Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_018269.1
Length=31766
Score E
Sequences producing significant alignments: (Bits) Value
seq478798 105 1e-18
seq293393 105 1e-18
seq495785 100 6e-17
>seq478798
Length=459
Score = 105 bits (116), Expect = 1e-18
Identities = 143/196 (73%), Gaps = 9/196 (5%)
Strand=Plus/Plus
Query 25040 AGAAATTTC-GAAAT--CAC-----TTAAATCCATG-GCGAAAGAATTTAATTGTCCAAT 25090
||||||||| ||||| ||| ||||| ||| || ||||| || ||| || |
Sbjct 262 AGAAATTTCTGAAATTTCACGTTCTTTAAAAGCATTAGCTAAAGAGTTACGTTGCCCGGT 321
Query 25091 GATCGCGTTATCACAGCTTAACCGAGGTCTTGAAAACAGACAGGATAAGCGCCCAATTAA 25150
|| || ||||| ||| | ||||| |||||||| | | ||||||||||| |||||
Sbjct 322 TATTGCCTTATCTCAGTTAAACCGTGGTCTTGAGCAACGTGCTGATAAGCGCCCTATTAA 381
Query 25151 CTCAGACTTGCGCGAGTCTGGCGCGATAGAACAGGATGCTGATCTAATCGCATTGATATA 25210
||||||||| || || || |||||||| || || ||||||||| |||| || || ||
Sbjct 382 CTCAGACTTACGTGAATCAGGCGCGATTGAGCAAGATGCTGATTTAATTATGTTTATTTA 441
Query 25211 CCGAGACGAAGTGTAT 25226
||||| ||||| |||
Sbjct 442 TCGAGATGAAGTTTAT 457
>seq293393
Length=3342
Score = 105 bits (116), Expect = 1e-18
Identities = 109/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 25134 GATAAGCGCCCAATTAACTCAGACTTGCGCGAGTCTGGCGCGATAGAACAGGATGCTGAT 25193
|||||||| |||||||||||||| || || ||||| ||| | || || || ||||| |||
Sbjct 3327 GATAAGCGTCCAATTAACTCAGATTTACGTGAGTCGGGCTCTATTGAGCAAGATGCCGAT 3268
Query 25194 CTAATCGCATTGATATACCGAGACGAAGTGTATAACCCCGACAGCTCTGACAAAGGCATT 25253
||||| || || || || || |||||||| ||| ||||| | || ||||| |||
Sbjct 3267 TTAATCATGTTTATTTATCGTGATGAAGTGTACAACGAAGACAGTACCGATAAAGGTATT 3208
Query 25254 GCCGAGATTATCATTGGCAAACA 25276
||||| || ||||| || || ||
Sbjct 3207 GCCGAAATAATCATAGGTAAGCA 3185
>seq495785
Length=475
Score = 100 bits (110), Expect = 6e-17
Identities = 137/190 (72%), Gaps = 1/190 (1%)
Strand=Plus/Plus
Query 25041 GAAATTTCGAAATCACTTAAATCCATGGCGAAAGAATTTAATTGTCCAATGATCGCGTTA 25100
||||||||| ||| | |||||| | || || ||| |||| ||||| | || || |||
Sbjct 131 GAAATTTCGCGGTCATTGAAATCCCTTGCTAAGGAACTTAAATGTCCTGTTATTGCCTTA 190
Query 25101 TCACAGCTTAACCGAG-GTCTTGAAAACAGACAGGATAAGCGCCCAATTAACTCAGACTT 25159
|||||||||||||| || | || | | |||||||||||| ||||||| || |
Sbjct 191 TCACAGCTTAACCGCTCGTTTGGAGCAACGTGCTGATAAGCGCCCAGTTAACTCGGATCT 250
Query 25160 GCGCGAGTCTGGCGCGATAGAACAGGATGCTGATCTAATCGCATTGATATACCGAGACGA 25219
|| || || || |||| || |||||||| ||| |||| || || || || || ||
Sbjct 251 ACGTGAATCAGGTTCGATTGAGCAGGATGCCGATTTAATTATGTTTATTTATCGTGATGA 310
Query 25220 AGTGTATAAC 25229
||| ||||||
Sbjct 311 AGTTTATAAC 320
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 100896021156672
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |