Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_018269.1 Length=31766 Score E Sequences producing significant alignments: (Bits) Value seq478798 105 1e-18 seq293393 105 1e-18 seq495785 100 6e-17 >seq478798 Length=459 Score = 105 bits (116), Expect = 1e-18 Identities = 143/196 (73%), Gaps = 9/196 (5%) Strand=Plus/Plus Query 25040 AGAAATTTC-GAAAT--CAC-----TTAAATCCATG-GCGAAAGAATTTAATTGTCCAAT 25090 ||||||||| ||||| ||| ||||| ||| || ||||| || ||| || | Sbjct 262 AGAAATTTCTGAAATTTCACGTTCTTTAAAAGCATTAGCTAAAGAGTTACGTTGCCCGGT 321 Query 25091 GATCGCGTTATCACAGCTTAACCGAGGTCTTGAAAACAGACAGGATAAGCGCCCAATTAA 25150 || || ||||| ||| | ||||| |||||||| | | ||||||||||| ||||| Sbjct 322 TATTGCCTTATCTCAGTTAAACCGTGGTCTTGAGCAACGTGCTGATAAGCGCCCTATTAA 381 Query 25151 CTCAGACTTGCGCGAGTCTGGCGCGATAGAACAGGATGCTGATCTAATCGCATTGATATA 25210 ||||||||| || || || |||||||| || || ||||||||| |||| || || || Sbjct 382 CTCAGACTTACGTGAATCAGGCGCGATTGAGCAAGATGCTGATTTAATTATGTTTATTTA 441 Query 25211 CCGAGACGAAGTGTAT 25226 ||||| ||||| ||| Sbjct 442 TCGAGATGAAGTTTAT 457 >seq293393 Length=3342 Score = 105 bits (116), Expect = 1e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 25134 GATAAGCGCCCAATTAACTCAGACTTGCGCGAGTCTGGCGCGATAGAACAGGATGCTGAT 25193 |||||||| |||||||||||||| || || ||||| ||| | || || || ||||| ||| Sbjct 3327 GATAAGCGTCCAATTAACTCAGATTTACGTGAGTCGGGCTCTATTGAGCAAGATGCCGAT 3268 Query 25194 CTAATCGCATTGATATACCGAGACGAAGTGTATAACCCCGACAGCTCTGACAAAGGCATT 25253 ||||| || || || || || |||||||| ||| ||||| | || ||||| ||| Sbjct 3267 TTAATCATGTTTATTTATCGTGATGAAGTGTACAACGAAGACAGTACCGATAAAGGTATT 3208 Query 25254 GCCGAGATTATCATTGGCAAACA 25276 ||||| || ||||| || || || Sbjct 3207 GCCGAAATAATCATAGGTAAGCA 3185 >seq495785 Length=475 Score = 100 bits (110), Expect = 6e-17 Identities = 137/190 (72%), Gaps = 1/190 (1%) Strand=Plus/Plus Query 25041 GAAATTTCGAAATCACTTAAATCCATGGCGAAAGAATTTAATTGTCCAATGATCGCGTTA 25100 ||||||||| ||| | |||||| | || || ||| |||| ||||| | || || ||| Sbjct 131 GAAATTTCGCGGTCATTGAAATCCCTTGCTAAGGAACTTAAATGTCCTGTTATTGCCTTA 190 Query 25101 TCACAGCTTAACCGAG-GTCTTGAAAACAGACAGGATAAGCGCCCAATTAACTCAGACTT 25159 |||||||||||||| || | || | | |||||||||||| ||||||| || | Sbjct 191 TCACAGCTTAACCGCTCGTTTGGAGCAACGTGCTGATAAGCGCCCAGTTAACTCGGATCT 250 Query 25160 GCGCGAGTCTGGCGCGATAGAACAGGATGCTGATCTAATCGCATTGATATACCGAGACGA 25219 || || || || |||| || |||||||| ||| |||| || || || || || || Sbjct 251 ACGTGAATCAGGTTCGATTGAGCAGGATGCCGATTTAATTATGTTTATTTATCGTGATGA 310 Query 25220 AGTGTATAAC 25229 ||| |||||| Sbjct 311 AGTTTATAAC 320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 100896021156672