Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_019399.1 Length=167396 Score E Sequences producing significant alignments: (Bits) Value seq449735 185 9e-42 seq506238 138 1e-27 seq509673 114 1e-20 seq511551 105 7e-18 seq351952 96.9 4e-15 seq326422 86.0 7e-12 >seq449735 Length=3187 Score = 185 bits (204), Expect = 9e-42 Identities = 492/741 (66%), Gaps = 23/741 (3%) Strand=Plus/Minus Query 138208 TTTGTTGGAATAGCAATTTCACAGCACAAGTTACTCTGACGAATAGGCGCCTTTTCACGA 138267 || ||||| | |||||||| | || || ||| || |||||||| ||| || | | Sbjct 755 TTAGTTGGTAATGCAATTTCTAAACATAAATTAGATTGGCGAATAGGTGCCACTTTAGCA 696 Query 138268 ATAAACGGAGTATAGTTATTCGTATTATCAATGAACTGCACATAAATCCTTGCGGTTCCT 138327 || ||||| | | |||| | |||| | || | ||||| | |||| | | Sbjct 695 ATGAACGGGCTGTGCGTATTACAGTGGTCAACGTTTTGTAAGTAAATACGACCGGTACTT 636 Query 138328 GAACGTTCAGTCATGAGCAA---TTCA-AATAGTTCACGGGCTTTAATACGCTTTTTACG 138383 | |||||| || |||| || | || |||||| |||||||| || |||||||| Sbjct 635 GCACGTTCT----TGCGCAAACATTGAGAACAGTTCAATAGCTTTAATGCGTTTTTTACG 580 Query 138384 AAT--ATTAGGGTCTTTTTCTGCTGCTTCGTATAATTCACGG-AAACG-GTTTTGGTCTT 138439 ||| ||| | |||| ||| | | | |||| | || |||| || |||||||| Sbjct 579 AATTGATTCG--TCTTGTTCGTATTTTAC--ATAAAGCGCGTCAAACTCGTCTTGGTCTT 524 Query 138440 TAAAATAAGAATAATAAAGTTCGCCACCCATTTCATGCGGACTGAACAAAGTAATGTAAT 138499 |||| | | || ||||| ||| || ||| || || ||||| |||||||| | Sbjct 523 CAAAAAATGCATCGTAAAG---GCCTGGCACATCAGAGGGGCTAAACAAGGTAATGTAGT 467 Query 138500 CATTCTTTCCGAATCGTTCCATCATTAGGTCATTCAGTTGAACGCCATAATCCATATGAC 138559 | | || || || |||||| | ||| | || ||||| ||||| | ||||| Sbjct 466 CGTCTTTAATTAAACGCGAGTACATTAGTTTATTAAACTGTACGCCGTAATCTAAATGAC 407 Query 138560 GGATACGGTTTTCTTCTACGCCTTTGTTATTTTTCAAAACGAGAAGATTTTCAACTTCCA 138619 | | ||||| || || || || ||||||||| | || | || ||||| ||||| | Sbjct 406 GCACGCGGTTGTCATCAACCCCGCGGTTATTTTTAAGTACTAACAGGTTTTCTACTTCTA 347 Query 138620 AATGCCAAATAGGATA--ATAAGCAGTAGCAGCGCCGCCACGAATTCCACCCTGTGAGCA 138677 ||||||||| || || | ||| || || ||||||||||| | || || || || || Sbjct 346 AATGCCAAAGCGGGTAGAACAAG--GTTGCTGCGCCGCCACGTACACCGCCTTGCGAACA 289 Query 138678 TGATTTAACTGCAGTCTGAAAATGTTTCCAAAAAGGAATAACACCAGTATGGCGTACTTC 138737 |||||| || || ||||| || || ||||||||||| ||| |||||| |||| Sbjct 288 GCTTTTAACCGCTGTTTGAAAGTGCTTATAAAAAGGAATACAACCCGTATGGTACGCTTC 229 Query 138738 ACCCATGCCAATCTTAGAACCTTCAGCACGAATCATACCAACGTTAATACCAATTCCAGC 138797 || ||| ||| | ||| |||||||| ||| ||||||| ||||| || || Sbjct 228 GCCATTGCGAATGTGGCTACCCAGTGCACGAATGCGACCTGCGTTAATGCCAATGCCGGC 169 Query 138798 GCGTTTAGAGATATATTCAACAATTGAAGCGGAAGCCTTGTTGATAGACTTTAATGAATC 138857 |||| || | |||| |||||||| || || | ||| || || | | || Sbjct 168 ACGTTGCGATACGTATTTAACAATTGCAGACGAGGTGGCGTTAATTGAATCAAGGCTGTC 109 Query 138858 ACCTGCCTCAATAACAACACATGAACTAAACTGTCGAGTCGGAGTACGACAACCAGCCAT 138917 || ||| || | ||||| || |||||||| || || || |||||| ||| ||||| Sbjct 108 GCCACACTCTATTAATACACACGAGCTAAACTGGCGTGTTGGCGTACGAACACCTGCCAT 49 Query 138918 AATAGGAGTTGGTAATGAAAT 138938 ||| || || |||| |||||| Sbjct 48 AATTGGCGTAGGTAGTGAAAT 28 >seq506238 Length=275 Score = 138 bits (152), Expect = 1e-27 Identities = 141/184 (77%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 61397 ATTACAAACTCTCGGTGAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAG 61456 ||||||| | || || || ||||| | | ||||| |||| ||||| || || | | Sbjct 38 ATTACAATGTTTCTGTAAATGTACGTGTTAATACGTCTTGCTGTTGTTCTGGTGTTAATG 97 Query 61457 AGTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGAT 61516 ||||||| || ||||| ||||| |||||||| || || | || ||||||||||| || | Sbjct 98 AGTTAAAACGCACTGCGTAACCTGATACACGAATAGTTAATTGTGGATATTTTTCAGGGT 157 Query 61517 GCTTAACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCAC 61576 | ||||| |||||||||| ||||||||||| | || || ||||| | |||||||||| Sbjct 158 GTTTAACAGCATCTTCCAATGTTTCACGACGTAACACATTCACGTTTAAATGTTGACCAC 217 Query 61577 CTTC 61580 |||| Sbjct 218 CTTC 221 >seq509673 Length=441 Score = 114 bits (126), Expect = 1e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 138538 TGAACGCCATAATCCATATGACGGATACGGTTTTCTTCTACGCCTTTGTTATTTTTCAAA 138597 || ||||| |||||||||||||||| |||||| ||||| ||||| ||||||||||| Sbjct 228 TGTACGCCGTAATCCATATGACGGACACGGTTGTCTTCCACGCCGCGGTTATTTTTCAGT 287 Query 138598 ACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCGCCGCCA 138657 || | | |||||||| |||||||| | || ||| | || || || |||||| Sbjct 288 ACCAATAATGACTCAACTTCTAAATGCCATAATGGGTAAAACAACGTCGCTGCACCGCCA 347 Query 138658 CGAATTCCACCCTGTGAGCATGATTTAACTGCAGTCTGAAAATGTTTCCAAAAAGGAATA 138717 || | || || |||||||| ||||||| ||||| || || |||| | || || ||| Sbjct 348 CGGACGCCGCCTTGTGAGCAGCATTTAACAGCAGTTTGGAACAGTTTATAGAATGGGATA 407 Query 138718 ACACCAGTATG 138728 ||| ||||| Sbjct 408 CAACCCGTATG 418 >seq511551 Length=634 Score = 105 bits (116), Expect = 7e-18 Identities = 204/294 (69%), Gaps = 18/294 (6%) Strand=Plus/Minus Query 44221 AGAATCTAATGCAATACGAGGAAGATTCAGTGTTACAACACCAAGATTATTACGTCCATC 44280 ||| | || ||||| |||||| || || | |||| ||||| | || ||||||||||| Sbjct 508 AGATTGTAGTGCAACACGAGGTAGGTTTAAGCTTACCACACCTAAGTTGTTACGTCCATC 449 Query 44281 AAGAATTTCATTACCAGTCGAATCTTTCCATACGCTCAA--GAAACTACGGCAACCCAT- 44337 || | ||| ||||||| || ||||| |||| ||| | ||| || | ||| ||||| Sbjct 448 AAACACTTCCTTACCAGAAGAGTCTTT--ATACTCTCCAAGGAAGCTCCTGCAGCCCATG 391 Query 44338 --TGGAGAAACAGGAACAGATGAACCAGTGATAGCTTTATTGTTCTTAGCTGAAATAATA 44395 || || | | ||| |||| | | ||| || ||| ||| ||||| Sbjct 390 CTTGCCTTAAAACCACCAGT--AACCTCTACAATCTTA-----TCGTAGTTGA--TAATA 340 Query 44396 TCAGGATACATCCTTTTGCTTGCACACTCTAGAGCAAGCTGCTTAATATCATAGTTCGGA 44455 ||||| ||||| | || || |||||||||||||| | ||| ||||||| |||||| || Sbjct 339 TCAGGGTACATACGCTTACTGGCACACTCTAGAGCTAACTGTTTAATATTATAGTTTGGG 280 Query 44456 TCGTCTT-TGTAAAGATTAACACCTTCTTCAACGAACATAACAAGCTTAGGGAA 44508 || || | | ||||| || ||||| |||| || | | |||||||||||| Sbjct 279 TCTTCCTGTTTAAAG-TTGACACCGTCTTTAATAGTTAGGATAAGCTTAGGGAA 227 >seq351952 Length=416 Score = 96.9 bits (106), Expect = 4e-15 Identities = 124/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 61411 GTGAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAACT 61470 || |||||||| | ||| || || ||| ||||| | ||| | |||||||| || ||| Sbjct 34 GTAAAGGTACGTGTGATTACATCTTGCTTTTGTTCTGCAGTTAACGAGTTAAATCGTACT 93 Query 61471 GCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCATCT 61530 || ||||| |||||||| || || | || ||||| || || |||| | | |||||| Sbjct 94 GCGTAACCCGATACACGAATTGTTAATTGTGGATACTTATCTGGATTTTCCATTGCATCC 153 Query 61531 TCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTCA 61581 | ||||||| || || |||||||| | |||||||||||||||| Sbjct 154 AATAACATTTCACGGTTCATTACATTAACGTTTAAGTGTTGACCACCTTCA 204 >seq326422 Length=2068 Score = 86.0 bits (94), Expect = 7e-12 Identities = 90/115 (78%), Gaps = 4/115 (3%) Strand=Plus/Plus Query 68786 GCGCTCTACCAAACTGAGCTACAC--GGAGTAAATTGAATTGGAGCGGATAATGAGAATC 68843 |||||||||||| |||||||| | | | | | || |||||||| | | ||||| Sbjct 291 GCGCTCTACCAA-CTGAGCTATATCAGCATCACCATAAACTGGAGCGGGCAGCGGGAATC 349 Query 68844 GAACTCACATCATCAGATTGGAAGTCTGAGGTAAT-GCCATTATACGATATCCGC 68897 |||| | ||||||||| ||||||| |||||||||| ||||||||||||| |||| Sbjct 350 GAACCCGCATCATCAGCTTGGAAGGCTGAGGTAATAGCCATTATACGATGCCCGC 404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 532021363491520