Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_018837.1 Length=122024 Score E Sequences producing significant alignments: (Bits) Value seq426744 150 1e-31 seq466100 145 6e-30 seq507483 136 3e-27 seq511551 111 1e-19 seq508595 96.9 3e-15 seq507581 84.2 2e-11 >seq426744 Length=341 Score = 150 bits (166), Expect = 1e-31 Identities = 219/307 (71%), Gaps = 7/307 (2%) Strand=Plus/Plus Query 101822 GCTGCGTAGGTACCAGAAACAATACCGTT---TTCAAAGTAACGCTGCAGGTTAACACGC 101878 |||||||| ||||||| ||| ||||| || | ||| ||| || ||||||| ||| Sbjct 37 GCTGCGTATGTACCAGTAACGATACCTTTACCTGCAATCATACGTTGTAGGTTAAGACGT 96 Query 101879 TGAGTAACGTAGTATGCATCACGCTGTTCAGAAGCACGACGTTCTTTCTCAACAGTTACC 101938 ||||| ||||||||||||||||| || | | ||| |||| || || || || | Sbjct 97 TGAGTTACGTAGTATGCATCACGTTGCTTACCAGCTTGACGCTCACGTTCTACTGTAATA 156 Query 101939 GCACGCTGACGTGGAACAACGAAGTTTTCACGATAAGCGAT--GAAGCAATAAGGAGCTT 101996 | ||| ||||| |||||||||||||| ||||| ||| |||| | ||| || || Sbjct 157 GTACGTTGACGAGGAACAACGAAGTTCTCACGGTAAACGATAGTACAGAATTCTGAACT- 215 Query 101997 CAGCAGCCTTATCTGGGAAGTACTCAGAAACAACAACCGGCATACCATAAATACGACCAA 102056 |||| ||| |||||||||| | |||||| | ||| | | ||| || |||||||||| Sbjct 216 -GACAGCTTTAGCTGGGAAGTAGTTAGAAACTAGAACTGCTAGACCGTAGATACGACCAA 274 Query 102057 CCTGACCTTGCAGTTTGATAGCATCAGCAGCAGCAACCTGAGATACGTCTTGGAATTCTT 102116 | || ||||| ||||| | | | | | ||| |||| || || || || |||||| Sbjct 275 CTTGTCCTTGAAGTTTTAACGAGTTATCCGCACCAACTTGGTTAACATCCTGCCATTCTT 334 Query 102117 CGTCTTC 102123 | ||||| Sbjct 335 CATCTTC 341 >seq466100 Length=556 Score = 145 bits (160), Expect = 6e-30 Identities = 140/180 (78%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 102560 TCTGGTTCAACCATCATTGTCAGCAACTTGCTGGACATTGGCAGTTCTTCGAACAGAGAA 102619 ||||| |||| |||||| || || | ||| || | |||||| || |||||||| | | Sbjct 6 TCTGGCTCAATCATCATAGTAAGAATCTTACTAGTCATTGGAAGCTCTTCGAATAAGTTA 65 Query 102620 CCAACGATCAGTTCCTTCTGCAGATCACGCAGGATACGCAGGGAGAAAATTGTTTCGTAG 102679 || || | || | |||||||| |||||| |||||||| | |||||||| || |||||| Sbjct 66 CCTACAACCATTAACTTCTGCATATCACGTAGGATACGTTGAGAGAAAATAGTCTCGTAG 125 Query 102680 TTTTCAGTTGAAACTTCGATAGAAGAAGATGCGTTTACAGCTTTAGCGTGAGCTTCACCA 102739 || ||| | |||||||||||| ||| |||||| ||||||||| ||||||||||||| Sbjct 126 TTCTCACTAGAAACTTCGATACTTGAACTTGCGTTCACAGCTTTAAGGTGAGCTTCACCA 185 >seq507483 Length=1083 Score = 136 bits (150), Expect = 3e-27 Identities = 475/723 (66%), Gaps = 29/723 (4%) Strand=Plus/Plus Query 71091 ACTTATGTTAATAAGATGCTGCTTAACATAGACTCAGATGGGTGTATTAGAACAGGTTTC 71150 |||||||| | ||||||| | ||||| ||| |||||| | | | ||||| || Sbjct 345 ACTTATGTAATTAAGATGTTAGACAACATTGACCGAGATGGTCATTTACGTACAGGGTTT 404 Query 71151 CACGAGCATATGACTACTTCTGGTAGACTTAGCTCATCTGGTAAGCTGAACTTACAGCAG 71210 | | || | ||| ||||| ||| | || || ||||| || || || ||||||||||| Sbjct 405 AGCCAACACACGACCACTTCGGGTCGTCTAAGTTCATCAGGCAAACTTAACTTACAGCAA 464 Query 71211 CTTCCTAGAGATGAATCTATTATTAAGGGGTGCATTGTTGCTCCAGAAGGTTACCGAGTA 71270 |||||| | ||||| |||| ||||||| || ||||| ||||| | || || ||||| Sbjct 465 CTTCCTCGTGATGATGCTATGGTTAAGGGATGTATTGTAGCTCCTGCGGGCTATAGAGTA 524 Query 71271 ATTTCTTGGGACTTAACAACTGCGGAAGTATATTATGCTGCCGTATTATCTGGAGAT-AG 71329 | | ||| | |||||||||| | | || || | | | ||| ||| | Sbjct 525 GTAGCCGTGGATATGGAAACTGCGGAAATGTGGGTAGCAGCAGCACTTAGTGGGGATAAA 584 Query 71330 AGAGCTTCAACAAGTCTTTATTAAC-AT---GCAGA-ATGACCCTGAAAACTACTCGGAC 71384 ||| || || |||| || ||||| || || || | | | | | || | ||| Sbjct 585 AGACCTACAGAAAGTGTT--TTAACGATATGGCTGACAAGTCTATTGTATCT--GCCGAC 640 Query 71385 TTCCACGGTAGTATAGCGCACTCAGTATTTGGTCTAACATGT-AAGCCAACTGATGTTAA 71443 |||||| | ||| || ||| || || | || ||| ||| | ||| |||| Sbjct 641 TTCCACAGCTCTATTGCACACATGGTGTTCAAGCCAAACTGTCTAGCGCA-TGA-ATTAA 698 Query 71444 GAAGCTA--TTCCCTGCCTTACGTCAAGCAGCTAAAGCTATCTCCTTTGGTATCCTGTAC 71501 |||||| |||||||| |||||||| || |||||||||| || || ||||| || | | Sbjct 699 -AAGCTATGTTCCCTGCATTACGTCAGGCTTCTAAAGCTATTTCATTCGGTATTCTATTC 757 Query 71502 GGTTCAGGTAAGGCTAAAGTTGCAGCTTCTGTAAACGAAGCTCTACTAGAACAGAGTATT 71561 ||| || ||||| || |||| ||| | || || | ||| | || || | | Sbjct 758 GGTAGTGGACCAGCTAAGGTAGCAGAATCTATTAATGAGTCGCTATTTGAGCAACATGTA 817 Query 71562 AAAACAGGTGAGCCTTATAAAGAGTGTACTCCTGCTGA---TGCTCAAGGGTATATTGAT 71618 || || ||| |||| | || || | | || ||| ||| || |||||| Sbjct 818 AAGACGGGTTGCCCTT---ACGAACCTATTGATAAAGAAACAGCTAAAGATTACATTGAT 874 Query 71619 ACTTACTTTACGAGATTCCCACGCCTTAAGAAGTGGATTGCACAATCTCACGACCAGATT 71678 |||||||| | ||||| ||| || ||||||| || || || |||||| Sbjct 875 GTTTACTTTAGTCGTTTCCCTGACCTGAAACGTTGGATTGACGCGTCCCATGAGCAGATT 934 Query 71679 AAAGATTTTGGGTTTATCTATAGTCACTTTGGTCGTAAACGCAGACTGCACAATATCAAC 71738 | | ||||||||| ||||| ||||| || |||||||| ||||| | |||||| | Sbjct 935 CTACAGCATGGGTTTATTTATAGCCACTTCGGACGTAAACGTAGACTACGTAATATCCGC 994 Query 71739 TCTGAGGATAGAG-GA--GTTCAGGGAGAAGAAATT-CGTTCTGGATTCAATGCTATTAT 71794 || | | ||||| || ||| || ||||| || ||||| || ||||| ||||| || Sbjct 995 TCAGCGTCTAGAGAGACTGTT---GGTGAAGAGCTTACGTTCAGGCTTCAACGCTATCAT 1051 Query 71795 TCA 71797 ||| Sbjct 1052 TCA 1054 >seq511551 Length=634 Score = 111 bits (122), Expect = 1e-19 Identities = 212/310 (68%), Gaps = 2/310 (1%) Strand=Plus/Plus Query 54083 AATGGTCAGACCCCATTTATTACATTCGGATTTGGTCTGGGAGAATCTTGGGAGTCTAGA 54142 ||||| || | ||| ||| ||| | || |||||| | || | ||||||||||| Sbjct 101 AATGGACAAAGCCCCTTTTGTACGGTAGGTTTTGGTTTAGGTACTTGTTGGGAGTCTAAG 160 Query 54143 CTAATCCAAAGATCTATTCTAGAAGTCCGTATGAAAGGTCTAGGAGCAGACAAACGTACA 54202 ||||| || | ||| || || || || ||||| ||||| |||| ||| || | ||| Sbjct 161 CTAATTCAGAAATCCATCCTTGAGGTGCGTATTAAAGGCTTAGGTGCATCAAAGAGGACA 220 Query 54203 GCTATTTTTCCTAAGCTGGTGTTTGCATTGAAACCTGGTCTCAATATGCAAGCAGGA-GA 54261 || | || |||||||| | | | | ||| ||| |||| | || ||||| || Sbjct 221 GCGGTATTCCCTAAGCTTATCCTAACTATTAAAGACGGTGTCAACTTTAAA-CAGGAAGA 279 Query 54262 TCCTAACTACGACATTAAACAGTTAGCTATTAAATGTACTTCTGAGCGTATTTACCCTGA 54321 || ||||| | ||||||||||||||| | | ||| | | ||||||| |||||||| Sbjct 280 CCCAAACTATAATATTAAACAGTTAGCTCTAGAGTGTGCCAGTAAGCGTATGTACCCTGA 339 Query 54322 CTACGTGAGTTATGATAAGGTTGTGGAAGTTACGGGAGACTTTAAGTTCCCTATGGGTTG 54381 | | || |||||| |||| || ||||| || | |||||| ||||| || Sbjct 340 TATTATCAACTACGATAAGATTGTAGAGGTTACTGGTGGTTTTAAGGCAAGCATGGGCTG 399 Query 54382 CAGGAGCTTC 54391 |||||||||| Sbjct 400 CAGGAGCTTC 409 >seq508595 Length=419 Score = 96.9 bits (106), Expect = 3e-15 Identities = 83/100 (83%), Gaps = 2/100 (2%) Strand=Plus/Minus Query 30685 AAACATACAAACTCCTAAATTTGGTGCGGGATGAGGGAGTCGAACCCTCGTCTACTGGGT 30744 ||||||| | ||| || | |||||||| || || || |||||| || |||||||||| Sbjct 374 AAACATAAATCCTC-TATAGCTGGTGCGGAATTAGAGATTCGAACTCTAATCTACTGGGT 316 Query 30745 GGAAGCCAGTTATTCTAGCCACTGAACTAATCACGCATAA 30784 ||||||||||||||||| ||| |||||||||| ||||||| Sbjct 315 GGAAGCCAGTTATTCTA-CCATTGAACTAATCCCGCATAA 277 >seq507581 Length=941 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 102347 TCAATTGCGATTGCATGAGCTTCGATCAGACGACGACGCATGATTGGAAGCAGAGTAAAG 102406 || ||| || | ||||||||||| | || | |||| | ||| |||| |||| || Sbjct 795 TCCATTTCGTTAGCATGAGCTTCAACAAGGTGTTGACGTAAGATAGGAACTAGAGAAAGA 854 Query 102407 ATAGCATCTTCTTCTGTTTCATCAGTCATGTAAGCCTTAGCAGCCAGTTTGAAAGT 102462 |||| |||||| || ||||| || || | ||||| ||||||||| ||||||||||| Sbjct 855 ATAGTATCTTCATCAGTTTCTTCTGTTAAGTAAGACTTAGCAGCTAGTTTGAAAGT 910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 387851968902670