Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014
-11-24] 525,502 sequences; 547,831,023 total letters
Query= NC_018855.1
Length=169158
Score E
Sequences producing significant alignments: (Bits) Value
seq449735 197 1e-45
seq509673 131 2e-25
seq506238 131 2e-25
seq511551 93.3 5e-14
seq351952 91.5 2e-13
>seq449735
Length=3187
Score = 197 bits (218), Expect = 1e-45
Identities = 486/734 (66%), Gaps = 5/734 (1%)
Strand=Plus/Plus
Query 131937 AAGTTTCATTGCCTACTCCAATTATGGCAGGTGCTCGTACTCCAACTCGCCAGTTCT-CT 131995
|| ||||| | ||||| |||||||||||||||| |||||| ||||| |||||||| ||
Sbjct 26 AAATTTCACTACCTACGCCAATTATGGCAGGTGTTCGTACGCCAACACGCCAGTTTAGCT 85
Query 131996 AGTTGTGTAGTTATTGAAGCCGGTGATTCGTTAAAATCTATTAACAAAACTTCAGCATCA 132055
|| ||||| | || || || || | | || |||||| || || | ||
Sbjct 86 CGT-GTGTATTAATAGAGTGTGGCGACAGCCTTGATTCAATTAACGCCACCTCGTCTGCA 144
Query 132056 ATTATTGAATATATTTCTAAACGAGCTGGTATAGGTATCAACGTTGGTATGCTTCGTGCA 132115
||| || |||| | || |||| || || || || || |||| ||| ||||||||
Sbjct 145 ATTGTTAAATACGTATCGCAACGTGCCGGCATTGGCATTAACGCAGGTCGCATTCGTGCA 204
Query 132116 GAAGGTTCTAAGATCGGTATGGGTGAAGTTCGACATACGGGTGTTATTCCATTCTGGAAA 132175
||| | || | | || |||| ||||||||| |||||| || | ||
Sbjct 205 CTGGGTAGCCACATTCGCAATGGCGAAGCGTACCATACGGGTTGTATTCCTTTTTATAAG 264
Query 132176 CATTTCCAAACTGCAGTAAAATCTTGTTCTCAAGGTGGTATTCGTGGTGGTGCTGCTACA 132235
|| || ||||| || || ||| ||||| ||||| ||| | ||||| || || || ||
Sbjct 265 CACTTTCAAACAGCGGTTAAAAGCTGTTCGCAAGGCGGTGTACGTGGCGGCGCAGCAACC 324
Query 132236 GCGTATTATCCGATGTGGCACTTAGAAGTAGAGAACCTATTAGTTCTGAAAAATAACAAA 132295
|| || ||| | ||||| ||||||||||| ||||| ||||| || |||||||||
Sbjct 325 TTGTTCTACCCGCTTTGGCATTTAGAAGTAGAAAACCTGTTAGTACTTAAAAATAACCGC 384
Query 132296 GGCGTGGATGAAAACCGTATTCGACATATGGACTACGGAATTCAAATTAATGACCTTATG 132355
|| || ||||| ||||| | || ||| | || ||||| | || ||||| | || |||
Sbjct 385 GGGGTTGATGACAACCGCGTGCGTCATTTAGATTACGGCGTACAGTTTAATAAACTAATG 444
Query 132356 ATGGAACGCCTTGGTAAAAATGATTATATTACTTTATTTAGCCCTCACGAAATGTCAGGC 132415
|| | |||| | || || ||||| || |||||||| || || |||||
Sbjct 445 TACTCGCGTTTAATTAAAGACGACTACATTACCTTGTTTAGCCCCTCTGATGTGCCAGGC 504
Query 132416 GAACTATACTACTCGTTCTTTGAAGATCAAGATAAATTCCGTGAGCTTTATGAGAAAGCT 132475
|| ||| | | || |||||||| ||||| | || | |||||||| |||
Sbjct 505 ---CTTTACGATGCATTTTTTGAAGACCAAGACGAGTTTGACGCGCTTTATGTAAAATAC 561
Query 132476 GAAAAAGACCCGACAATCAGAAAGAAAAGAATTAAAGCACTAGAACTCTTTGAATTGTTC 132535
||| ||||| |||| | || ||| | |||||||| | ||||| || | ||||
Sbjct 562 GAACAAGACGAATCAATTCGTAAAAAACGCATTAAAGCTATTGAACTGTTCTCAATGTTT 621
Query 132536 ATGACTGAACGTTCTGGTACTGCTCGAATTTATCCACAGTTTGTTGATAACACGAATAAC 132595
| |||||| | |||| | ||| ||||| ||| ||||| || ||||
Sbjct 622 GCGCAAGAACGTGCAAGTACCGGTCGTATTTACTTACAAAACGTTGACCACTGTAATACG 681
Query 132596 TACACTCCATTTATTCGTGAAAAAGCTCCAATTCGTCAGAGTAACTTATGTTGTGAAATC 132655
||| || || ||| | || || || ||||| || ||| ||||||| |||||
Sbjct 682 CACAGCCCGTTCATTGCTAAAGTGGCACCTATTCGCCAATCTAATTTATGTTTAGAAATT 741
Query 132656 GCTATTCCAACTAA 132669
|| | ||||||||
Sbjct 742 GCATTACCAACTAA 755
>seq509673
Length=441
Score = 131 bits (144), Expect = 2e-25
Identities = 140/185 (76%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 132149 CATACGGGTGTTATTCCATTCTGGAAACATTTCCAAACTGCAGTAAAATCTTGTTCTCAA 132208
||||||||| ||| ||||||| |||| ||||||||||| || |||| || || |||
Sbjct 418 CATACGGGTTGTATCCCATTCTATAAACTGTTCCAAACTGCTGTTAAATGCTGCTCACAA 359
Query 132209 GGTGGTATTCGTGGTGGTGCTGCTACAGCGTATTATCCGATGTGGCACTTAGAAGTAGAG 132268
|| || | ||||| ||||| || || || ||| || | ||||| |||||||| |||
Sbjct 358 GGCGGCGTCCGTGGCGGTGCAGCGACGTTGTTTTACCCATTATGGCATTTAGAAGTTGAG 299
Query 132269 AACCTATTAGTTCTGAAAAATAACAAAGGCGTGGATGAAAACCGTATTCGACATATGGAC 132328
|||| || |||||||||||| |||||||| || |||||| | || ||||||||
Sbjct 298 TCATTATTGGTACTGAAAAATAACCGCGGCGTGGAAGACAACCGTGTCCGTCATATGGAT 239
Query 132329 TACGG 132333
|||||
Sbjct 238 TACGG 234
>seq506238
Length=275
Score = 131 bits (144), Expect = 2e-25
Identities = 131/170 (77%), Gaps = 0/170 (0%)
Strand=Plus/Minus
Query 43722 GGTGGTCAACACCTGAACGTTAACGTTCTGCGTCGTGAAACTCTGGAAGATGCAGTTAAG 43781
||||||||||| | ||||| || || | ||||||||||| |||||||||| |||||
Sbjct 218 GGTGGTCAACATTTAAACGTGAATGTGTTACGTCGTGAAACATTGGAAGATGCTGTTAAA 159
Query 43782 CATCCGGAAAAATATCCGCAGCTGACCATCCGTGTATCCGGTTATGCAGTTCGCTTTAAC 43841
|| || ||||||||||| || | || || |||||||| ||||| ||||| || ||||||
Sbjct 158 CACCCTGAAAAATATCCACAATTAACTATTCGTGTATCAGGTTACGCAGTGCGTTTTAAC 99
Query 43842 TCTCTGACTCCGGAACAGCAGCGCGACGTTATCGCTCGGACATTTACCGA 43891
|| | || || ||||| |||| ||||| | | || |||||||| ||
Sbjct 98 TCATTAACACCAGAACAACAGCAAGACGTATTAACACGTACATTTACAGA 49
>seq511551
Length=634
Score = 93.3 bits (102), Expect = 5e-14
Identities = 94/120 (78%), Gaps = 2/120 (2%)
Strand=Plus/Plus
Query 59845 TTCCCTAAACTTGTTATGTTCATTGAAGAGGGTGTCAATCTTTATAAAG-ACGACCCGAA 59903
|||||||| ||| | | ||| |||| |||||||| ||||| | || | ||||| ||
Sbjct 227 TTCCCTAAGCTTATCCTAACTATTAAAGACGGTGTCAA-CTTTAAACAGGAAGACCCAAA 285
Query 59904 CTATGATATTAAGCAGCTTGCTCTAGAGTGTGCAAGCAAAAGAATGTATCCTGATATTAT 59963
|||| ||||||| ||| | |||||||||||||| || || | ||||| |||||||||||
Sbjct 286 CTATAATATTAAACAGTTAGCTCTAGAGTGTGCCAGTAAGCGTATGTACCCTGATATTAT 345
>seq351952
Length=416
Score = 91.5 bits (100), Expect = 2e-13
Identities = 128/180 (71%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 43722 GGTGGTCAACACCTGAACGTTAACGTTCTGCGTCGTGAAACTCTGGAAGATGCAGTTAAG 43781
|||||||||||| | |||||||| || || ||||||| | |||||| | |
Sbjct 200 GGTGGTCAACACTTAAACGTTAATGTAATGAACCGTGAAATGTTATTGGATGCAATGGAA 141
Query 43782 CATCCGGAAAAATATCCGCAGCTGACCATCCGTGTATCCGGTTATGCAGTTCGCTTTAAC 43841
|||| || || ||||| || | || || |||||||| ||||| ||||| || ||||||
Sbjct 140 AATCCAGATAAGTATCCACAATTAACAATTCGTGTATCGGGTTACGCAGTACGATTTAAC 81
Query 43842 TCTCTGACTCCGGAACAGCAGCGCGACGTTATCGCTCGGACATTTACCGAGAGTCTATAA 43901
|| | ||| | ||||| ||| || || ||| | || || ||||| | || ||||||
Sbjct 80 TCGTTAACTGCAGAACAAAAGCAAGATGTAATCACACGTACCTTTACAGCGACGCTATAA 21
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 537622726110560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |