Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq150714 158 1e-33 seq274812 100 2e-16 >seq150714 Length=4870 Score = 158 bits (174), Expect = 1e-33 Identities = 140/175 (80%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 30143 CTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTC 30202 |||| ||||| || ||| ||||| ||||| |||||||||||||| |||||||| |||| Sbjct 1727 CTGCGTTCATGGTCGAGTATTCTGCACCGAAGTGCCTCCACTGGAATCCGTACACGGGTC 1668 Query 30203 CCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGT 30262 ||||||| |||||||| |||| | ||| || || |||| || | || || |||| Sbjct 1667 CCAGGTCGCCCTCTTCTCTGTCCGTGAACCCGAGGTTATCCAGGAACTGTCGAGACCCGT 1608 Query 30263 TGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30317 |||| ||||||||||| ||||| ||||| |||||||| |||| |||||| ||||| Sbjct 1607 TGGCTTCCCAGATCTTCACCCCTTTCTCCGAGAGCTCCTTGGCGTTTGTTGACCC 1553 Score = 158 bits (174), Expect = 1e-33 Identities = 141/177 (80%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928 || || |||| ||| || |||||||| ||||| || | |||||||||||| || || || Sbjct 2319 AGTCCTGTGATGTGGGCGATCATGTAGGTGAGAAGTGCGTAGCTGGCGATATTGAAAGGC 2260 Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988 || || || ||||| |||||||| | |||||| ||||||||||| ||||| || |||| | Sbjct 2259 ACGCCCAGACCCATATCCCCCGAGCGCTGGTACAGCTGACACGACAGCTCGCCATCGCAC 2200 Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTG 30045 ||||| ||||| || | || |||||| || || |||||||||||| || |||| || Sbjct 2199 ACGTAGAACTGGCAGAGGGCGTGGCAGGGGGGCAGAGCCATGAGGGGCAGGTCTGTG 2143 Score = 82.4 bits (90), Expect = 6e-11 Identities = 71/88 (81%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 30041 CTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGT 30100 ||||||||||||| || |||| ||||||||| ||||||||||| || ||| |||| || Sbjct 2017 CTTTGGGGTTCCATGCACACATGATGATGCGTCTGTCTTCTGGATTCTTCTGGATGGTGT 1958 Query 30101 CCACGGCGTTTTGCAGCTGATCCACCCC 30128 | | | |||| |||||||| || || || Sbjct 1957 CGATGACGTTCTGCAGCTGGTCGACACC 1930 >seq274812 Length=490 Score = 100 bits (110), Expect = 2e-16 Identities = 84/103 (82%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 112107 CTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGA 112166 || |||||||||||| | ||| ||||||| |||| ||||| ||||| || |||||||| Sbjct 135 CTGCCTGCTGAGGACGATGTTGATCCTGTTGTTCAGGGGTCTGTTCTTCTCCGGGATGGA 194 Query 112167 GAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209 ||||| ||||| || ||||| |||||||| ||||| || ||| Sbjct 195 AAACCACGTCTTCCTGCCCATGATCACCACATTCTGTTTACCT 237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406000585851446