Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_018855.1 Length=169158 Score E Sequences producing significant alignments: (Bits) Value seq449735 197 1e-45 seq509673 131 2e-25 seq506238 131 2e-25 seq511551 93.3 5e-14 seq351952 91.5 2e-13 >seq449735 Length=3187 Score = 197 bits (218), Expect = 1e-45 Identities = 486/734 (66%), Gaps = 5/734 (1%) Strand=Plus/Plus Query 131937 AAGTTTCATTGCCTACTCCAATTATGGCAGGTGCTCGTACTCCAACTCGCCAGTTCT-CT 131995 || ||||| | ||||| |||||||||||||||| |||||| ||||| |||||||| || Sbjct 26 AAATTTCACTACCTACGCCAATTATGGCAGGTGTTCGTACGCCAACACGCCAGTTTAGCT 85 Query 131996 AGTTGTGTAGTTATTGAAGCCGGTGATTCGTTAAAATCTATTAACAAAACTTCAGCATCA 132055 || ||||| | || || || || | | || |||||| || || | || Sbjct 86 CGT-GTGTATTAATAGAGTGTGGCGACAGCCTTGATTCAATTAACGCCACCTCGTCTGCA 144 Query 132056 ATTATTGAATATATTTCTAAACGAGCTGGTATAGGTATCAACGTTGGTATGCTTCGTGCA 132115 ||| || |||| | || |||| || || || || || |||| ||| |||||||| Sbjct 145 ATTGTTAAATACGTATCGCAACGTGCCGGCATTGGCATTAACGCAGGTCGCATTCGTGCA 204 Query 132116 GAAGGTTCTAAGATCGGTATGGGTGAAGTTCGACATACGGGTGTTATTCCATTCTGGAAA 132175 ||| | || | | || |||| ||||||||| |||||| || | || Sbjct 205 CTGGGTAGCCACATTCGCAATGGCGAAGCGTACCATACGGGTTGTATTCCTTTTTATAAG 264 Query 132176 CATTTCCAAACTGCAGTAAAATCTTGTTCTCAAGGTGGTATTCGTGGTGGTGCTGCTACA 132235 || || ||||| || || ||| ||||| ||||| ||| | ||||| || || || || Sbjct 265 CACTTTCAAACAGCGGTTAAAAGCTGTTCGCAAGGCGGTGTACGTGGCGGCGCAGCAACC 324 Query 132236 GCGTATTATCCGATGTGGCACTTAGAAGTAGAGAACCTATTAGTTCTGAAAAATAACAAA 132295 || || ||| | ||||| ||||||||||| ||||| ||||| || ||||||||| Sbjct 325 TTGTTCTACCCGCTTTGGCATTTAGAAGTAGAAAACCTGTTAGTACTTAAAAATAACCGC 384 Query 132296 GGCGTGGATGAAAACCGTATTCGACATATGGACTACGGAATTCAAATTAATGACCTTATG 132355 || || ||||| ||||| | || ||| | || ||||| | || ||||| | || ||| Sbjct 385 GGGGTTGATGACAACCGCGTGCGTCATTTAGATTACGGCGTACAGTTTAATAAACTAATG 444 Query 132356 ATGGAACGCCTTGGTAAAAATGATTATATTACTTTATTTAGCCCTCACGAAATGTCAGGC 132415 || | |||| | || || ||||| || |||||||| || || ||||| Sbjct 445 TACTCGCGTTTAATTAAAGACGACTACATTACCTTGTTTAGCCCCTCTGATGTGCCAGGC 504 Query 132416 GAACTATACTACTCGTTCTTTGAAGATCAAGATAAATTCCGTGAGCTTTATGAGAAAGCT 132475 || ||| | | || |||||||| ||||| | || | |||||||| ||| Sbjct 505 ---CTTTACGATGCATTTTTTGAAGACCAAGACGAGTTTGACGCGCTTTATGTAAAATAC 561 Query 132476 GAAAAAGACCCGACAATCAGAAAGAAAAGAATTAAAGCACTAGAACTCTTTGAATTGTTC 132535 ||| ||||| |||| | || ||| | |||||||| | ||||| || | |||| Sbjct 562 GAACAAGACGAATCAATTCGTAAAAAACGCATTAAAGCTATTGAACTGTTCTCAATGTTT 621 Query 132536 ATGACTGAACGTTCTGGTACTGCTCGAATTTATCCACAGTTTGTTGATAACACGAATAAC 132595 | |||||| | |||| | ||| ||||| ||| ||||| || |||| Sbjct 622 GCGCAAGAACGTGCAAGTACCGGTCGTATTTACTTACAAAACGTTGACCACTGTAATACG 681 Query 132596 TACACTCCATTTATTCGTGAAAAAGCTCCAATTCGTCAGAGTAACTTATGTTGTGAAATC 132655 ||| || || ||| | || || || ||||| || ||| ||||||| ||||| Sbjct 682 CACAGCCCGTTCATTGCTAAAGTGGCACCTATTCGCCAATCTAATTTATGTTTAGAAATT 741 Query 132656 GCTATTCCAACTAA 132669 || | |||||||| Sbjct 742 GCATTACCAACTAA 755 >seq509673 Length=441 Score = 131 bits (144), Expect = 2e-25 Identities = 140/185 (76%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 132149 CATACGGGTGTTATTCCATTCTGGAAACATTTCCAAACTGCAGTAAAATCTTGTTCTCAA 132208 ||||||||| ||| ||||||| |||| ||||||||||| || |||| || || ||| Sbjct 418 CATACGGGTTGTATCCCATTCTATAAACTGTTCCAAACTGCTGTTAAATGCTGCTCACAA 359 Query 132209 GGTGGTATTCGTGGTGGTGCTGCTACAGCGTATTATCCGATGTGGCACTTAGAAGTAGAG 132268 || || | ||||| ||||| || || || ||| || | ||||| |||||||| ||| Sbjct 358 GGCGGCGTCCGTGGCGGTGCAGCGACGTTGTTTTACCCATTATGGCATTTAGAAGTTGAG 299 Query 132269 AACCTATTAGTTCTGAAAAATAACAAAGGCGTGGATGAAAACCGTATTCGACATATGGAC 132328 |||| || |||||||||||| |||||||| || |||||| | || |||||||| Sbjct 298 TCATTATTGGTACTGAAAAATAACCGCGGCGTGGAAGACAACCGTGTCCGTCATATGGAT 239 Query 132329 TACGG 132333 ||||| Sbjct 238 TACGG 234 >seq506238 Length=275 Score = 131 bits (144), Expect = 2e-25 Identities = 131/170 (77%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 43722 GGTGGTCAACACCTGAACGTTAACGTTCTGCGTCGTGAAACTCTGGAAGATGCAGTTAAG 43781 ||||||||||| | ||||| || || | ||||||||||| |||||||||| ||||| Sbjct 218 GGTGGTCAACATTTAAACGTGAATGTGTTACGTCGTGAAACATTGGAAGATGCTGTTAAA 159 Query 43782 CATCCGGAAAAATATCCGCAGCTGACCATCCGTGTATCCGGTTATGCAGTTCGCTTTAAC 43841 || || ||||||||||| || | || || |||||||| ||||| ||||| || |||||| Sbjct 158 CACCCTGAAAAATATCCACAATTAACTATTCGTGTATCAGGTTACGCAGTGCGTTTTAAC 99 Query 43842 TCTCTGACTCCGGAACAGCAGCGCGACGTTATCGCTCGGACATTTACCGA 43891 || | || || ||||| |||| ||||| | | || |||||||| || Sbjct 98 TCATTAACACCAGAACAACAGCAAGACGTATTAACACGTACATTTACAGA 49 >seq511551 Length=634 Score = 93.3 bits (102), Expect = 5e-14 Identities = 94/120 (78%), Gaps = 2/120 (2%) Strand=Plus/Plus Query 59845 TTCCCTAAACTTGTTATGTTCATTGAAGAGGGTGTCAATCTTTATAAAG-ACGACCCGAA 59903 |||||||| ||| | | ||| |||| |||||||| ||||| | || | ||||| || Sbjct 227 TTCCCTAAGCTTATCCTAACTATTAAAGACGGTGTCAA-CTTTAAACAGGAAGACCCAAA 285 Query 59904 CTATGATATTAAGCAGCTTGCTCTAGAGTGTGCAAGCAAAAGAATGTATCCTGATATTAT 59963 |||| ||||||| ||| | |||||||||||||| || || | ||||| ||||||||||| Sbjct 286 CTATAATATTAAACAGTTAGCTCTAGAGTGTGCCAGTAAGCGTATGTACCCTGATATTAT 345 >seq351952 Length=416 Score = 91.5 bits (100), Expect = 2e-13 Identities = 128/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 43722 GGTGGTCAACACCTGAACGTTAACGTTCTGCGTCGTGAAACTCTGGAAGATGCAGTTAAG 43781 |||||||||||| | |||||||| || || ||||||| | |||||| | | Sbjct 200 GGTGGTCAACACTTAAACGTTAATGTAATGAACCGTGAAATGTTATTGGATGCAATGGAA 141 Query 43782 CATCCGGAAAAATATCCGCAGCTGACCATCCGTGTATCCGGTTATGCAGTTCGCTTTAAC 43841 |||| || || ||||| || | || || |||||||| ||||| ||||| || |||||| Sbjct 140 AATCCAGATAAGTATCCACAATTAACAATTCGTGTATCGGGTTACGCAGTACGATTTAAC 81 Query 43842 TCTCTGACTCCGGAACAGCAGCGCGACGTTATCGCTCGGACATTTACCGAGAGTCTATAA 43901 || | ||| | ||||| ||| || || ||| | || || ||||| | || |||||| Sbjct 80 TCGTTAACTGCAGAACAAAAGCAAGATGTAATCACACGTACCTTTACAGCGACGCTATAA 21 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 537622726110560