1e-33
Identities = 140/175 (80%), Gaps = 0/175 (0%)
Strand=Plus/Minus
Query 30143 CTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTC 30202
|||| ||||| || ||| ||||| ||||| |||||||||||||| |||||||| ||||
Sbjct 1727 CTGCGTTCATGGTCGAGTATTCTGCACCGAAGTGCCTCCACTGGAATCCGTACACGGGTC 1668
Query 30203 CCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGT 30262
||||||| |||||||| |||| | ||| || || |||| || | || || ||||
Sbjct 1667 CCAGGTCGCCCTCTTCTCTGTCCGTGAACCCGAGGTTATCCAGGAACTGTCGAGACCCGT 1608
Query 30263 TGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30317
|||| ||||||||||| ||||| ||||| |||||||| |||| |||||| |||||
Sbjct 1607 TGGCTTCCCAGATCTTCACCCCTTTCTCCGAGAGCTCCTTGGCGTTTGTTGACCC 1553
Score = 158 bits (174), Expect = 1e-33
Identities = 141/177 (80%), Gaps = 0/177 (0%)
Strand=Plus/Minus
Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928
|| || |||| ||| || |||||||| ||||| || | |||||||||||| || || ||
Sbjct 2319 AGTCCTGTGATGTGGGCGATCATGTAGGTGAGAAGTGCGTAGCTGGCGATATTGAAAGGC 2260
Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988
|| || || ||||| |||||||| | |||||| ||||||||||| ||||| || |||| |
Sbjct 2259 ACGCCCAGACCCATATCCCCCGAGCGCTGGTACAGCTGACACGACAGCTCGCCATCGCAC 2200
Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTG 30045
||||| ||||| || | || |||||| || || |||||||||||| || |||| ||
Sbjct 2199 ACGTAGAACTGGCAGAGGGCGTGGCAGGGGGGCAGAGCCATGAGGGGCAGGTCTGTG 2143
Score = 82.4 bits (90), Expect = 6e-11
Identities = 71/88 (81%), Gaps = 0/88 (0%)
Strand=Plus/Minus
Query 30041 CTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGT 30100
||||||||||||| || |||| ||||||||| ||||||||||| || ||| |||| ||
Sbjct 2017 CTTTGGGGTTCCATGCACACATGATGATGCGTCTGTCTTCTGGATTCTTCTGGATGGTGT 1958
Query 30101 CCACGGCGTTTTGCAGCTGATCCACCCC 30128
| | | |||| |||||||| || || ||
Sbjct 1957 CGATGACGTTCTGCAGCTGGTCGACACC 1930
>seq274812
Length=490
Score = 100 bits (110), Expect = 2e-16
Identities = 84/103 (82%), Gaps = 0/103 (0%)
Strand=Plus/Plus
Query 112107 CTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGA 112166
|| |||||||||||| | ||| ||||||| |||| ||||| ||||| || ||||||||
Sbjct 135 CTGCCTGCTGAGGACGATGTTGATCCTGTTGTTCAGGGGTCTGTTCTTCTCCGGGATGGA 194
Query 112167 GAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209
||||| ||||| || ||||| |||||||| ||||| || |||
Sbjct 195 AAACCACGTCTTCCTGCCCATGATCACCACATTCTGTTTACCT 237
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 406000585851446
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |