Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq509954 134 2e-26 >seq509954 Length=433 Score = 134 bits (148), Expect = 2e-26 Identities = 241/349 (69%), Gaps = 6/349 (2%) Strand=Plus/Plus Query 113075 TTGCTCAAGACTTGAAAGCAATTCACGGTCTTGATGCCGAGCAAGAACTTAGCAACATTC 113134 ||||||| || ||||||| | || || | || || || |||||||| || |||| Sbjct 1 TTGCTCAGGATATGAAAGCTGTACATGGCTTGGACGCAGAAGAAGAACTTGCAAATATTC 60 Query 113135 TCTCTACTGAGATTCTTGCTGAGATCAACAGAGAAGTTGTTCGTACTATCTACACTAACG 113194 | || ||||| |||||||| || || ||| | || | ||||||| | || | | | Sbjct 61 TTTCAACTGAAATTCTTGCAGAAATTAACCGTGAGCTAATTCGTACCGTATATGCAACTG 120 Query 113195 CTGTAGCAGGTGCACAGAACAATACTTCTTCT---GCAGGTATCTTCGACCTTGACGTTG 113251 | | | |||||||| ||| | ||| | || ||||||||||| | ||||| | Sbjct 121 CAAAACCTGGTGCACA-AAC--TGGTTCAGCAAACGCTGGTATCTTCGATTTAGACGTAG 177 Query 113252 ACTCTAATGGTCGTTGGTCAGTTGAGAAGTTCAAAGGACTTCTTTTCCAGATCGAAAGAG 113311 | | |||||||| |||||||| || || |||||||||||| | ||||| || ||| | | Sbjct 178 ATGCAAATGGTCGCTGGTCAGTAGAAAAATTCAAAGGACTTATGTTCCAAATTGAACGTG 237 Query 113312 ATGCTAACGCTATCGGTCAGCAAACTCGTCGCGGGAAGGGCAACATCTTGATCTGCTCTG 113371 |||||||| |||| | | |||| | || || || || ||| | | ||||| || Sbjct 238 ATGCTAACCAAATCGCTAAAGAAACCAGACGTGGTAAAGGTAACTTTATTATCTGTTCAT 297 Query 113372 CAGACGTTGCTTCTGCTCTAGGTATGGCAGGCGTTCTTGATTACGCTCC 113420 | ||||| |||||||| | | | || || | ||||||| ||| || Sbjct 298 CTGACGTAGCTTCTGCATTGGCTGCTGCTGGAATCCTTGATTTCGCACC 346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 549451710392880