Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_017969.1 Length=108853 Score E Sequences producing significant alignments: (Bits) Value seq426744 217 1e-51 seq507483 170 1e-37 seq450559 109 4e-19 seq506238 102 6e-17 seq351952 100 2e-16 seq155978 100 2e-16 seq484804 93.3 3e-14 seq521735 87.8 1e-12 >seq426744 Length=341 Score = 217 bits (240), Expect = 1e-51 Identities = 242/314 (77%), Gaps = 8/314 (3%) Strand=Plus/Plus Query 99235 ATTAAGATGCAGCGTAAGCACCAGATACAACGCCATTACTA--AAGTA-ACGTTGCAGGT 99291 |||| | ||| ||||| | ||||| || | || |||| || | |||||| |||| Sbjct 29 ATTACGCTGCTGCGTATGTACCAGTAACGATACCTTTACCTGCAATCATACGTTGTAGGT 88 Query 99292 TAACACGCTGAGTAACGTAGTACGCATCACGCTGTTTACCAGCTTGACGCTCACGTTCAA 99351 ||| ||| ||||| |||||||| |||||||| || ||||||||||||||||||||||| | Sbjct 89 TAAGACGTTGAGTTACGTAGTATGCATCACGTTGCTTACCAGCTTGACGCTCACGTTCTA 148 Query 99352 CAGTAACAGCACGCTGACGAGGCATTACAAAGTTATCTTTGTAAACAATAACTGCGAACT 99411 | |||| || ||| |||||||| | || ||||| || |||||| ||| ||| | Sbjct 149 CTGTAATAGTACGTTGACGAGGAACAACGAAGTTCTCACGGTAAACGATAGTACAGAATT 208 Query 99412 CTTTATCTG-CTGCTTTAGCTGGGAAATACTCAGAAACTACAACCGGAAGACCGTAAATA 99470 | | | ||| | |||||||||||||| || | |||||||| ||| | |||||||| ||| Sbjct 209 C-TGAACTGACAGCTTTAGCTGGGAAGTAGTTAGAAACTAGAACTGCTAGACCGTAGATA 267 Query 99471 CGACCAACCTGACCTTGCAG-TTTAAC-AG-CATCATTACCAACCTGTGCAACATCCTGC 99527 |||||||| || ||||| || |||||| || ||| |||||| || |||||||||| Sbjct 268 CGACCAACTTGTCCTTGAAGTTTTAACGAGTTATCCGCACCAACTTGGTTAACATCCTGC 327 Query 99528 CATTCTTCATCTTC 99541 |||||||||||||| Sbjct 328 CATTCTTCATCTTC 341 >seq507483 Length=1083 Score = 170 bits (188), Expect = 1e-37 Identities = 564/862 (65%), Gaps = 39/862 (5%) Strand=Plus/Plus Query 70479 TAAATTGACGGATACTGGAGCAGATTCTACGGATGCAGAAGCTCTGAACGAACTGGCTAC 70538 |||||| || | |||||| ||| ||||| |||||||||| || | |||| | Sbjct 227 TAAATTTACAGGTACTGGTGCAATCTCTACTGATGCAGAAGTACTAGAAAAACTAGG--- 283 Query 70539 GCAGCATCCAATT-GCTA----AGACTCTACTAGAGATTCGTAAGCTGACTAAGCTGATC 70593 || | || || |||| || ||||| |||||||| ||| || || | | Sbjct 284 --AGAAACCCATGAGCTACCCAAGTTACTACTGGAGATTCGCAAGGCAACAAAAGTACTT 341 Query 70594 TCTACTTATGTTGAGAAGATTCTTCTGAGTATTGATGCAGATGGTTGCATT--CGTACTG 70651 ||||||||| ||||| | | ||||| ||||||| |||| ||||| | Sbjct 342 AATACTTATGTAATTAAGATGTTAGACAACATTGACCGAGATGGT--CATTTACGTACAG 399 Query 70652 GTTTCCACGAACATATGACTACTTCTGGTCGTCTGAGTTCTTCTGGTAAACTGAACTTGC 70711 | || | |||| | ||| ||||| |||||||| ||||| || || ||||| ||||| | Sbjct 400 GGTTTAGCCAACACACGACCACTTCGGGTCGTCTAAGTTCATCAGGCAAACTTAACTTAC 459 Query 70712 AACAGCTACCTCGTGATGAATCTATTATCAAGGGTTGTGTAGTAGCTCCTCCTGGGTATC 70771 | || || ||||||||||| |||| | ||||| ||| | ||||||||| | || ||| Sbjct 460 AGCAACTTCCTCGTGATGATGCTATGGTTAAGGGATGTATTGTAGCTCCTGCGGGCTATA 519 Query 70772 GTGTAATCGCATGGGACTTAACAACTGCGGAAGTTTATTATGCTGCTGTTCTATCTGGTG 70831 | ||| | || ||| | |||||||||| | | || || | || ||| | Sbjct 520 GAGTAGTAGCCGTGGATATGGAAACTGCGGAAATGTGGGTAGCAGCAGCACTTAGTGGGG 579 Query 70832 ATAGAA-ATATGCA-ACAGGTATTTATCAACATGAGAAATGAACCTGATAAATACCCGGA 70889 ||| || | | || | || |||| | | ||| | | || | || | || Sbjct 580 ATAAAAGACCTACAGAAAGTGTTTTAACGATATGGCTGACAAGTCTATTGTATCTGCCGA 639 Query 70890 CTTCCA---CTCTAACATCGCACACATGGTATTTAAGCTCCAATGCGAACCCCGTGATGT 70946 |||||| |||| || ||||||||||| || |||| | || | | | ||| Sbjct 640 CTTCCACAGCTCT---ATTGCACACATGGTGTTCAAGCCAAACTGTCTAGCGCATGA--A 694 Query 70947 TAAAAAGC--TGTTCCCAGCTTTGCGTCAAGCAGCTAAAGCAATCACCTTTGGTATTCTG 71004 | |||||| ||||||| || || ||||| || ||||||| || | || |||||||| Sbjct 695 TTAAAAGCTATGTTCCCTGCATTACGTCAGGCTTCTAAAGCTATTTCATTCGGTATTCTA 754 Query 71005 TATGGTTCTGGCCCAGCTAAAGTAGCTCATTCTGTTAACGAAGCTCTTCTGGAACAGGCT 71064 | ||| ||| |||||||| ||||| | ||| |||| || | || | || || | Sbjct 755 TTCGGTAGTGGACCAGCTAAGGTAGCAGAATCTATTAATGAGTCGCTATTTGAGCAACAT 814 Query 71065 GCTAAGACAGGAGAACCGTTTGTTGAATGTACTGTTGCGGA---TGCGAAGGACTATATT 71121 | ||||| || || | ||| || || | || || || || || ||| Sbjct 815 GTAAAGACGGGTTGCCC---TTACGAACCTATTGATAAAGAAACAGCTAAAGATTACATT 871 Query 71122 GAAACTTACTTCGGTCAGTTCCCGCAGCTTAAGCGTTGGATTGATAAGTGCCACGATCAG 71181 || |||||| ||| ||||| | || || ||||||||||| || ||| || ||| Sbjct 872 GATGTTTACTTTAGTCGTTTCCCTGACCTGAAACGTTGGATTGACGCGTCCCATGAGCAG 931 Query 71182 ATCAAGAATCATGGATTTATCTATAGTCACTTTGGTCGTAAACGTCGTCTGCATAATATC 71241 || | ||||| ||||| ||||| ||||| || ||||||||| | || | ||||||| Sbjct 932 ATTCTACAGCATGGGTTTATTTATAGCCACTTCGGACGTAAACGTAGACTACGTAATATC 991 Query 71242 CATTC--CGAAGACCGTG-GTGTTCAGGGTGAAGAAATT-CGTTCTGGATTTAACGCAAT 71297 | || || | | | |||| |||||||| || ||||| || || ||||| || Sbjct 992 CGCTCAGCGTCTAGAGAGACTGTT---GGTGAAGAGCTTACGTTCAGGCTTCAACGCTAT 1048 Query 71298 CATTCAGTCTGCTTCTTCTGAT 71319 |||||| || || |||||| Sbjct 1049 CATTCAAGGGGCATCATCTGAT 1070 >seq450559 Length=633 Score = 109 bits (120), Expect = 4e-19 Identities = 189/271 (70%), Gaps = 8/271 (3%) Strand=Plus/Plus Query 52909 ACTGAAAAAGAA-GTCTATGACGCTTGTCAGGGTTTAGAATATGAAATCAATACCATGTT 52967 || |||||||| ||| ||||||| | ||| | ||||||||| | |||||| || Sbjct 296 ACCGAAAAAGAGTGTC-ATGACGCATTCCAGTCACTTGAATATGAAGTGAATACCTTGCA 354 Query 52968 CAACTCTAATGGTCAGAGTCCATTTATTACCTTTGGTTTTGGTCTAGGAACTTCCTGGGA 53027 | | ||||||| || | || ||| ||||||||||||||||| |||| || ||||| Sbjct 355 TACCGCTAATGGCCAAACACCGTTTGTTACCTTTGGTTTTGGTTTAGGCGTGTCGTGGGA 414 Query 53028 AGCACGTCTAGTACAGAAAGCAGTACTGAAAGTACGCATGGATGGTTTAGGTATCAAT-- 53085 | ||| || | ||| || | | | | |||||| |||| |||||||||| ||| Sbjct 415 GTCGCGTTTAATTCAGCAATCGATGTTAACAGTACGTATGGCGGGTTTAGGTAAAAATCG 474 Query 53086 -AAACGTACAGCTATCTTCCCGAAACTGGTATTTGTACTTCGCGATGGCGTAAATATGAA 53144 ||| ||||| |||| || ||| |||| |||| || |||||||| ||| || Sbjct 475 CAAA---ACAGCAGTCTTTCCAAAATTGGTGTTTGCCATTAAAGATGGCGTGAATCATAA 531 Query 53145 ACCAGGAGATGTTAATTATGACATCAAGAAG 53175 | | |||| ||||||||| || || ||| Sbjct 532 AGCGACTGATGCTAATTATGATATTAAAAAG 562 >seq506238 Length=275 Score = 102 bits (112), Expect = 6e-17 Identities = 127/172 (74%), Gaps = 4/172 (2%) Strand=Plus/Plus Query 27067 GTAAATGTACGACTAATAACGTCGTTCTGTTGTTCACGAGTCAGTGCATTAAATCGAACA 27126 ||||||||||| | | ||||| | ||||||||| | || | || ||||| || || Sbjct 52 GTAAATGTACGTGTTAATACGTCTTGCTGTTGTTCTGGTGTTAATGAGTTAAAACGCACT 111 Query 27127 GCGTAGCCAGAGACACGGATGGTCAACTGAGGATATTTTTCAGGATGTTTCTGCGCATC- 27185 ||||| || || ||||| || || || || |||||||||||||| ||||| ||||| Sbjct 112 GCGTAACCTGATACACGAATAGTTAATTGTGGATATTTTTCAGGGTGTTTAACAGCATCT 171 Query 27186 -CAAAAGCTGGTCACGGCTTAATACATTAACATTTAGGTGCTGACCACCTTC 27236 | || | | ||||| | ||| ||||| || |||| || ||||||||||| Sbjct 172 TCCAATGTT--TCACGACGTAACACATTCACGTTTAAATGTTGACCACCTTC 221 >seq351952 Length=416 Score = 100 bits (110), Expect = 2e-16 Identities = 126/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 27067 GTAAATGTACGACTAATAACGTCGTTCTGTTGTTCACGAGTCAGTGCATTAAATCGAACA 27126 ||||| ||||| | || || || | || |||||| ||| | | |||||||| || Sbjct 34 GTAAAGGTACGTGTGATTACATCTTGCTTTTGTTCTGCAGTTAACGAGTTAAATCGTACT 93 Query 27127 GCGTAGCCAGAGACACGGATGGTCAACTGAGGATATTTTTCAGGATGTTTCTGCGCATCC 27186 ||||| || || ||||| || || || || ||||| || || |||| || | |||||| Sbjct 94 GCGTAACCCGATACACGAATTGTTAATTGTGGATACTTATCTGGATTTTCCATTGCATCC 153 Query 27187 AAAAGCTGGTCACGGCTTAATACATTAACATTTAGGTGCTGACCACCTTCGAT 27239 || | | |||||| | | ||||||||| |||| ||| ||||||||||| || Sbjct 154 AATAACATTTCACGGTTCATTACATTAACGTTTAAGTGTTGACCACCTTCAAT 206 >seq155978 Length=1540 Score = 100 bits (110), Expect = 2e-16 Identities = 201/298 (67%), Gaps = 0/298 (0%) Strand=Plus/Minus Query 45191 TGAGTGTGCATACATGGACGTAAGCAACCTTTCGAGAACTCTCCAGGATTCCAGAAGGTT 45250 || |||||||| || || ||||| || || | || || || || || | || | Sbjct 1448 TGCGTGTGCATGCACGGGCGTAAACAGCCAAGCTCAAATTCGCCTGGGTTGTAAAAACTA 1389 Query 45251 AGAATTTCCCCACGATCATCAATGCCCTTCTTCAGGTTATGATAAATCTTGGCTAGTTGG 45310 | ||||| || ||||| || || || || || | ||||| | | || ||||||||| Sbjct 1388 ATTATTTCACCGCGATCGTCTATACCATTTTTTAAGTTATTAATTACTTTTGCTAGTTGG 1329 Query 45311 TCAAACATAAGACCATCGGAATTAGTCCACTGACGTCCTTGAACACCATAGACTCGTCCC 45370 || | | | ||||| | ||| ||| ||||| || ||||| || || ||| Sbjct 1328 TCTAGCGTTGAGCCATCTGGGCGCTGCCAAGCACGCCCTTGTACGCCATAAACACGGCCC 1269 Query 45371 ATATCATCCTCACCTTTGCGATATGGATTGTCTAGCCAAGCTAAGTTTTCATTTGCATTA 45430 || || ||||||||||| || | ||||| | |||||||| ||||| ||||| || Sbjct 1268 ATGTCGTCCTCACCTTTACGGTGCGGATTATTAAGCCAAGCGCTATTTTCGTTTGCGTTT 1209 Query 45431 GCATTCCATGTGTTAACACCAATAGCGCGGAATTGTGCTGCTGAATCATACCCACGCA 45488 |||| ||| || ||| || || |||| || ||||| || ||| || ||||||| Sbjct 1208 GCATCCCAGGTTTTACAGCCTATTTCGCGAAACTGTGCCGCGCTATCGTAGCCACGCA 1151 >seq484804 Length=980 Score = 93.3 bits (102), Expect = 3e-14 Identities = 196/287 (68%), Gaps = 9/287 (3%) Strand=Plus/Plus Query 45263 CGATCATCAATGCCCTTC---TTCAGGTTATGATAAATCTTGGCTAGTTGGTCAAACATA 45319 ||||||||||| || || |||| ||||| | ||| || || ||||||| || Sbjct 16 CGATCATCAATACCTTTTGGATTCAAGTTATCAACAATTTTTTTCAGCTGGTCAATGCTA 75 Query 45320 AGACCATCGGAATTAGTCCACTGACGTCCTTGAACACCATAGACTCGTCCCATATCATCC 45379 |||||| | |||| ||| ||| ||||||| || || || || ||||||||||| Sbjct 76 CCACCATCAGGCTTAGCCCATGCACGGCCTTGAATCCCGTAAACGCGCCCCATATCATCT 135 Query 45380 TCACCTTTGCGAT--ATGGATTGTCTAGCCAAGCTAAGTTTTCATTTGCATTAGCATTCC 45437 ||||||||||| | ||| || | |||||||| ||| ||| |||||||||| || Sbjct 136 TCACCTTTGCGGTGAATG--TTATTAAGCCAAGCATCATTTAAATTGGCATTAGCATCCC 193 Query 45438 ATGTGTTAACACCAATAGCGCGGAATTGTGCTGCTGAATCATACCCACGCAGATACCCAA 45497 | || ||| ||| | || || | || || ||||| ||||| | ||| |||| Sbjct 194 AGGTTTTAGTACCTAGTTTACGAAAATCAGCGGCATTGTCATAACCACGGATATAACCAA 253 Query 45498 TCATTTCCATTATTGCTTGTTTTGCAAACGC-CTTACGAGTAGTAAT 45543 | | || || || || ||| ||| || |||||| ||||| || Sbjct 254 TAAACTCAGCAATCGC-TGACTTGAAAAAGCTCTTACGCGTAGTTAT 299 >seq521735 Length=281 Score = 87.8 bits (96), Expect = 1e-12 Identities = 113/155 (73%), Gaps = 1/155 (1%) Strand=Plus/Plus Query 45349 TTGAACACCATAGACTCGTCCCATATCATCCTCACCTTTGCGATATGGATTGTCTAGCCA 45408 ||| || || || || || ||||| ||||| | |||||||| | ||||| | ||| Sbjct 34 TTGCACGCCGTACACCCGACCCATGTCATCAACGCCTTTGCGGTGAGGATTACTAAACCA 93 Query 45409 AGCTAAGTTTTCATTTGCATTAGCATTCCATGTGTTAACACCAATAGCGCGGAATTGTGC 45468 || | |||||| || || ||||||||||| || || |||||||| || || ||||| Sbjct 94 AGATTCGTTTTCGTTCGCGTTAGCATTCCACGTATTGCACCCAATAGCACGAAACTGTGC 153 Query 45469 TGCTGAATCATACCCACGCAGAT-ACCCAATCATT 45502 || ||| || |||||||||| ||| ||| ||| Sbjct 154 CGCACTATCGTAACCACGCAGATAACCTAATAATT 188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 345974702989508