Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudopleuronectes_20yokohamae_20[genbank_20GCA_5F000787555.1_202014 -11-24] 525,502 sequences; 547,831,023 total letters Query= NC_019485.1 Length=59080 Score E Sequences producing significant alignments: (Bits) Value seq523657 132 2e-26 seq184512 116 1e-21 seq505416 104 9e-18 seq505100 102 3e-17 seq400345 102 3e-17 seq514610 100 1e-16 seq491336 96.9 1e-15 seq512587 89.7 2e-13 seq505588 82.4 3e-11 >seq523657 Length=447 Score = 132 bits (146), Expect = 2e-26 Identities = 260/377 (69%), Gaps = 7/377 (2%) Strand=Plus/Minus Query 43463 GTATCAATCATACGTGAACCATAGATGTACTGTGTCTGCTGCGGAGTACGGTTATCTT-T 43521 || |||||||||||||||||| | || || ||||| | ||||||||||||| | | Sbjct 374 GTGTCAATCATACGTGAACCAGAAATAACCTTAGTCTGTTTAGGAGTACGGTTATTATCT 315 Query 43522 CAGT-ACCAGATACAGCTTCATCAGATCATCAAAAGAAACCAGAGATGGAGTAGCACCTT 43580 | | | ||||| | ||| | ||| || | | ||| | |||||||||||||| Sbjct 314 AACTCAATAGATAAACG--CATTAAGTCACCATAGGTAACTACGCTTGGAGTAGCACCTT 257 Query 43581 CACCAGTTACTTCAGAGTCTTTAGTAGCAGCACCTGCATACATGACAACACCAGCACCAT 43640 ||||||||||||| | ||||| ||||||||||| ||| | |||||||| || | Sbjct 256 CACCAGTTACTTCTGCATCTTTGGTAGCAGCACCAGCAAAGTAAACAACACCGGCTGAGT 197 Query 43641 TCAGTAGATCAATTTGAAGCTGTGCTTCATACATCTGAGCAGCACCCTGAATTGCTTCAC 43700 | |||| ||||| || | ||||| ||| || ||||| | | ||||| Sbjct 196 TAAGTAAGTCAATCTGCAATGCCGCTTCTGTCATTTGGTTTGCACCACGTAACATTTCAC 137 Query 43701 GACGCATATGC-TGATGAAGTTCTGCATCAGAGTCAAAATCCATGGATTCACGGGAGAAT 43759 | || ||| | || || || | ||| | ||||| |||| || || | | | || Sbjct 136 GGTTAATGTGCATCATTAA-CTCAGAATCTGTATCAAAGTCCAAAGACTCTTGAGTGTAT 78 Query 43760 TCATAGAAGAAACCCATCTTATGCATGGAGCCTTCAATAACTTTACGGGTGAAACCAACA 43819 |||| ||||||||| | ||| | ||| || ||||||| || ||| ||||||| || Sbjct 77 TCATCGAAGAAACCGAACTTCTCCATTGAACCTTCAAGTTCTAAACGCTTGAAACCGACT 18 Query 43820 CGGTTAACACG-ACCAC 43835 ||||||||||| ||||| Sbjct 17 CGGTTAACACGAACCAC 1 >seq184512 Length=2755 Score = 116 bits (128), Expect = 1e-21 Identities = 175/245 (71%), Gaps = 13/245 (5%) Strand=Plus/Plus Query 42989 TTAATAACTGCCAGACGCTCTGTACGCTCAGGCAGGAAACCATACCACCATTTAATAGAG 43048 ||||||||||| | |||||||||||| | || || || ||||||||||| |||||| Sbjct 107 TTAATAACTGCAATACGCTCTGTACGTAGACCCATAAAGCCGTACCACCATTTGATAGAG 166 Query 43049 CAGAAGCCCATTTCACCGTATGGGTCAGTACGGTCAGCAGTTTCCATACCCGGCAGTTTA 43108 | |||||||| || || || || || |||||||||||||||| |||| ||| ||| Sbjct 167 CTAAAGCCCATCTCGCCATAAGGATCGTTACGGTCAGCAGTTTCAGTACCTGGC---TTA 223 Query 43109 ---GAAATAATGCTAAAC---TTAGATTTCTCGCCAGAGTAGAAGAAACCAATAGTACTG 43162 | || | | |||| ||||| || || ||| | ||||||||||||| | Sbjct 224 CGTGTAACAGTTTCAAACTTATTAGACTTACCGTCAGTTT---GGAAACCAATAGTAGTA 280 Query 43163 AAGGATTCGGCACCTACAACCAGCAGAGGATAAATATCATACTTGCTGTTAGTAGAATGC 43222 || ||||| ||||||||| || || || | | ||| ||||| || || ||||| Sbjct 281 AATGATTCATCACCTACAATAAGAAGTGGGAATACATCGTACTTACTACCTGTTGAATG- 339 Query 43223 ATAGG 43227 ||||| Sbjct 340 ATAGG 344 Score = 105 bits (116), Expect = 3e-18 Identities = 218/320 (68%), Gaps = 7/320 (2%) Strand=Plus/Plus Query 43718 AGTTCTGCATCAGAGTCAAAATCCATGGATTCACGGGAGAATTCATAGAAGAAACCCATC 43777 || || |||||||||||||| | ||| || || ||||| || | ||| | | Sbjct 815 AGATCAGCATCAGAGTCAAAGTTCATTAGATCTTTAGACCATTCAGTAAACATACCAAAC 874 Query 43778 TTATGCATGGAGCCTTCAATAACTTTACGGGTGAAACCAACACGGTTAACACGACCACCG 43837 || | | | |||||||| ||||||| |||||||||||||||||||||||||||| Sbjct 875 TTCTCAAACGTACCTTCAATCTCTTTACGTTTGAAACCAACACGGTTAACACGACCACCA 934 Query 43838 GTTTCAGACAGGGTAGGCAGTTTGCTTGAGATAGTACCTACGTCACGACTTGAACCATAG 43897 |||||| || ||| ||||| | || || ||| | ||| | ||| || Sbjct 935 GTTTCACCAAGTAAAGGAAGTTTACCTGGAATCAAACCAATGTCTTTAGAGCTACCGTAT 994 Query 43898 ATATTACCATTAGCGTACTGTGCGCCTTTAGCATCAATACCCTGATCGTTGACGTTCAGA 43957 | ||||||||| | | |||||| |||||||||||||||||||| | ||| | Sbjct 995 AAGTTACCATTAACTAGTTCAGCGCCTGCTGCATCAATACCCTGATCGTTAATGTT---A 1051 Query 43958 TCGCTCA-GTA--AAGGCATATAGTGATAAGCCTTAATAGTCTTACCAAAATGCTTAGGC 44014 || ||| || |||| | ||| || || |||||| |||| | | ||||||| Sbjct 1052 GCG-TCATCTAGCAAGGTAGATAATGGTACTGCTTAATTACTGTACCTGAGTTCTTAGGC 1110 Query 44015 ATGTTACGGACGTTAGCTAA 44034 ||| |||| || | |||||| Sbjct 1111 ATGGTACGTACATCAGCTAA 1130 >seq505416 Length=484 Score = 104 bits (114), Expect = 9e-18 Identities = 214/318 (67%), Gaps = 3/318 (1%) Strand=Plus/Plus Query 17855 TTTATTCCTGCATTCAAGGCTGCACCTAAAGCAGAAGATGGTTGGCATTATTTGTTTGGT 17914 ||||||||| | || || ||||||||||| ||||| | |||||| | |||||| Sbjct 158 TTTATTCCTACTTTTAAAAAAGCACCTAAAGCTCCTGATGGGTATCATTATCTATTTGGT 217 Query 17915 TTCTTCAATTTAGGGGGAACAGTATCAGGAAGACTTTCATCAAGTAATCCAAACTTACAG 17974 |||||| | || || || |||||||||||||| | |||||| || ||||| Sbjct 218 AACTTCAACCTTGGAGGTACTGTATCAGGAAGACTAAGTAGTAATAATCCTAATTTACAA 277 Query 17975 CAAATACCTTCAAGTAAATCTCCGTACTCAAAAGTAATCAAAAAATGTTTTAGAGCACCT 18034 ||||| ||| ||| | | ||| | ||| | || || || |||||| ||| ||| Sbjct 278 CAAATTCCT---AGTGGTAGTACATACGCTAAACTTATTAAGAAGTGTTTTGTAGCCCCT 334 Query 18035 AAAGGTTTTCTATTTGTTGGGTTAGATTTTGCTTCATTAGAAGACAGAATATCTGCGGTT 18094 ||||| | | ||||| || |||| || || | ||||| || || ||| || Sbjct 335 AAAGGATGGTTGTTTGTGGGTGCGGATTACGCATCTCTTGAAGATAGGATTGATGCTCTT 394 Query 18095 ACTACCAAAGATTCCAACAAATTGAAAGTGTATACCGATGGGTATGACGGGCACTGTTTA 18154 || || ||| || || || ||||| || || || || ||||| || |||| ||| Sbjct 395 TTAACTAAGGATAGAAATAAGTTAAAAGTATACACAGACGGTTATGATGGACACTCATTA 454 Query 18155 CGTGCTTATGCGTACTTT 18172 || || | || |||||| Sbjct 455 CGAGCCTTTGGTTACTTT 472 >seq505100 Length=723 Score = 102 bits (112), Expect = 3e-17 Identities = 267/395 (68%), Gaps = 13/395 (3%) Strand=Plus/Plus Query 53805 AACCGGTCTTCCCATGCGCCTTTAAATTCTTTTTCCTCACAAGGGAATTTCTCACAAAGT 53864 || ||||| ||||||||||||||||| ||| |||||||||||| || |||||||| | | Sbjct 216 AAGCGGTCATCCCATGCGCCTTTAAACTCTGATTCCTCACAAGGAAACTTCTCACATACT 275 Query 53865 GGGTATACGTTAACTACCCATGCTCCGGATTCAACCGCTTCATATAAAATATC--TCGCT 53922 || || || || |||| || || || |||| |||| ||||||| ||| | || Sbjct 276 GGATAAACACCTACATCCCAAGCACCAGACTCAATAGCTTGATATAAAGGATCGTTAGC- 334 Query 53923 TATTAAATGGAGTACCGTTGAATATAACCTTACGCTTAAGCGGACTTAATGC--AGGTAG 53980 |||||| |||||||| |||| |||| |||| || ||| || | || Sbjct 335 -ATTAAAGGGAGTACCAAGCCATATTCTCTTAGACTTAGTTGGGTGTAACGCATACTTAA 393 Query 53981 TACGCCTTTATACACAGTGTCATTGATGGTAGCCATAGATGCCTTAGAGTTAGCATCCTC 54040 || ||| | | || || || || || | |||| | || | | ||| || Sbjct 394 TA-GCC-TGACCAACTGTATCCTTAATAGATTGAATAGCAGTAGGTGATCTTGAATCTTC 451 Query 54041 ATCACTTACCAGATCATCCAGTACTGCTAAT-ACAGGTCGTTTACCAAATATTTTGGAAC 54099 | ||| |||| ||||||| || | | ||| || || ||||| || ||| ||| Sbjct 452 GTTACTAACCAAGTCATCCATTA-TACCAATCTGCGGACGCATACCATATTCTTTAAAAC 510 Query 54100 CACGAATACCAGTCTTAGCACCAAA-CATCTTCAAGCCAAACTTATTACCTTCCTGATTC 54158 |||||| ||||| |||||||||||| | |||| | | ||| ||| |||| | |||| Sbjct 511 CACGAACACCAGACTTAGCACCAAACCCTCTT-ACACAAAATTTACTACCATTGGTATTC 569 Query 54159 ACAAACTCAATATAGTTATCTGTAAAT-TTATATT 54192 | |||||| | ||||| |||||| | ||||| Sbjct 570 ATAAACTCCCAACGCTTATCAGTAAATCTCATATT 604 >seq400345 Length=893 Score = 102 bits (112), Expect = 3e-17 Identities = 194/284 (68%), Gaps = 4/284 (1%) Strand=Plus/Minus Query 43625 ACAACACCAGCACCATTCAGTAGATCAATTTG--AAGCTGTGCTTCATACATCTGAGCAG 43682 |||||||||||| | || || | ||||||||| |||| |||| || | | || Sbjct 352 ACAACACCAGCAGCGTTAAGCAAATCAATTTGCAAAGCAT--CTTCGGTGATTTCATTAG 295 Query 43683 CACCCTGAATTGCTTCACGACGCATATGCTGATGAAGTTCTGCATCAGAGTCAAAATCCA 43742 ||||| || |||||| || ||| || | || ||||||| |||||| || | Sbjct 294 CACCCATGATCATTTCACGGTTGATGTGCATTTGTAAATCAGCATCAGTGTCAAAGTCTA 235 Query 43743 TGGATTCACGGGAGAATTCATAGAAGAAACCCATCTTATGCATGGAGCCTTCAATAACTT 43802 || || || | |||||| ||||||||| | || | | |||||||| | | Sbjct 234 ACGACTCTTGGTTGTATTCATCGAAGAAACCAAATTTCTCTAATGAGCCTTCCAGTTCAA 175 Query 43803 TACGGGTGAAACCAACACGGTTAACACGACCACCGGTTTCAGACAGGGTAGGCAGTTTGC 43862 |||| ||||||||| |||||||||||||||||| ||||| || ||| || || Sbjct 174 TACGACGGAAACCAACGCGGTTAACACGACCACCGTTTTCACTTAGTACAGGTAGCTTAG 115 Query 43863 TTGAGATAGTACCTACGTCACGACTTGAACCATAGATATTACCA 43906 || || ||||| ||||| ||||||||||| | |||||| Sbjct 114 ACGAAATCGTACCAACGTCTTTGCTTGAACCATATAAGTTACCA 71 >seq514610 Length=413 Score = 100 bits (110), Expect = 1e-16 Identities = 162/231 (70%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 17930 GGAACAGTATCAGGAAGACTTTCATCAAGTAATCCAAACTTACAGCAAATACCTTCAAGT 17989 |||||||||||||| ||||| || ||| || |||||||| | || || ||| Sbjct 3 GGAACAGTATCAGGTAGACTAAGTTCTAGTGGGCCTAACTTACAAAATATTCCCTCA--- 59 Query 17990 AAATCTCCGTACTCAAAAGTAATCAAAAAATGTTTTAGAGCACCTAAAGGTTTTCTATTT 18049 || ||| || |||| |||||| ||||||||||| || | || | | || Sbjct 60 AATTCTGTCTATGCAAAGCACATCAAACGCTGTTTTAGAGCGCCAGATGGATGGTTCTTA 119 Query 18050 GTT-GGGTTAGATTTTGCTTCATTAGAAGACAGAATATCTGCGGTTACTACCAAAGATTC 18108 ||| ||| | || || || || ||||| || ||||| ||||| | || ||||| || | Sbjct 120 GTTGGGGCTGGACTTCGCCTCGTTAGAGGATAGAATCTCTGCACTAACAACCAAGGACCC 179 Query 18109 CAACAAATTGAAAGTGTATACCGATGGGTATGACGGGCACTGTTTACGTGC 18159 ||| ||||| ||||| || || ||||| ||||| || || || ||||| || Sbjct 180 CAATAAATTAAAAGTTTACACAGATGGCTATGATGGCCATTGCTTACGAGC 230 >seq491336 Length=644 Score = 96.9 bits (106), Expect = 1e-15 Identities = 351/537 (65%), Gaps = 18/537 (3%) Strand=Plus/Plus Query 18212 ATTAATAGCATCGAAGGTAAATATAAAGATATACGTCAAAAAAGTAAAACTCCAACATTC 18271 |||||||| |||| | | | | ||||| | |||||| | |||||| | || |||||| Sbjct 56 ATTAATAGTATCGCGGTTCGTTTTGAAGATGTTCGTCAAGACAGTAAACCACCTACATTC 115 Query 18272 TTACTTACCTACCGTGGTACATACATGGGTTTAATGCAGAAATGTGGTTTTGATGAACCA 18331 || | ||||| | ||||| | ||| || ||||| | || ||||| | ||| | | Sbjct 116 TTGTTGACCTATGGCGGTACGTTCATAGGACTAATGAATAA-TGTGGGTATGAGCAGAGA 174 Query 18332 AC-TGCAAAACAAATTGAATCCCGATATCACGAACTT-TATAAGGAATCTGATGATTGGG 18389 | ||| ||| ||| ||| || || || | ||| ||| | |||||||| |||| Sbjct 175 AGATGCTAAAGAAACCGAAGCCAACTACCAT-AGCTTATATGTAGTTTCTGATGAGTGGG 233 Query 18390 TTAATGCCCGATTAGAAGAAGCTACTAAAGTTGGATACGTCACTGCTGCCTTTGGATTGC 18449 |||| | ||| | |||| | | || ||| | |||||||| ||||| || || | Sbjct 234 TTAAATCTAAGATAGTACAAGCCAGCATAGATGGTTTCGTCACTGTCGCCTTCGGCTTAC 293 Query 18450 GCGTCAGAACGCCTCTGCTGCATCAGGTAGTAATG--GGA-ACCAAACATACACCTTATG 18506 | || |||| ||| ||||| | || | | ||| ||| | | | || ||| |||| Sbjct 294 GTGTACGAACCCCTATGCTGTCTAAGACAATCATGACGGATAGCGGGCGTATACCATATG 353 Query 18507 AGGCAGAAGCTGAAGGGCGTACTGCTGGTAACGCATTAGGGCAA--TCATGGTGCTTACT 18564 | ||| | |||| | ||||| ||||||||| |||| ||| | |||| | || Sbjct 354 AAGCACAGAAAGAAGCTAGAACTGCGGGTAACGCACTAGGCCAAAGTTATGGAA--TGCT 411 Query 18565 TAATAACAGAGCAGCAGTTGATGTGGCTCAACGTCTGGAAAAATTAC--CTGAATTGCGT 18622 ||||||||||| || || || | ||| | | || | || | |||| | || Sbjct 412 CAATAACAGAGCTGCTGTGGAATT---TCA--GGCAATAACACTTGCTTCTGATTACAGT 466 Query 18623 ATGCAGATCAGACCGGGTGCTCATATCCATGATGCTCAGTATTATATTATTCCGGATAAC 18682 | | || ||| |||| | |||||| ||||||||||| | |||| | | | Sbjct 467 ACTGAAATATTACCTTGTGCCCCTATCCACGATGCTCAGTACTTCGTTATACGTAACGAT 526 Query 18683 ATTGATGTACTTCATTGGTTAAACGAAAACTTAGTTGATGCTGTTAAATGGCAGGAA 18739 ||||| ||| || | ||||| || || ||| || || | | | | ||||||||| Sbjct 527 ATTGAAGTAGTTAAGTGGTTCAATGACAACCTAATTCCTTGTATGCAGTGGCAGGAA 583 >seq512587 Length=355 Score = 89.7 bits (98), Expect = 2e-13 Identities = 126/177 (71%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 18020 TGTTTTAGAGCACCTAAAGGTTTTCTATTTGTTGGGTTAGATTTTGCTTCATTAGAAGAC 18079 ||||||| ||||||||||||| ||| | ||| ||| ||| | || |||||||| Sbjct 160 TGTTTTAAGGCACCTAAAGGTTGGATATGGGCTGGCGCAGACTTTTCATCTTTAGAAGAT 219 Query 18080 AGAATATCTGCGGTTACTACCAAAGATTCCAACAAATTGAAAGTGTATACCGATGGGTAT 18139 ||||| || || | || || ||| | || || | || ||||| |||||||| ||| Sbjct 220 AGAATTTCAGCTCTAACAACTCGTGATCCAAATAAGCTAAAGGTGTACACCGATGGTTAT 279 Query 18140 GACGGGCACTGTTTACGTGCTTATGCGTACTTTAAAGATGAAATGCCAGACATTATT 18196 || || |||||| |||| || ||| | ||||| || |||||||| |||||| Sbjct 280 GATGGTCACTGTCTACGAGCCTATTCTTACTTCGGGCATATGATGCCAGATATTATT 336 >seq505588 Length=551 Score = 82.4 bits (90), Expect = 3e-11 Identities = 75/92 (82%), Gaps = 2/92 (2%) Strand=Plus/Minus Query 22421 GCTGTTAAGCAAATGCGACATAAAGTGCTTATGGCTGAGTGC-GGTGCAATTAACTTTGA 22479 ||||| ||||| ||||| |||||| | ||||||||||| ||| ||||| ||||| | || Sbjct 91 GCTGTAAAGCAGATGCGTCATAAACTACTTATGGCTGA-TGCTGGTGCGGTTAACATGGA 33 Query 22480 AATGGATGAAATGGGTTCTAACTTAATGGGTA 22511 ||| ||||| || ||||||||| || | |||| Sbjct 32 AATCGATGAGATAGGTTCTAACCTACTTGGTA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 187755385814808