Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_017972.1 Length=280538 Score E Sequences producing significant alignments: (Bits) Value seq458775 87.8 3e-12 seq516804 84.2 4e-11 >seq458775 Length=389 Score = 87.8 bits (96), Expect = 3e-12 Identities = 99/131 (76%), Gaps = 4/131 (3%) Strand=Plus/Plus Query 170722 CGACCGGGCAGCGTTTTGCAGCCCAGCGATTCCCACGTTTTACGACCGAGGATAATCGGC 170781 ||||| |||| || || ||||| ||| ||||| ||||||||||| | ||| |||||| Sbjct 117 CGACCCGGCAACGG---GCGGCCCAACGAATCCCAGGTTTTACGACCCATGATGATCGGC 173 Query 170782 TTGCCGTAAGTTGCAGCCTTGAAATGCTTCAACTCTTCTGGAAAGTGCCACGGCATAGTA 170841 ||||| | || | |||||||||| || || || | || || ||||||||||| | Sbjct 174 TTGCCCAAGGTGGTGGCCTTGAAATATTTGAAATCCGCAGGCAAATGCCACGGCATGCTG 233 Query 170842 TTGTCG-CGCC 170851 |||||| |||| Sbjct 234 TTGTCGACGCC 244 >seq516804 Length=734 Score = 84.2 bits (92), Expect = 4e-11 Identities = 126/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 23044 GTGGTATTGGAAAACTCCAGAGTAAGCGAGCCTTTCCATTCTGGTTCCAGCGGCGTGACG 23103 |||||||| |||||| | ||| | |||| ||| || || || |||||||||||| Sbjct 20 GTGGTATTACTAAACTCTAAAGTCACATGCCCTTCCCACTCAGGCTCAAGCGGCGTGACG 79 Query 23104 TTTACGATGATGCCGCAACGCGCATACGTCGATTTGCCGAGGCAGATAACTAATACGTCA 23163 || ||||| || ||||| || ||||| || ||||| || || || || ||||| || Sbjct 80 TTGACGATAATACCGCAGCGGGCATAGGTTGATTTACCAAGACAAATCGTCAATACATCG 139 Query 23164 CGCGGAATGTTGAAGTGTTCCGGCGTGTTTGCCAGTGCGAAACTGTTCGGCGGAATGAT 23222 || ||||| ||| | |||| ||| ||| || || || ||| || ||||| || Sbjct 140 CGTGGAATACGGAAATATTCCATGGTGCGTGCTAGCGCAAACGAGTTTGGTGGAATAAT 198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 891697509600160