Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_017984.1 Length=46387 Score E Sequences producing significant alignments: (Bits) Value seq478798 89.7 2e-13 seq293393 86.0 2e-12 >seq478798 Length=459 Score = 89.7 bits (98), Expect = 2e-13 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 41758 GCTTTAGCTAAAGAGTTTGATTGCCCTGTTTTCTGTTTATCGCAGTTAAGCCGAAAGGTT 41817 || |||||||||||||| |||||| ||| | ||||| ||||||| ||| || Sbjct 293 GCATTAGCTAAAGAGTTACGTTGCCCGGTTATTGCCTTATCTCAGTTAAACCGTGGTCTT 352 Query 41818 GAGGATAGAGCAGATAAGCGCCCAATGATGAGTGATTTGCGTGAATCTGGCCAAATCGAA 41877 ||| | | || ||||||||||| || | || || |||||||| ||| || || Sbjct 353 GAGCAACGTGCTGATAAGCGCCCTATTAACTCAGACTTACGTGAATCAGGCGCGATTGAG 412 Query 41878 CAAGATGCCAATACGATTTTATTTATTTATCGTGATGAGGTTTA 41921 |||||||| || ||| | ||||||||||| ||||| ||||| Sbjct 413 CAAGATGCTGATTTAATTATGTTTATTTATCGAGATGAAGTTTA 456 >seq293393 Length=3342 Score = 86.0 bits (94), Expect = 2e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 41816 TTGAGGATAGAGCAGATAAGCGCCCAATGATGAGTGATTTGCGTGAATCTGGCCAAATCG 41875 ||||| | | || |||||||| ||||| | ||||| ||||| || ||| || | Sbjct 3341 TTGAGCAACGTGCCGATAAGCGTCCAATTAACTCAGATTTACGTGAGTCGGGCTCTATTG 3282 Query 41876 AACAAGATGCCAATACGATTTTATTTATTTATCGTGATGAGGTTTACAACAAACAAAGTA 41935 | ||||||||| || || | ||||||||||||||||| || |||||| || | |||| Sbjct 3281 AGCAAGATGCCGATTTAATCATGTTTATTTATCGTGATGAAGTGTACAACGAAGACAGTA 3222 Query 41936 AAGATATTGGGATTGCTGAAATTAT 41960 |||| || ||||| ||||| || Sbjct 3221 CCGATAAAGGTATTGCCGAAATAAT 3197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147391253296476