Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq6427 87.8 1e-12 seq59939 84.2 2e-11 >seq6427 Length=3314 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || ||||| | ||| | || | ||| ||||| || || || || || ||||| |||| | Sbjct 3108 CCGCCTCTCAGACGGAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 3167 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | | |||| |||| ||||| || ||||| |||| | ||| ||||| || ||| Sbjct 3168 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGA 3227 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 |||||||| || || || || || || ||| |||| | ||||| | || || Sbjct 3228 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTTTCGATGGTGTCGCTGGGCTCAACC 3287 Query 101423 TCAAGAGTGACCGTTTTGCCGGT 101445 || || |||| || ||||| || Sbjct 3288 TCCAGGGTGATGGTCTTGCCCGT 3310 >seq59939 Length=800 Score = 84.2 bits (92), Expect = 2e-11 Identities = 115/161 (71%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 101313 CATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTT 101372 |||| |||| ||||| || ||||| |||| | ||| ||||| || ||||||||||| | Sbjct 9 CATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCT 68 Query 101373 TATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGA 101432 | || || || || || ||| |||| | |||||| | || || || || |||| Sbjct 69 TGTCCTGGATCTTGGCCTTGACATTTTCGATTGTGTCACTAGGCTCAACCTCGAGGGTGA 128 Query 101433 CCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTT 101473 || ||||| || | || || ||||| ||||||||| || Sbjct 129 TGGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCATGTTT 169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 393740412944214