Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_017981.1 Length=49981 Score E Sequences producing significant alignments: (Bits) Value seq523693 127 7e-25 seq311730 98.7 3e-16 >seq523693 Length=695 Score = 127 bits (140), Expect = 7e-25 Identities = 225/327 (69%), Gaps = 6/327 (2%) Strand=Plus/Minus Query 25950 CATCTGCATGGTTCCGCCAACGTTGACCACAATTTCAGTGGTGTAGCGCTCAACGCCG-- 26007 |||||||||| | || | | ||| ||||||||||| ||||| || |||| Sbjct 397 CATCTGCATGCTGCCACTCTGATCGACGACAATTTCAGTTGTGTACTTGTCTTGGCCGCT 338 Query 26008 -TCCTTTTCCCACTTGCGGGTTTTCAGTTGCCCCTCAATGTAAACCTGTGAACCTTTCTT 26066 | | || |||||| || || | || || || |||| |||||| || |||||||| Sbjct 337 TTGGTCTTTCCACTTACGTGTCTGCAATTTACCTTCAAGGTAAACTTGCGAACCTTTACG 278 Query 26067 CAGGTACTCGCCCGCGATCTCCGCTACCTTGCCAAACAGCACGACGCGATGCCATTCTGT 26126 ||||||||| ||| ||| || |||| |||||| |||| ||| ||||| ||||| || || Sbjct 277 CAGGTACTCAGCCGTGATTTCAGCTAACTTGCCGAACATCACCACGCGGTGCCACTCGGT 218 Query 26127 CACTTCTTTCTTTTCGCCGGTCTGCTTATCGTTCCAGCTTTCTGAGGTCGCTACGGTAAT 26186 ||||| | || || ||| | || ||||| ||| ||| || | |||||| Sbjct 217 ACGTTCTTGTTGTTGACC---CTGTTGGTCTTTCCAAGATTCGCTGGTAGCAAGGGTAAT 161 Query 26187 GTTGGCGACTGCGCCGCCATTAGGCATGTAACGGATCTCTGGATCGTTCCCCAGGTTACC 26246 ||||| || || |||||| ||||| ||||| | || ||||| | || | || || Sbjct 160 ATTGGCCACGGCATTGCCATTTGGCATATAACGCACTTCGGGATCTTGGCCTAAATTGCC 101 Query 26247 GACAAGGATTACTTTATTTACGCCGCG 26273 ||| | || ||||| || || || || Sbjct 100 GACTAATATGACTTTGTTAACACCACG 74 >seq311730 Length=9896 Score = 98.7 bits (108), Expect = 3e-16 Identities = 180/261 (69%), Gaps = 2/261 (1%) Strand=Plus/Plus Query 26016 CCACTTGCGGGTTTTCAGTTGCCCCTCAATGTAAACCTGTGAACCTTT-CTTCAGGTACT 26074 ||| || || |||| |||| || |||| |||| ||||||||||| | || || | Sbjct 2753 CCATTTACGTGTTTGAAGTTTACCTTCAACATAAATTTGTGAACCTTTACGGCA-ATATT 2811 Query 26075 CGCCCGCGATCTCCGCTACCTTGCCAAACAGCACGACGCGATGCCATTCTGTCACTTCTT 26134 | || | || || |||| ||||||||| | || || || ||||| || || || Sbjct 2812 CACCAACAATTTCTGCTAACTTGCCAAAAAATACCACACGGTGCCACTCAGTTTTATCAA 2871 Query 26135 TCTTTTCGCCGGTCTGCTTATCGTTCCAGCTTTCTGAGGTCGCTACGGTAATGTTGGCGA 26194 | ||| ||| || | || || || |||| ||||| || |||| ||| || || || | Sbjct 2872 CCATTTGGCCAGTGTTTTTGTCTTTGTAGCTATCTGAAGTTGCTAAGGTGATATTTGCTA 2931 Query 26195 CTGCGCCGCCATTAGGCATGTAACGGATCTCTGGATCGTTCCCCAGGTTACCGACAAGGA 26254 | || ||| |||||||| ||||| | || ||||| | || | ||||| || | | Sbjct 2932 CACCGTTGCCGTTAGGCATATAACGTACTTCAGGATCTTGTCCTAAATTACCAACCAAAA 2991 Query 26255 TTACTTTATTTACGCCGCGTG 26275 ||||||| || || ||||||| Sbjct 2992 TTACTTTGTTCACACCGCGTG 3012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 158820284437332